Wall clock time and date at job start Tue Mar 31 2020 01:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48505 * 109.46895 * 273.03224 * 3 2 1 5 5 H 1.48503 * 109.46807 * 33.02875 * 3 2 1 6 6 H 1.48494 * 109.47172 * 153.02915 * 3 2 1 7 7 C 1.38817 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99941 * 33.02895 * 7 2 1 9 9 N 1.36932 * 120.00062 * 213.02218 * 7 2 1 10 10 C 1.46506 * 120.00029 * 38.13850 * 9 7 2 11 11 C 1.52999 * 109.47121 * 95.56020 * 10 9 7 12 12 H 1.09001 * 110.24686 * 60.55979 * 11 10 9 13 13 C 1.55188 * 110.27282 * 182.66825 * 11 10 9 14 14 C 1.54018 * 100.75500 * 154.08509 * 13 11 10 15 15 C 1.52407 * 115.92561 * 96.36444 * 14 13 11 16 16 C 1.54031 * 86.64059 * 93.63885 * 15 14 13 17 17 C 1.52400 * 115.93339 * 198.17932 * 14 13 11 18 18 C 1.53084 * 103.78662 * 327.28095 * 14 13 11 19 19 O 1.43591 * 107.17460 * 19.97173 * 18 14 13 20 20 C 1.46502 * 120.00268 * 218.13183 * 9 7 2 21 21 C 1.54269 * 110.03138 * 62.70275 * 20 9 7 22 22 C 1.54964 * 104.15922 * 217.13825 * 21 20 9 23 23 C 1.54886 * 102.77616 * 37.88930 * 22 21 20 24 24 C 1.53875 * 110.03187 * 305.48568 * 20 9 7 25 25 H 0.96997 * 120.00231 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47250 * 215.56313 * 10 9 7 27 27 H 1.08999 * 109.46596 * 335.56123 * 10 9 7 28 28 H 1.08996 * 111.16152 * 271.95233 * 13 11 10 29 29 H 1.08998 * 111.16600 * 36.21090 * 13 11 10 30 30 H 1.08996 * 113.68048 * 208.07492 * 15 14 13 31 31 H 1.09002 * 113.68359 * 339.20164 * 15 14 13 32 32 H 1.09001 * 113.57137 * 269.76926 * 16 15 14 33 33 H 1.09004 * 113.63646 * 139.02447 * 16 15 14 34 34 H 1.08995 * 113.68536 * 20.80059 * 17 14 13 35 35 H 1.09005 * 113.68353 * 151.83547 * 17 14 13 36 36 H 1.09003 * 109.89621 * 260.58403 * 18 14 13 37 37 H 1.09001 * 110.04064 * 139.44457 * 18 14 13 38 38 H 1.08998 * 110.01566 * 184.09318 * 20 9 7 39 39 H 1.08998 * 110.48625 * 335.78683 * 21 20 9 40 40 H 1.08997 * 110.48484 * 98.42743 * 21 20 9 41 41 H 1.09003 * 110.71864 * 279.57203 * 22 21 20 42 42 H 1.09003 * 110.76167 * 156.22255 * 22 21 20 43 43 H 1.09003 * 110.48290 * 203.40223 * 23 22 21 44 44 H 1.08999 * 110.48612 * 80.76452 * 23 22 21 45 45 H 1.08996 * 110.03182 * 238.56733 * 24 20 9 46 46 H 1.09001 * 110.03174 * 359.95221 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4335 2.0835 -1.3982 5 1 1.4810 2.6333 0.7632 6 1 3.5782 1.4226 0.6350 7 6 2.0103 -1.2021 0.0005 8 1 1.6012 -2.0621 -0.5089 9 7 3.2137 -1.2976 0.6468 10 6 3.4179 -0.6041 1.9211 11 6 3.1487 -1.5704 3.0764 12 1 3.8333 -2.4172 3.0273 13 6 3.2943 -0.8367 4.4361 14 6 2.3770 -1.6962 5.3262 15 6 3.0687 -2.7775 6.1479 16 6 3.1278 -1.7450 7.2894 17 6 1.9201 -1.0527 6.6299 18 6 1.2754 -2.1631 4.3713 19 8 1.7863 -2.0280 3.0361 20 6 4.2971 -2.0932 0.0641 21 6 4.7196 -1.4962 -1.2941 22 6 5.0363 -2.7344 -2.1704 23 6 3.9486 -3.7482 -1.7367 24 6 3.8075 -3.5247 -0.2169 25 1 -0.4850 0.8400 -0.0004 26 1 4.4456 -0.2457 1.9792 27 1 2.7337 0.2418 1.9880 28 1 4.3247 -0.8650 4.7901 29 1 2.9307 0.1888 4.3709 30 1 2.4329 -3.6355 6.3660 31 1 4.0482 -3.0608 5.7626 32 1 4.0342 -1.1396 7.2831 33 1 2.9070 -2.1652 8.2706 34 1 1.9863 0.0352 6.6280 35 1 0.9564 -1.4185 6.9845 36 1 0.3893 -1.5403 4.4943 37 1 1.0264 -3.2056 4.5695 38 1 5.1495 -2.1167 0.7430 39 1 3.9023 -0.9205 -1.7286 40 1 5.6064 -0.8733 -1.1777 41 1 6.0323 -3.1184 -1.9498 42 1 4.9397 -2.4935 -3.2291 43 1 4.2733 -4.7679 -1.9438 44 1 3.0066 -3.5367 -2.2426 45 1 4.4228 -4.2429 0.3249 46 1 2.7640 -3.6276 0.0811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878121929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:08 Heat of formation + Delta-G solvation = -8.417073 kcal Electronic energy + Delta-G solvation = -23628.216376 eV Core-core repulsion = 20518.754659 eV Total energy + Delta-G solvation = -3109.461717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23812 -37.85212 -36.48030 -34.13214 -31.51274 -30.26916 -28.47562 -27.86760 -26.80504 -25.78060 -25.22735 -22.41053 -22.17199 -20.57681 -19.88561 -18.90261 -18.38237 -16.43576 -16.10542 -15.27053 -15.14736 -15.04785 -14.82700 -14.32796 -14.09267 -13.34701 -13.28301 -12.91049 -12.71999 -12.52988 -12.27625 -12.11372 -11.96618 -11.72851 -11.18308 -11.00828 -10.93688 -10.68214 -10.57413 -10.45667 -10.40388 -10.29152 -10.20243 -10.05230 -9.90855 -9.87831 -9.85551 -9.62631 -9.33012 -8.66603 -8.21687 -6.59059 -5.87628 -3.14140 3.44626 3.56952 3.60928 4.35923 4.54101 4.60657 4.69773 4.80786 4.87529 5.04288 5.32273 5.35365 5.43850 5.46038 5.51195 5.63069 5.67131 5.70204 5.75272 5.78387 5.87611 5.91591 6.03684 6.10807 6.14502 6.19074 6.25366 6.28246 6.29007 6.34774 6.41333 6.45868 6.49491 6.51196 6.54935 6.60652 6.66398 6.81773 6.96961 7.02810 7.24012 7.27057 7.92312 8.22583 8.61355 9.19153 9.92373 10.34583 11.28816 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.006510 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.902678 B = 4300.193037 C = 5178.009388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.048 3.952 3 Si 0.838 3.162 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.588 5.588 10 C 0.150 3.850 11 C 0.069 3.931 12 H 0.053 0.947 13 C -0.131 4.131 14 C -0.116 4.116 15 C -0.125 4.125 16 C -0.139 4.139 17 C -0.126 4.126 18 C 0.062 3.938 19 O -0.334 6.334 20 C 0.172 3.828 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.117 4.117 24 C -0.132 4.132 25 H 0.258 0.742 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.567 -4.317 9.823 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.153 4.153 3 Si 0.665 3.335 4 H -0.221 1.221 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.308 5.308 10 C 0.024 3.976 11 C 0.009 3.991 12 H 0.071 0.929 13 C -0.169 4.169 14 C -0.116 4.116 15 C -0.162 4.162 16 C -0.176 4.176 17 C -0.163 4.163 18 C -0.016 4.016 19 O -0.252 6.252 20 C 0.065 3.935 21 C -0.177 4.177 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.270 -4.270 9.624 13.388 hybrid contribution 0.488 1.119 0.228 1.241 sum 8.758 -3.151 9.852 13.553 Atomic orbital electron populations 1.70082 1.06192 1.26239 1.49525 1.25396 0.94623 0.97081 0.98189 0.87467 0.81772 0.86680 0.77548 1.22129 1.22571 1.18935 1.18395 0.93289 0.94915 1.30840 0.90810 1.44106 1.11316 1.57387 1.17982 1.21414 0.97774 0.93628 0.84805 1.23830 0.84632 0.96278 0.94403 0.92923 1.22993 0.98945 0.99541 0.95409 1.22457 0.97149 0.97255 0.94733 1.22763 1.00815 0.96446 0.96217 1.22880 0.98700 0.98389 0.97665 1.22700 0.98189 1.00121 0.95315 1.22869 0.95848 0.99452 0.83391 1.88870 1.26202 1.87452 1.22701 1.21040 0.89488 0.90536 0.92435 1.22875 1.00393 0.96912 0.97492 1.22417 0.97857 0.96855 0.98826 1.22248 0.98868 0.97252 0.97120 1.22525 1.02661 0.97217 0.94667 0.93224 0.93952 0.92027 0.90841 0.90412 0.90023 0.91370 0.90384 0.91738 0.91264 0.90009 0.91933 0.92636 0.93424 0.90013 0.93682 0.92819 0.92771 0.93403 0.91685 0.93958 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.96 13.97 55.49 0.78 -26.18 16 2 C 0.05 1.37 5.00 -17.43 -0.09 1.29 16 3 Si 0.84 21.57 26.37 -169.99 -4.48 17.08 16 4 H -0.29 -7.72 7.11 56.52 0.40 -7.31 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.26 -6.42 5.86 56.52 0.33 -6.09 16 7 C -0.25 -6.72 7.87 -15.06 -0.12 -6.84 16 8 H 0.07 2.22 7.05 -52.49 -0.37 1.85 16 9 N -0.59 -13.66 1.93 -164.38 -0.32 -13.98 16 10 C 0.15 3.25 3.55 -4.04 -0.01 3.23 16 11 C 0.07 1.32 3.72 -25.57 -0.10 1.22 16 12 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 13 C -0.13 -2.01 5.77 -25.04 -0.14 -2.16 16 14 C -0.12 -1.63 0.94 -154.58 -0.15 -1.78 16 15 C -0.13 -1.47 7.32 -26.50 -0.19 -1.67 16 16 C -0.14 -1.43 7.96 -25.69 -0.20 -1.63 16 17 C -0.13 -1.48 7.41 -26.50 -0.20 -1.68 16 18 C 0.06 1.08 7.31 37.20 0.27 1.35 16 19 O -0.33 -7.41 10.73 -35.23 -0.38 -7.79 16 20 C 0.17 3.43 3.42 -66.81 -0.23 3.20 16 21 C -0.14 -2.61 6.43 -25.03 -0.16 -2.77 16 22 C -0.12 -1.96 6.91 -24.70 -0.17 -2.13 16 23 C -0.12 -1.99 6.83 -25.07 -0.17 -2.17 16 24 C -0.13 -2.48 6.15 -25.61 -0.16 -2.64 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 27 H 0.06 1.48 4.69 -51.93 -0.24 1.23 16 28 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 29 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 30 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 31 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 37 H 0.06 0.89 7.88 -51.93 -0.41 0.49 16 38 H 0.05 0.87 7.93 -51.93 -0.41 0.46 16 39 H 0.08 1.81 7.23 -51.93 -0.38 1.43 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.78 6.68 -51.93 -0.35 1.44 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -30.28 347.38 -9.51 -39.79 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.53 Total: 1.02 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.82 Total: -15.17 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.46 Total: -40.16 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.38 Total: -7.79 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.48 Total: 17.08 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.28 -9.51 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878121929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.370 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds