Wall clock time and date at job start Tue Mar 31 2020 01:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00003 * 2 1 4 4 H 1.48505 * 109.46895 * 273.03224 * 3 2 1 5 5 H 1.48503 * 109.46807 * 33.02875 * 3 2 1 6 6 H 1.48494 * 109.47172 * 153.02915 * 3 2 1 7 7 C 1.38817 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99941 * 33.02895 * 7 2 1 9 9 N 1.36932 * 120.00062 * 213.02218 * 7 2 1 10 10 C 1.46506 * 120.00029 * 38.13850 * 9 7 2 11 11 C 1.52999 * 109.47121 * 95.56020 * 10 9 7 12 12 H 1.09001 * 110.24686 * 60.55979 * 11 10 9 13 13 C 1.55188 * 110.27282 * 182.66825 * 11 10 9 14 14 C 1.54018 * 100.75500 * 154.08509 * 13 11 10 15 15 C 1.52407 * 115.92561 * 96.36444 * 14 13 11 16 16 C 1.54031 * 86.64059 * 93.63885 * 15 14 13 17 17 C 1.52400 * 115.93339 * 198.17932 * 14 13 11 18 18 C 1.53084 * 103.78662 * 327.28095 * 14 13 11 19 19 O 1.43591 * 107.17460 * 19.97173 * 18 14 13 20 20 C 1.46502 * 120.00268 * 218.13183 * 9 7 2 21 21 C 1.54269 * 110.03138 * 62.70275 * 20 9 7 22 22 C 1.54964 * 104.15922 * 217.13825 * 21 20 9 23 23 C 1.54886 * 102.77616 * 37.88930 * 22 21 20 24 24 C 1.53875 * 110.03187 * 305.48568 * 20 9 7 25 25 H 0.96997 * 120.00231 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47250 * 215.56313 * 10 9 7 27 27 H 1.08999 * 109.46596 * 335.56123 * 10 9 7 28 28 H 1.08996 * 111.16152 * 271.95233 * 13 11 10 29 29 H 1.08998 * 111.16600 * 36.21090 * 13 11 10 30 30 H 1.08996 * 113.68048 * 208.07492 * 15 14 13 31 31 H 1.09002 * 113.68359 * 339.20164 * 15 14 13 32 32 H 1.09001 * 113.57137 * 269.76926 * 16 15 14 33 33 H 1.09004 * 113.63646 * 139.02447 * 16 15 14 34 34 H 1.08995 * 113.68536 * 20.80059 * 17 14 13 35 35 H 1.09005 * 113.68353 * 151.83547 * 17 14 13 36 36 H 1.09003 * 109.89621 * 260.58403 * 18 14 13 37 37 H 1.09001 * 110.04064 * 139.44457 * 18 14 13 38 38 H 1.08998 * 110.01566 * 184.09318 * 20 9 7 39 39 H 1.08998 * 110.48625 * 335.78683 * 21 20 9 40 40 H 1.08997 * 110.48484 * 98.42743 * 21 20 9 41 41 H 1.09003 * 110.71864 * 279.57203 * 22 21 20 42 42 H 1.09003 * 110.76167 * 156.22255 * 22 21 20 43 43 H 1.09003 * 110.48290 * 203.40223 * 23 22 21 44 44 H 1.08999 * 110.48612 * 80.76452 * 23 22 21 45 45 H 1.08996 * 110.03182 * 238.56733 * 24 20 9 46 46 H 1.09001 * 110.03174 * 359.95221 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4335 2.0835 -1.3982 5 1 1.4810 2.6333 0.7632 6 1 3.5782 1.4226 0.6350 7 6 2.0103 -1.2021 0.0005 8 1 1.6012 -2.0621 -0.5089 9 7 3.2137 -1.2976 0.6468 10 6 3.4179 -0.6041 1.9211 11 6 3.1487 -1.5704 3.0764 12 1 3.8333 -2.4172 3.0273 13 6 3.2943 -0.8367 4.4361 14 6 2.3770 -1.6962 5.3262 15 6 3.0687 -2.7775 6.1479 16 6 3.1278 -1.7450 7.2894 17 6 1.9201 -1.0527 6.6299 18 6 1.2754 -2.1631 4.3713 19 8 1.7863 -2.0280 3.0361 20 6 4.2971 -2.0932 0.0641 21 6 4.7196 -1.4962 -1.2941 22 6 5.0363 -2.7344 -2.1704 23 6 3.9486 -3.7482 -1.7367 24 6 3.8075 -3.5247 -0.2169 25 1 -0.4850 0.8400 -0.0004 26 1 4.4456 -0.2457 1.9792 27 1 2.7337 0.2418 1.9880 28 1 4.3247 -0.8650 4.7901 29 1 2.9307 0.1888 4.3709 30 1 2.4329 -3.6355 6.3660 31 1 4.0482 -3.0608 5.7626 32 1 4.0342 -1.1396 7.2831 33 1 2.9070 -2.1652 8.2706 34 1 1.9863 0.0352 6.6280 35 1 0.9564 -1.4185 6.9845 36 1 0.3893 -1.5403 4.4943 37 1 1.0264 -3.2056 4.5695 38 1 5.1495 -2.1167 0.7430 39 1 3.9023 -0.9205 -1.7286 40 1 5.6064 -0.8733 -1.1777 41 1 6.0323 -3.1184 -1.9498 42 1 4.9397 -2.4935 -3.2291 43 1 4.2733 -4.7679 -1.9438 44 1 3.0066 -3.5367 -2.2426 45 1 4.4228 -4.2429 0.3249 46 1 2.7640 -3.6276 0.0811 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878121929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:07 Heat of formation + Delta-G solvation = -25.418655 kcal Electronic energy + Delta-G solvation = -23628.953620 eV Core-core repulsion = 20518.754659 eV Total energy + Delta-G solvation = -3110.198961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43754 -39.42672 -37.80523 -35.88052 -33.56699 -31.78345 -29.76880 -29.35350 -28.43589 -26.98985 -26.66962 -24.20769 -23.20946 -22.10932 -21.29243 -20.64984 -19.51100 -18.25769 -17.56539 -16.88371 -16.74441 -16.43542 -16.06345 -15.85180 -15.64789 -14.89408 -14.74117 -14.53961 -14.09638 -14.01967 -13.94835 -13.68257 -13.13434 -12.92345 -12.74243 -12.66795 -12.55930 -12.25021 -12.03850 -11.90417 -11.81062 -11.72449 -11.70272 -11.46063 -11.33221 -11.25813 -11.16431 -11.09391 -11.01354 -10.42441 -10.19518 -8.52684 -8.10090 -5.31439 1.34868 1.43917 1.51140 2.53744 2.97829 3.13964 3.44626 3.55955 3.57862 3.77916 3.93363 3.98861 4.01629 4.10646 4.23537 4.31387 4.39105 4.45854 4.62175 4.68600 4.76219 4.78549 4.79574 4.83080 4.86837 4.90669 4.92675 4.94274 4.96228 4.96582 5.02243 5.11261 5.17708 5.20698 5.24003 5.31040 5.33437 5.42094 5.52645 5.54972 5.67131 5.70364 6.08077 6.36754 6.49501 7.18121 7.84431 8.26298 9.11541 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.006510 C = 0.005406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.902678 B = 4300.193037 C = 5178.009388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.011 4.011 3 Si 0.902 3.098 4 H -0.301 1.301 5 H -0.307 1.307 6 H -0.237 1.237 7 C -0.214 4.214 8 H 0.030 0.970 9 N -0.598 5.598 10 C 0.143 3.857 11 C 0.069 3.931 12 H 0.061 0.939 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.124 4.124 17 C -0.126 4.126 18 C 0.055 3.945 19 O -0.385 6.385 20 C 0.163 3.837 21 C -0.138 4.138 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.254 0.746 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.035 0.965 45 H 0.068 0.932 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.410 -4.764 11.642 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.730 3.270 4 H -0.230 1.230 5 H -0.235 1.235 6 H -0.161 1.161 7 C -0.344 4.344 8 H 0.047 0.953 9 N -0.318 5.318 10 C 0.017 3.983 11 C 0.009 3.991 12 H 0.079 0.921 13 C -0.159 4.159 14 C -0.119 4.119 15 C -0.159 4.159 16 C -0.161 4.161 17 C -0.164 4.164 18 C -0.022 4.022 19 O -0.305 6.305 20 C 0.057 3.943 21 C -0.178 4.178 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.051 0.949 28 H 0.123 0.877 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.172 -4.723 11.462 17.374 hybrid contribution -0.742 1.112 -0.351 1.382 sum 11.429 -3.611 11.112 16.344 Atomic orbital electron populations 1.70201 1.07898 1.26540 1.53405 1.25877 0.95056 1.00185 0.99574 0.86436 0.81483 0.82266 0.76846 1.22997 1.23518 1.16060 1.18115 0.94323 0.93064 1.28888 0.95269 1.44197 1.10936 1.57869 1.18845 1.21522 0.98539 0.93319 0.84895 1.23753 0.83593 0.96268 0.95445 0.92116 1.22926 1.01009 0.98595 0.93399 1.22517 0.95982 0.98639 0.94736 1.22787 1.00732 0.96307 0.96048 1.22829 0.98069 0.97309 0.97866 1.22749 0.99457 1.00247 0.93902 1.23023 0.96659 0.99792 0.82751 1.88808 1.28043 1.87805 1.25822 1.21323 0.89217 0.90231 0.93484 1.22825 0.99729 0.98044 0.97172 1.22387 0.98826 0.94752 0.98770 1.22230 0.98261 0.99455 0.95419 1.22438 1.00250 0.97547 0.96381 0.93704 0.91043 0.94902 0.87681 0.91424 0.89513 0.90853 0.89315 0.89892 0.91243 0.89499 0.93535 0.91907 0.90582 0.94023 0.91635 0.89544 0.91868 0.90446 0.94600 0.91288 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.85 13.97 21.65 0.30 -60.55 16 2 C -0.01 -0.64 5.00 84.86 0.42 -0.22 16 3 Si 0.90 46.30 26.37 68.60 1.81 48.11 16 4 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 5 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 6 H -0.24 -10.95 5.86 99.48 0.58 -10.37 16 7 C -0.21 -12.24 7.87 84.04 0.66 -11.57 16 8 H 0.03 1.91 7.05 -2.91 -0.02 1.89 16 9 N -0.60 -27.86 1.93 -673.99 -1.30 -29.16 16 10 C 0.14 6.03 3.55 86.38 0.31 6.34 16 11 C 0.07 2.58 3.72 31.34 0.12 2.69 16 12 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.12 -3.47 5.77 31.69 0.18 -3.29 16 14 C -0.12 -3.13 0.94 -52.23 -0.05 -3.18 16 15 C -0.12 -2.48 7.32 30.75 0.23 -2.25 16 16 C -0.12 -2.05 7.96 31.27 0.25 -1.80 16 17 C -0.13 -2.67 7.41 30.75 0.23 -2.44 16 18 C 0.05 1.93 7.31 72.01 0.53 2.46 16 19 O -0.39 -17.64 10.73 -148.98 -1.60 -19.24 16 20 C 0.16 6.24 3.42 45.72 0.16 6.40 16 21 C -0.14 -5.00 6.43 31.70 0.20 -4.80 16 22 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 23 C -0.12 -3.81 6.83 31.67 0.22 -3.59 16 24 C -0.13 -4.70 6.15 31.32 0.19 -4.51 16 25 H 0.25 15.82 8.31 -92.71 -0.77 15.05 16 26 H 0.07 2.57 8.08 -2.39 -0.02 2.55 16 27 H 0.03 1.57 4.69 -2.39 -0.01 1.56 16 28 H 0.10 2.34 8.06 -2.39 -0.02 2.32 16 29 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 30 H 0.09 1.69 8.03 -2.39 -0.02 1.67 16 31 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 35 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 1.73 8.08 -2.39 -0.02 1.72 16 37 H 0.06 2.06 7.88 -2.39 -0.02 2.04 16 38 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 39 H 0.04 1.84 7.23 -2.39 -0.02 1.82 16 40 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.03 1.62 6.68 -2.39 -0.02 1.60 16 Total: -1.00 -70.95 347.38 3.87 -67.08 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.79 Total: 16.53 kcal Atomic # 6 Polarization: -26.63 SS G_CDS: 3.86 Total: -22.77 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -1.00 Total: -89.71 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -1.60 Total: -19.24 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.81 Total: 48.11 kcal Total: -70.95 3.87 -67.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878121929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.666 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds