Wall clock time and date at job start Tue Mar 31 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47046 * 270.00274 * 3 2 1 5 5 H 1.48497 * 109.46909 * 30.00091 * 3 2 1 6 6 H 1.48499 * 109.46881 * 150.00211 * 3 2 1 7 7 C 1.37881 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99663 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00174 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47199 * 176.90243 * 9 7 2 11 11 C 1.46895 * 111.00171 * 199.51049 * 10 9 7 12 12 C 1.52997 * 109.47139 * 71.67271 * 11 10 9 13 13 C 1.53000 * 117.50213 * 244.15301 * 12 11 10 14 14 C 1.52999 * 117.50254 * 175.49442 * 12 11 10 15 15 C 1.46900 * 110.99560 * 75.55883 * 10 9 7 16 16 C 1.53006 * 109.46980 * 189.99869 * 15 10 9 17 17 H 1.08993 * 110.55261 * 303.57657 * 16 15 10 18 18 C 1.54985 * 110.61865 * 180.52506 * 16 15 10 19 19 C 1.54614 * 102.07582 * 204.10843 * 18 16 15 20 20 H 1.09001 * 112.72333 * 259.91813 * 19 18 16 21 21 C 1.54062 * 109.09349 * 134.97619 * 19 18 16 22 22 C 1.54904 * 104.08307 * 222.97888 * 21 19 18 23 23 C 1.54795 * 102.74030 * 38.67171 * 22 21 19 24 24 C 1.54314 * 104.51963 * 322.38913 * 23 22 21 25 25 H 1.09002 * 111.35804 * 260.07509 * 24 23 22 26 26 O 1.43828 * 108.56106 * 137.13420 * 24 23 22 27 27 H 0.96994 * 120.00046 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47244 * 56.90376 * 9 7 2 29 29 H 1.08995 * 109.47092 * 296.90409 * 9 7 2 30 30 H 1.08999 * 109.47751 * 191.67598 * 11 10 9 31 31 H 1.09000 * 109.47312 * 311.67731 * 11 10 9 32 32 H 1.09005 * 115.55107 * 29.82631 * 12 11 10 33 33 H 1.08996 * 117.49738 * 0.02562 * 13 12 11 34 34 H 1.09000 * 117.49953 * 145.01522 * 13 12 11 35 35 H 1.08996 * 117.50252 * 214.98275 * 14 12 11 36 36 H 1.09004 * 117.49474 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47429 * 70.00381 * 15 10 9 38 38 H 1.08996 * 109.47587 * 309.99819 * 15 10 9 39 39 H 1.09004 * 110.91292 * 322.30068 * 18 16 15 40 40 H 1.08999 * 110.91310 * 85.91634 * 18 16 15 41 41 H 1.08998 * 110.50393 * 104.32962 * 21 19 18 42 42 H 1.08997 * 110.51200 * 341.62645 * 21 19 18 43 43 H 1.09007 * 110.75416 * 280.35822 * 22 21 19 44 44 H 1.09000 * 110.91410 * 157.06404 * 22 21 19 45 45 H 1.09000 * 110.42855 * 203.62723 * 23 22 21 46 46 H 1.09005 * 110.42286 * 81.15013 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 4.0013 -2.5771 0.0732 11 6 5.3957 -2.6178 0.5336 12 6 5.4524 -2.2621 2.0205 13 6 6.1958 -0.9839 2.4134 14 6 6.8117 -2.3519 2.7171 15 6 3.8538 -3.2579 -1.2201 16 6 4.1359 -4.7515 -1.0453 17 1 5.1263 -4.9063 -0.6172 18 6 4.0004 -5.4946 -2.3986 19 6 3.6908 -6.9398 -1.9445 20 1 4.5671 -7.5874 -1.9746 21 6 2.5341 -7.4984 -2.7950 22 6 1.6291 -8.2256 -1.7694 23 6 1.6839 -7.2867 -0.5399 24 6 3.1396 -6.7758 -0.5076 25 1 3.7363 -7.3230 0.2222 26 8 3.1241 -5.3666 -0.2206 27 1 -0.4850 0.8400 0.0004 28 1 3.8753 -0.6331 0.8598 29 1 3.8745 -0.7289 -0.9175 30 1 5.7987 -3.6194 0.3839 31 1 5.9870 -1.8997 -0.0345 32 1 4.5703 -2.5302 2.6021 33 1 6.6441 -0.3961 1.6124 34 1 5.8030 -0.4112 3.2534 35 1 6.8239 -2.6786 3.7568 36 1 7.6657 -2.6639 2.1158 37 1 4.5599 -2.8362 -1.9354 38 1 2.8373 -3.1210 -1.5890 39 1 3.1776 -5.0867 -2.9857 40 1 4.9341 -5.4547 -2.9596 41 1 2.9112 -8.2016 -3.5375 42 1 1.9888 -6.6875 -3.2778 43 1 2.0346 -9.2073 -1.5242 44 1 0.6092 -8.3130 -2.1437 45 1 1.4543 -7.8392 0.3713 46 1 0.9913 -6.4544 -0.6657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159094.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:41 Heat of formation + Delta-G solvation = -22.892865 kcal Electronic energy + Delta-G solvation = -22877.713095 eV Core-core repulsion = 19767.623661 eV Total energy + Delta-G solvation = -3110.089435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03168 -37.86936 -35.89468 -34.79824 -32.44908 -31.76343 -28.86249 -27.97606 -27.44370 -25.46960 -23.41694 -22.06234 -21.28171 -20.85762 -20.15971 -19.78879 -19.23645 -16.83806 -16.71362 -15.81188 -15.49162 -14.92226 -14.68035 -14.41103 -14.12482 -13.64729 -13.57660 -13.34300 -12.95880 -12.31494 -12.24151 -12.15067 -11.95770 -11.60135 -11.43673 -11.25483 -11.20878 -10.88441 -10.82320 -10.80578 -10.71438 -10.64670 -10.54338 -10.44246 -10.01406 -9.95285 -9.70431 -9.44414 -9.21366 -9.03409 -8.48305 -7.27070 -5.95457 -3.91000 3.32571 3.40424 3.43148 4.00463 4.15429 4.49444 4.50092 4.56419 4.70128 4.92875 5.11580 5.16537 5.24187 5.27007 5.28749 5.34405 5.37396 5.50074 5.52777 5.54214 5.68365 5.71762 5.84640 5.86142 5.86621 5.90298 5.93473 5.99467 6.01200 6.08664 6.15492 6.19528 6.25317 6.25673 6.30402 6.39001 6.45010 6.63976 6.78022 6.93391 7.01752 7.44889 7.74347 8.00097 8.14246 8.77675 9.18572 9.67063 11.18071 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.005552 C = 0.004395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.521707 B = 5042.234972 C = 6369.063440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.083 0.917 9 C 0.161 3.839 10 N -0.514 5.514 11 C 0.081 3.919 12 C -0.129 4.129 13 C -0.185 4.185 14 C -0.187 4.187 15 C 0.069 3.931 16 C 0.084 3.916 17 H 0.061 0.939 18 C -0.146 4.146 19 C -0.123 4.123 20 H 0.083 0.917 21 C -0.116 4.116 22 C -0.124 4.124 23 C -0.126 4.126 24 C 0.070 3.930 25 H 0.069 0.931 26 O -0.340 6.340 27 H 0.261 0.739 28 H 0.034 0.966 29 H -0.020 1.020 30 H 0.066 0.934 31 H 0.021 0.979 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.031 0.969 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.013 -13.513 -3.025 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.697 3.303 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.101 0.899 9 C 0.035 3.965 10 N -0.237 5.237 11 C -0.047 4.047 12 C -0.147 4.147 13 C -0.222 4.222 14 C -0.224 4.224 15 C -0.060 4.060 16 C 0.026 3.974 17 H 0.078 0.922 18 C -0.184 4.184 19 C -0.142 4.142 20 H 0.102 0.898 21 C -0.154 4.154 22 C -0.161 4.161 23 C -0.164 4.164 24 C 0.011 3.989 25 H 0.087 0.913 26 O -0.259 6.259 27 H 0.071 0.929 28 H 0.052 0.948 29 H -0.002 1.002 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.049 0.951 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.415 -13.509 -2.528 17.244 hybrid contribution 1.091 1.343 -0.683 1.860 sum 11.506 -12.165 -3.211 17.050 Atomic orbital electron populations 1.69901 1.06058 1.26537 1.51748 1.24890 0.94674 0.98604 0.95229 0.86941 0.80545 0.84430 0.78344 1.20539 1.21278 1.19055 1.21095 0.88815 0.94707 1.49179 0.89920 1.20234 0.97121 0.84150 0.94964 1.61870 1.16224 1.19011 1.26639 1.21688 0.90922 0.99284 0.92819 1.22295 0.95271 1.00461 0.96684 1.22995 1.04843 0.90912 1.03411 1.22926 0.97170 1.01274 1.01050 1.22039 1.02844 0.90277 0.90816 1.23214 0.91687 0.93935 0.88540 0.92163 1.23294 1.02527 0.94301 0.98326 1.23037 0.98613 0.96908 0.95609 0.89816 1.22443 0.95834 0.99880 0.97231 1.22503 0.99836 0.98225 0.95565 1.22546 0.96517 0.99471 0.97846 1.23420 0.96386 0.84645 0.94403 0.91319 1.89140 1.56331 1.17080 1.63351 0.92868 0.94764 1.00219 0.91555 0.96058 0.86681 0.89435 0.89156 0.89220 0.89498 0.95056 0.88710 0.89947 0.90938 0.91901 0.90904 0.91765 0.91363 0.91523 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.90 27.53 -169.99 -4.68 17.22 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.44 6.45 56.52 0.36 -6.08 16 7 C -0.50 -14.51 9.14 -34.44 -0.31 -14.83 16 8 H 0.08 2.66 7.94 -52.48 -0.42 2.25 16 9 C 0.16 3.98 3.67 -4.98 -0.02 3.97 16 10 N -0.51 -10.96 4.37 -236.08 -1.03 -11.99 16 11 C 0.08 1.44 5.11 -3.83 -0.02 1.42 16 12 C -0.13 -2.20 4.96 -90.62 -0.45 -2.64 16 13 C -0.18 -2.86 9.97 -26.70 -0.27 -3.13 16 14 C -0.19 -2.54 10.25 -26.70 -0.27 -2.81 16 15 C 0.07 1.30 4.53 -3.82 -0.02 1.29 16 16 C 0.08 1.35 3.26 -25.68 -0.08 1.26 16 17 H 0.06 0.91 6.23 -51.93 -0.32 0.59 16 18 C -0.15 -1.88 6.12 -24.83 -0.15 -2.03 16 19 C -0.12 -1.42 3.88 -88.29 -0.34 -1.77 16 20 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.12 -1.23 6.37 -25.17 -0.16 -1.39 16 22 C -0.12 -1.28 6.90 -24.78 -0.17 -1.45 16 23 C -0.13 -1.64 6.53 -25.10 -0.16 -1.80 16 24 C 0.07 0.97 4.33 -25.12 -0.11 0.86 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 O -0.34 -6.20 10.71 -35.23 -0.38 -6.58 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.03 0.86 5.78 -51.93 -0.30 0.56 16 29 H -0.02 -0.49 7.59 -51.93 -0.39 -0.88 16 30 H 0.07 1.06 5.92 -51.93 -0.31 0.75 16 31 H 0.02 0.37 7.79 -51.93 -0.40 -0.03 16 32 H 0.12 2.20 8.14 -51.93 -0.42 1.77 16 33 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 38 H 0.09 2.07 7.34 -51.93 -0.38 1.69 16 39 H 0.08 1.11 7.15 -51.93 -0.37 0.74 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.83 7.22 -51.93 -0.37 0.46 16 43 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.28 8.00 -51.93 -0.42 0.87 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -31.50 352.72 -10.99 -42.49 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.35 Total: 2.17 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -2.64 Total: -21.18 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.26 Total: -39.44 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.38 Total: -6.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.68 Total: 17.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.50 -10.99 -42.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159094.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.596 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds