Wall clock time and date at job start Tue Mar 31 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48503 * 109.46879 * 270.00198 * 3 2 1 5 5 H 1.48503 * 109.47184 * 30.00037 * 3 2 1 6 6 H 1.48497 * 109.47060 * 149.99994 * 3 2 1 7 7 C 1.38807 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99866 * 157.46564 * 7 2 1 9 9 N 1.36937 * 120.00337 * 337.47292 * 7 2 1 10 10 C 1.46504 * 119.99618 * 326.33267 * 9 7 2 11 11 C 1.53000 * 109.47036 * 264.43716 * 10 9 7 12 12 H 1.08996 * 110.32344 * 307.22282 * 11 10 9 13 13 C 1.54751 * 110.35888 * 184.99820 * 11 10 9 14 14 C 1.53460 * 103.63035 * 217.36629 * 13 11 10 15 15 C 1.52652 * 115.84522 * 230.97221 * 14 13 11 16 16 C 1.53995 * 86.73310 * 217.20665 * 15 14 13 17 17 C 1.52656 * 115.82331 * 129.61617 * 14 13 11 18 18 C 1.53436 * 105.21127 * 0.31107 * 14 13 11 19 19 O 1.44523 * 110.35535 * 69.55478 * 11 10 9 20 20 C 1.46498 * 120.00289 * 146.33412 * 9 7 2 21 21 C 1.54264 * 110.03368 * 57.16840 * 20 9 7 22 22 C 1.54896 * 104.19413 * 217.10700 * 21 20 9 23 23 C 1.54890 * 102.74889 * 37.94136 * 22 21 20 24 24 C 1.53873 * 110.03329 * 299.99864 * 20 9 7 25 25 H 0.96996 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46695 * 144.44414 * 10 9 7 27 27 H 1.08995 * 109.47366 * 24.44055 * 10 9 7 28 28 H 1.08996 * 110.59361 * 335.90403 * 13 11 10 29 29 H 1.09002 * 110.58667 * 98.83025 * 13 11 10 30 30 H 1.08999 * 113.66997 * 331.66392 * 15 14 13 31 31 H 1.08998 * 113.67032 * 102.74318 * 15 14 13 32 32 H 1.09001 * 113.57404 * 269.97807 * 16 15 14 33 33 H 1.08996 * 113.57929 * 139.18295 * 16 15 14 34 34 H 1.09000 * 113.67153 * 257.27406 * 17 14 13 35 35 H 1.09002 * 113.66827 * 28.25846 * 17 14 13 36 36 H 1.08998 * 110.42351 * 141.95557 * 18 14 13 37 37 H 1.08995 * 110.42855 * 264.30963 * 18 14 13 38 38 H 1.09000 * 110.01580 * 178.61066 * 20 9 7 39 39 H 1.09007 * 110.48487 * 335.77569 * 21 20 9 40 40 H 1.08994 * 110.49323 * 98.42452 * 21 20 9 41 41 H 1.08997 * 110.75302 * 279.62320 * 22 21 20 42 42 H 1.09000 * 110.75582 * 156.25510 * 22 21 20 43 43 H 1.09006 * 110.48053 * 203.38096 * 23 22 21 44 44 H 1.08992 * 110.48992 * 80.73756 * 23 22 21 45 45 H 1.09004 * 110.03541 * 238.57129 * 24 20 9 46 46 H 1.09004 * 110.03431 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0284 -1.2380 -0.3579 9 7 1.4040 -2.3426 0.4554 10 6 0.4334 -2.2694 1.5504 11 6 1.1370 -2.5662 2.8762 12 1 1.6835 -3.5071 2.8124 13 6 0.1088 -2.6180 4.0316 14 6 0.8541 -1.9733 5.2080 15 6 0.8565 -2.7692 6.5106 16 6 0.7330 -1.4158 7.2349 17 6 0.1052 -0.8637 5.9417 18 6 2.2334 -1.5952 4.6522 19 8 2.0313 -1.4854 3.2237 20 6 1.7258 -3.6359 -0.1529 21 6 3.2420 -3.9032 -0.0552 22 6 3.5895 -4.6117 -1.3880 23 6 2.6965 -3.8690 -2.4128 24 6 1.3790 -3.6143 -1.6519 25 1 -0.4849 0.8400 0.0004 26 1 -0.3559 -3.0028 1.3858 27 1 -0.0005 -1.2702 1.5851 28 1 -0.7809 -2.0412 3.7791 29 1 -0.1550 -3.6497 4.2639 30 1 -0.0154 -3.4118 6.6324 31 1 1.7961 -3.2859 6.7060 32 1 1.6938 -0.9636 7.4807 33 1 0.0449 -1.4347 8.0800 34 1 0.4458 0.1390 5.6834 35 1 -0.9791 -0.9667 5.9012 36 1 2.5610 -0.6409 5.0645 37 1 2.9608 -2.3753 4.8766 38 1 1.1728 -4.4312 0.3468 39 1 3.7899 -2.9648 0.0321 40 1 3.4609 -4.5540 0.7912 41 1 3.3285 -5.6690 -1.3429 42 1 4.6444 -4.4831 -1.6302 43 1 2.5174 -4.4952 -3.2869 44 1 3.1563 -2.9253 -2.7062 45 1 0.6583 -4.3996 -1.8798 46 1 0.9708 -2.6416 -1.9267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878121928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:04 Heat of formation + Delta-G solvation = -29.088710 kcal Electronic energy + Delta-G solvation = -23550.620996 eV Core-core repulsion = 20440.262890 eV Total energy + Delta-G solvation = -3110.358107 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.35307 -39.33728 -37.77575 -35.85043 -33.12088 -31.79018 -29.54075 -29.31770 -28.11000 -26.87786 -26.66145 -24.47292 -23.16466 -21.81844 -21.28685 -20.68678 -19.47235 -18.26919 -17.12206 -16.87182 -16.52415 -16.34096 -16.13646 -15.85537 -15.67549 -14.97811 -14.65225 -14.38753 -14.07594 -14.03706 -13.60586 -13.35801 -12.99616 -12.88031 -12.71438 -12.61042 -12.47667 -12.15441 -12.02582 -11.91507 -11.77765 -11.76441 -11.70508 -11.61635 -11.30348 -11.20849 -11.13198 -11.03844 -10.88988 -10.41770 -10.35029 -8.44307 -7.72314 -5.23347 1.41857 1.45735 1.55290 2.57378 3.16732 3.35669 3.53228 3.57589 3.71776 3.86079 3.95115 4.00206 4.05119 4.14463 4.25224 4.38720 4.47692 4.53939 4.69405 4.70888 4.77941 4.79254 4.86004 4.87330 4.91431 4.94708 4.96182 4.98554 5.03074 5.04784 5.10586 5.11574 5.23347 5.25330 5.26880 5.35140 5.42886 5.53360 5.59808 5.64377 5.69489 5.80196 5.91610 6.27218 6.60281 7.29742 8.02969 8.50081 9.25729 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.006472 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.333645 B = 4325.007807 C = 5398.009186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.036 4.036 3 Si 0.938 3.062 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.282 1.282 7 C -0.216 4.216 8 H 0.047 0.953 9 N -0.585 5.585 10 C 0.149 3.851 11 C 0.068 3.932 12 H 0.047 0.953 13 C -0.129 4.129 14 C -0.120 4.120 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.058 3.942 19 O -0.382 6.382 20 C 0.160 3.840 21 C -0.129 4.129 22 C -0.110 4.110 23 C -0.113 4.113 24 C -0.130 4.130 25 H 0.244 0.756 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -9.243 10.341 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.231 4.231 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.347 4.347 8 H 0.064 0.936 9 N -0.304 5.304 10 C 0.022 3.978 11 C 0.008 3.992 12 H 0.065 0.935 13 C -0.167 4.167 14 C -0.120 4.120 15 C -0.152 4.152 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.019 4.019 19 O -0.302 6.302 20 C 0.054 3.946 21 C -0.168 4.168 22 C -0.148 4.148 23 C -0.151 4.151 24 C -0.169 4.169 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.887 -8.950 10.174 13.681 hybrid contribution 0.158 1.310 -0.156 1.328 sum 2.045 -7.640 10.018 12.764 Atomic orbital electron populations 1.70084 1.06268 1.25074 1.55208 1.25402 0.95421 1.00363 1.01913 0.85718 0.78533 0.81798 0.77061 1.21456 1.22279 1.20803 1.18802 0.93676 0.86665 1.35581 0.93562 1.44035 1.48569 1.02328 1.35492 1.20980 0.90286 1.01944 0.84550 1.23764 0.89959 0.88944 0.96499 0.93503 1.22792 0.98352 1.01631 0.93948 1.22526 0.95761 0.98696 0.95022 1.22802 1.03078 0.96539 0.92757 1.22852 1.01376 0.96089 0.96283 1.22867 1.00006 0.97197 0.96874 1.23165 0.95446 1.01205 0.82104 1.89399 1.67437 1.51383 1.21932 1.21283 0.94196 0.87079 0.92079 1.22692 0.97407 0.99195 0.97502 1.22393 0.99102 0.99293 0.93997 1.22216 0.95540 0.99343 0.98014 1.22511 0.97460 0.99896 0.97040 0.94632 0.94558 0.90870 0.91971 0.89125 0.88704 0.90546 0.89884 0.89824 0.92925 0.89634 0.89950 0.91909 0.92381 0.93704 0.92290 0.90066 0.91376 0.90658 0.93891 0.92368 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 11.34 21.65 0.25 -54.91 16 2 C -0.04 -2.05 4.91 84.86 0.42 -1.63 16 3 Si 0.94 47.91 29.61 68.60 2.03 49.94 16 4 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 5 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 6 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.22 -12.09 8.03 84.03 0.67 -11.41 16 8 H 0.05 2.66 6.65 -2.91 -0.02 2.64 16 9 N -0.59 -29.14 2.39 -674.03 -1.61 -30.75 16 10 C 0.15 7.12 4.79 86.38 0.41 7.54 16 11 C 0.07 2.75 3.55 31.19 0.11 2.86 16 12 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 13 C -0.13 -4.12 6.15 31.35 0.19 -3.93 16 14 C -0.12 -3.34 1.17 -52.12 -0.06 -3.40 16 15 C -0.11 -2.30 7.30 30.81 0.22 -2.08 16 16 C -0.13 -2.46 7.95 31.25 0.25 -2.21 16 17 C -0.13 -3.37 7.22 30.81 0.22 -3.15 16 18 C 0.06 1.90 6.90 72.13 0.50 2.40 16 19 O -0.38 -17.20 11.35 -148.98 -1.69 -18.89 16 20 C 0.16 6.66 3.42 45.71 0.16 6.82 16 21 C -0.13 -4.77 6.40 31.67 0.20 -4.57 16 22 C -0.11 -3.29 6.91 31.89 0.22 -3.07 16 23 C -0.11 -3.81 6.83 31.67 0.22 -3.59 16 24 C -0.13 -5.20 6.28 31.32 0.20 -5.00 16 25 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 27 H 0.07 4.12 5.34 -2.39 -0.01 4.10 16 28 H 0.06 2.14 7.71 -2.39 -0.02 2.12 16 29 H 0.09 2.40 7.97 -2.39 -0.02 2.39 16 30 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.41 8.05 -2.39 -0.02 1.39 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.50 8.05 -2.39 -0.02 1.48 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.59 7.92 -2.39 -0.02 2.57 16 37 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 38 H 0.06 2.24 7.91 -2.39 -0.02 2.22 16 39 H 0.04 1.94 6.30 -2.38 -0.02 1.93 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.04 1.84 7.37 -2.38 -0.02 1.82 16 Total: -1.00 -65.01 351.06 3.83 -61.18 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.92 Total: 17.87 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.93 Total: -24.43 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -1.37 Total: -85.67 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -1.69 Total: -18.89 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -65.01 3.83 -61.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878121928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.096 kcal (2) G-P(sol) polarization free energy of solvation -65.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds