Wall clock time and date at job start Tue Mar 31 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48499 * 109.47240 * 240.00199 * 3 2 1 5 5 H 1.48502 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46776 * 120.00293 * 3 2 1 7 7 C 1.37879 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00030 * 181.81808 * 7 2 1 9 9 C 1.50700 * 119.99696 * 1.81769 * 7 2 1 10 10 C 1.52998 * 115.54932 * 84.54997 * 9 7 2 11 11 N 1.46907 * 109.47296 * 67.39551 * 10 9 7 12 12 C 1.46904 * 111.00024 * 186.29377 * 11 10 9 13 13 H 1.08999 * 109.46583 * 355.30639 * 12 11 10 14 14 C 1.52997 * 109.46824 * 235.30907 * 12 11 10 15 15 C 1.53782 * 113.61251 * 163.37509 * 14 12 11 16 16 C 1.53788 * 87.07964 * 220.01717 * 15 14 12 17 17 C 1.53776 * 87.08093 * 25.43434 * 16 15 14 18 18 C 1.52997 * 109.46840 * 115.30758 * 12 11 10 19 19 H 1.09005 * 110.41697 * 182.68630 * 18 12 11 20 20 C 1.54472 * 110.37427 * 305.00017 * 18 12 11 21 21 C 1.54509 * 104.06262 * 142.81255 * 20 18 12 22 22 C 1.54471 * 104.18661 * 359.92982 * 21 20 18 23 23 O 1.44424 * 110.37145 * 60.38316 * 18 12 11 24 24 C 1.52998 * 117.49517 * 230.21318 * 9 7 2 25 25 C 1.52999 * 117.49970 * 298.87650 * 9 7 2 26 26 H 0.96997 * 119.99640 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47141 * 307.39573 * 10 9 7 28 28 H 1.08998 * 109.47294 * 187.39097 * 10 9 7 29 29 H 1.00900 * 110.99581 * 62.34139 * 11 10 9 30 30 H 1.09005 * 112.85342 * 294.68159 * 14 12 11 31 31 H 1.08993 * 113.61670 * 334.56670 * 15 14 12 32 32 H 1.09004 * 113.61332 * 105.47069 * 15 14 12 33 33 H 1.08992 * 113.61081 * 270.88126 * 16 15 14 34 34 H 1.08998 * 113.61009 * 139.98539 * 16 15 14 35 35 H 1.09001 * 113.61075 * 220.01856 * 17 16 15 36 36 H 1.08993 * 113.61916 * 89.11508 * 17 16 15 37 37 H 1.08993 * 110.51458 * 24.16844 * 20 18 12 38 38 H 1.09003 * 110.51252 * 261.45316 * 20 18 12 39 39 H 1.09006 * 110.51415 * 118.64396 * 21 20 18 40 40 H 1.09006 * 110.50942 * 241.21467 * 21 20 18 41 41 H 1.09003 * 110.37688 * 94.92305 * 22 21 20 42 42 H 1.08999 * 110.37865 * 217.25945 * 22 21 20 43 43 H 1.09002 * 117.49817 * 215.00100 * 24 9 7 44 44 H 1.08999 * 117.50320 * 0.03131 * 24 9 7 45 45 H 1.08995 * 117.49904 * 359.97438 * 25 9 7 46 46 H 1.08996 * 117.49682 * 144.97915 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0841 -1.1943 0.0291 9 6 1.2516 -2.4988 -0.0425 10 6 0.8461 -2.9821 -1.4364 11 7 2.0490 -3.3410 -2.1994 12 6 1.7116 -3.6677 -3.5914 13 1 0.6290 -3.6485 -3.7168 14 6 2.2396 -5.0632 -3.9300 15 6 1.6100 -5.6697 -5.1952 16 6 1.5810 -7.0105 -4.4427 17 6 1.5511 -6.1903 -3.1423 18 6 2.3517 -2.6394 -4.5261 19 1 2.0720 -2.8397 -5.5604 20 6 1.9298 -1.2094 -4.1221 21 6 3.1976 -0.3607 -4.3663 22 6 4.2383 -1.3763 -4.8875 23 8 3.7886 -2.6548 -4.3819 24 6 1.6219 -3.5617 0.9937 25 6 0.2985 -2.8020 1.1153 26 1 -0.4849 0.8400 0.0004 27 1 0.3106 -2.1869 -1.9551 28 1 0.2002 -3.8553 -1.3446 29 1 2.5428 -4.1026 -1.7588 30 1 3.3280 -5.1198 -3.9121 31 1 0.6198 -5.2750 -5.4224 32 1 2.2759 -5.6677 -6.0582 33 1 2.4892 -7.6003 -4.5662 34 1 0.6731 -7.5885 -4.6153 35 1 2.1694 -6.6086 -2.3480 36 1 0.5448 -5.9378 -2.8082 37 1 1.6458 -1.1777 -3.0703 38 1 1.1101 -0.8610 -4.7506 39 1 3.0048 0.4071 -5.1156 40 1 3.5390 0.0924 -3.4356 41 1 4.2496 -1.3827 -5.9775 42 1 5.2284 -1.1387 -4.4985 43 1 1.5765 -4.6054 0.6825 44 1 2.4098 -3.3172 1.7062 45 1 0.2164 -2.0580 1.9076 46 1 -0.6175 -3.3455 0.8840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866350421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:53 Heat of formation + Delta-G solvation = -20.087743 kcal Electronic energy + Delta-G solvation = -23636.891558 eV Core-core repulsion = 20526.923762 eV Total energy + Delta-G solvation = -3109.967796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86993 -39.25301 -38.52450 -35.46660 -33.86509 -32.70453 -30.95489 -28.17349 -27.38303 -26.46288 -25.30234 -24.10341 -22.85565 -22.15725 -21.36375 -20.84673 -20.10569 -17.99203 -17.45882 -16.83374 -16.65131 -16.33810 -16.22258 -16.05246 -15.43190 -14.89014 -14.58746 -14.49477 -14.24339 -13.81545 -13.45910 -13.29457 -13.17909 -12.90608 -12.80932 -12.65815 -12.51292 -12.39410 -12.32619 -12.19848 -11.98205 -11.90652 -11.38252 -11.35180 -11.23567 -11.07218 -10.92538 -10.76040 -10.46158 -10.26916 -9.86388 -8.84367 -8.00362 -6.05807 1.41203 1.41896 1.48729 2.48089 3.12637 3.28039 3.29973 3.64503 3.69456 3.82740 3.91023 3.97362 4.08668 4.16331 4.20051 4.36055 4.37927 4.49346 4.50829 4.62330 4.66538 4.73468 4.80031 4.85661 4.88174 4.90283 4.93411 4.95795 5.02555 5.06748 5.07797 5.10998 5.13295 5.21556 5.24830 5.32196 5.41107 5.63880 5.66680 5.69892 5.78953 5.92705 6.12299 6.49733 6.60125 6.85412 6.96558 7.58580 9.07827 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015147 B = 0.007224 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.115131 B = 3875.136388 C = 5242.284877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.030 3.970 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.471 4.471 8 H 0.041 0.959 9 C 0.032 3.968 10 C 0.128 3.872 11 N -0.659 5.659 12 C 0.105 3.895 13 H 0.058 0.942 14 C -0.116 4.116 15 C -0.128 4.128 16 C -0.129 4.129 17 C -0.142 4.142 18 C 0.098 3.902 19 H 0.075 0.925 20 C -0.155 4.155 21 C -0.149 4.149 22 C 0.050 3.950 23 O -0.376 6.376 24 C -0.191 4.191 25 C -0.164 4.164 26 H 0.255 0.745 27 H 0.042 0.958 28 H 0.002 0.998 29 H 0.335 0.665 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -9.292 -12.259 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.031 3.969 10 C -0.001 4.001 11 N -0.289 5.289 12 C -0.006 4.006 13 H 0.076 0.924 14 C -0.135 4.135 15 C -0.166 4.166 16 C -0.166 4.166 17 C -0.180 4.180 18 C 0.040 3.960 19 H 0.093 0.907 20 C -0.193 4.193 21 C -0.187 4.187 22 C -0.027 4.027 23 O -0.295 6.295 24 C -0.228 4.228 25 C -0.202 4.202 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.386 -8.674 -12.304 15.430 hybrid contribution -0.355 0.794 0.581 1.045 sum 3.031 -7.880 -11.723 14.447 Atomic orbital electron populations 1.70091 1.06602 1.26372 1.51949 1.25415 0.95321 1.00884 0.95291 0.86039 0.78724 0.80822 0.78559 1.19839 1.21374 1.20415 1.20423 0.91667 0.89997 1.48829 0.94082 1.18910 0.97780 0.93069 0.87140 1.21269 0.89661 0.95217 0.93932 1.60077 1.23634 1.44337 1.00882 1.21586 0.96916 0.92924 0.89128 0.92361 1.22865 1.00337 0.92243 0.98059 1.22888 1.00970 0.96345 0.96411 1.22736 1.02681 0.96076 0.95145 1.22938 1.00318 0.97154 0.97596 1.22978 0.81341 0.94452 0.97238 0.90692 1.22946 0.97694 0.95445 1.03228 1.22814 0.95982 0.98987 1.00901 1.23429 0.98029 0.82756 0.98492 1.89107 1.20399 1.35176 1.84801 1.22936 0.98181 0.96397 1.05275 1.22405 0.92228 1.01787 1.03767 0.93640 0.93956 0.98008 0.84620 0.89203 0.90102 0.90776 0.89421 0.90721 0.91653 0.91315 0.91105 0.91457 0.89750 0.93650 0.90671 0.89361 0.89489 0.91106 0.92582 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 12.74 21.45 0.27 -51.88 16 2 C 0.03 1.64 5.43 84.65 0.46 2.10 16 3 Si 0.93 44.55 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.47 -25.85 8.78 25.60 0.22 -25.62 16 8 H 0.04 2.34 7.81 -2.91 -0.02 2.31 16 9 C 0.03 1.54 1.59 -52.93 -0.08 1.45 16 10 C 0.13 5.57 4.66 86.30 0.40 5.97 16 11 N -0.66 -24.97 5.37 -491.56 -2.64 -27.61 16 12 C 0.10 3.27 1.83 44.91 0.08 3.35 16 13 H 0.06 1.87 7.47 -2.39 -0.02 1.85 16 14 C -0.12 -2.94 2.77 -10.27 -0.03 -2.97 16 15 C -0.13 -2.59 7.53 31.12 0.23 -2.36 16 16 C -0.13 -2.39 8.08 31.12 0.25 -2.14 16 17 C -0.14 -3.31 7.19 31.12 0.22 -3.09 16 18 C 0.10 3.05 3.05 31.09 0.09 3.15 16 19 H 0.08 1.99 8.12 -2.38 -0.02 1.97 16 20 C -0.16 -5.49 6.52 31.61 0.21 -5.29 16 21 C -0.15 -4.80 7.08 31.61 0.22 -4.58 16 22 C 0.05 1.40 7.65 72.48 0.55 1.95 16 23 O -0.38 -12.44 10.64 -148.98 -1.59 -14.02 16 24 C -0.19 -8.18 9.96 30.62 0.30 -7.87 16 25 C -0.16 -7.78 9.23 30.62 0.28 -7.50 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.04 2.08 7.07 -2.39 -0.02 2.06 16 28 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 29 H 0.34 12.34 7.83 -89.69 -0.70 11.63 16 30 H 0.09 2.50 7.76 -2.38 -0.02 2.48 16 31 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 37 H 0.07 3.19 5.49 -2.39 -0.01 3.17 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 40 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -59.55 360.89 1.74 -57.82 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.23 Total: 32.58 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.43 Total: -43.46 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.37 Total: -79.49 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.59 Total: -14.02 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.55 1.74 -57.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866350421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.731 kcal (2) G-P(sol) polarization free energy of solvation -59.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds