Wall clock time and date at job start Tue Mar 31 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00043 * 2 1 4 4 H 1.48504 * 109.47123 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47163 * 299.99307 * 3 2 1 6 6 H 1.48501 * 109.47230 * 59.99559 * 3 2 1 7 7 C 1.37883 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99681 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99986 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46987 * 184.77230 * 9 7 2 11 11 C 1.46902 * 110.99856 * 160.10308 * 10 9 7 12 12 C 1.53009 * 109.47213 * 287.81119 * 11 10 9 13 13 C 1.52999 * 117.49722 * 245.30661 * 12 11 10 14 14 C 1.53001 * 60.00083 * 252.50818 * 13 12 11 15 15 C 1.46893 * 111.00042 * 284.05518 * 10 9 7 16 16 C 1.53006 * 109.47000 * 170.00087 * 15 10 9 17 17 H 1.08995 * 109.82734 * 59.43642 * 16 15 10 18 18 C 1.54460 * 109.90729 * 180.37899 * 16 15 10 19 19 C 1.55465 * 102.35693 * 140.91112 * 18 16 15 20 20 C 1.54088 * 100.80212 * 326.79642 * 19 18 16 21 21 C 1.52882 * 115.02206 * 265.37434 * 20 19 18 22 22 C 1.53941 * 86.90813 * 268.05948 * 21 20 19 23 23 C 1.52863 * 115.04523 * 165.24751 * 20 19 18 24 24 O 1.42648 * 106.36109 * 35.27823 * 20 19 18 25 25 H 0.96995 * 120.00019 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47348 * 64.77217 * 9 7 2 27 27 H 1.09000 * 109.46986 * 304.77163 * 9 7 2 28 28 H 1.08997 * 109.47208 * 47.81010 * 11 10 9 29 29 H 1.09002 * 109.47302 * 167.81323 * 11 10 9 30 30 H 1.08994 * 115.54665 * 31.01064 * 12 11 10 31 31 H 1.09000 * 117.49754 * 359.97438 * 13 12 11 32 32 H 1.09001 * 117.49802 * 145.01992 * 13 12 11 33 33 H 1.08991 * 117.49834 * 252.51086 * 14 13 12 34 34 H 1.09003 * 117.49351 * 107.48437 * 14 13 12 35 35 H 1.09005 * 109.46784 * 50.00625 * 15 10 9 36 36 H 1.08996 * 109.47639 * 290.00241 * 15 10 9 37 37 H 1.08998 * 110.82072 * 259.12852 * 18 16 15 38 38 H 1.08994 * 110.82736 * 22.49576 * 18 16 15 39 39 H 1.08999 * 111.15120 * 208.91017 * 19 18 16 40 40 H 1.09003 * 111.15155 * 84.68314 * 19 18 16 41 41 H 1.08994 * 113.65361 * 22.58348 * 21 20 19 42 42 H 1.08997 * 113.65713 * 153.53419 * 21 20 19 43 43 H 1.09005 * 113.59272 * 89.88191 * 22 21 20 44 44 H 1.09006 * 113.58911 * 220.69694 * 22 21 20 45 45 H 1.09001 * 113.65853 * 206.35600 * 23 20 19 46 46 H 1.08998 * 113.65738 * 337.30233 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2014 -3.6133 0.1164 11 6 1.5293 -4.8318 0.5870 12 6 1.1739 -4.6789 2.0674 13 6 1.8727 -5.6087 3.0614 14 6 0.3941 -5.8175 2.7281 15 6 2.8911 -3.8516 -1.1585 16 6 4.0391 -4.8394 -0.9404 17 1 3.6487 -5.7798 -0.5514 18 6 4.7777 -5.0900 -2.2736 19 6 6.2642 -5.1552 -1.8232 20 6 6.2563 -4.1507 -0.6548 21 6 6.6720 -2.7265 -1.0236 22 6 8.1068 -3.1365 -0.6455 23 6 7.4787 -4.2135 0.2609 24 8 4.9879 -4.2868 -0.0165 25 1 -0.4850 0.8400 -0.0004 26 1 0.6904 -2.5951 -0.9293 27 1 0.5615 -2.5206 0.8444 28 1 0.6187 -4.9908 0.0094 29 1 2.1943 -5.6860 0.4595 30 1 0.9560 -3.6627 2.3960 31 1 2.5852 -6.3297 2.6606 32 1 2.1148 -5.2043 4.0442 33 1 -0.3365 -5.5504 3.4915 34 1 0.1343 -6.6755 2.1080 35 1 3.2890 -2.9103 -1.5378 36 1 2.1875 -4.2659 -1.8804 37 1 4.4654 -6.0352 -2.7178 38 1 4.6156 -4.2653 -2.9674 39 1 6.9314 -4.8264 -2.6200 40 1 6.5277 -6.1557 -1.4800 41 1 6.5477 -2.4947 -2.0813 42 1 6.2483 -1.9641 -0.3699 43 1 8.6774 -3.5463 -1.4789 44 1 8.6504 -2.3667 -0.0976 45 1 7.2829 -3.8687 1.2762 46 1 7.9987 -5.1710 0.2313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:27 Heat of formation + Delta-G solvation = -15.928259 kcal Electronic energy + Delta-G solvation = -23112.066486 eV Core-core repulsion = 20002.279059 eV Total energy + Delta-G solvation = -3109.787427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40561 -39.29515 -37.58832 -36.50716 -34.60181 -32.99114 -30.38756 -29.36314 -26.91811 -26.60756 -25.25961 -23.73411 -23.18068 -22.65352 -21.88214 -20.84812 -19.71097 -18.57202 -17.57346 -17.07153 -16.78876 -16.66338 -16.16988 -15.86558 -15.59126 -14.95598 -14.64932 -14.35710 -14.22122 -13.96795 -13.74289 -13.48357 -13.28555 -12.91087 -12.81205 -12.74566 -12.53497 -12.42554 -12.32581 -12.28946 -12.18098 -11.94227 -11.83757 -11.56859 -11.34865 -11.24481 -11.12584 -11.04854 -10.77538 -10.58701 -10.13121 -8.87489 -8.19872 -6.28789 1.35101 1.36408 1.50301 2.38185 2.84708 3.00653 3.11026 3.39342 3.57478 3.71926 3.73203 3.81980 3.94203 3.96788 4.07233 4.11943 4.17067 4.32299 4.41683 4.49902 4.58994 4.64992 4.73713 4.77524 4.77916 4.80443 4.83073 4.87927 4.90132 4.99127 5.00697 5.05263 5.07747 5.14902 5.16628 5.25427 5.29827 5.30626 5.40228 5.44682 5.53911 5.67326 6.10665 6.37302 6.51722 6.72997 6.87480 7.39941 8.90624 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.007115 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.929455 B = 3934.384387 C = 5680.342500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.210 3.790 10 N -0.531 5.531 11 C 0.091 3.909 12 C -0.166 4.166 13 C -0.161 4.161 14 C -0.166 4.166 15 C 0.058 3.942 16 C 0.089 3.911 17 H 0.080 0.920 18 C -0.146 4.146 19 C -0.116 4.116 20 C 0.064 3.936 21 C -0.163 4.163 22 C -0.123 4.123 23 C -0.125 4.125 24 O -0.367 6.367 25 H 0.264 0.736 26 H -0.044 1.044 27 H 0.009 0.991 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.361 -14.093 -2.688 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.084 3.916 10 N -0.254 5.254 11 C -0.037 4.037 12 C -0.185 4.185 13 C -0.198 4.198 14 C -0.204 4.204 15 C -0.070 4.070 16 C 0.031 3.969 17 H 0.098 0.902 18 C -0.184 4.184 19 C -0.153 4.153 20 C 0.025 3.975 21 C -0.200 4.200 22 C -0.160 4.160 23 C -0.163 4.163 24 O -0.286 6.286 25 H 0.072 0.928 26 H -0.026 1.026 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.518 -13.789 -2.130 19.427 hybrid contribution -1.056 1.313 -0.616 1.794 sum 12.462 -12.476 -2.746 17.847 Atomic orbital electron populations 1.70087 1.07529 1.27638 1.52391 1.25851 0.95719 1.02886 0.95129 0.85426 0.78859 0.79023 0.77900 1.19258 1.20031 1.20300 1.21436 0.93193 0.91258 1.49006 0.92904 1.19384 0.90194 0.89134 0.92924 1.61922 1.30082 1.04913 1.28526 1.21640 0.95891 0.93012 0.93162 1.22128 1.06652 0.95407 0.94290 1.22959 0.95201 1.01992 0.99646 1.23028 0.94636 0.99558 1.03149 1.22360 0.95392 0.99067 0.90202 1.22845 0.89187 0.94719 0.90126 0.90227 1.23179 0.95240 1.03817 0.96149 1.22888 0.96259 0.99373 0.96777 1.23449 0.84518 0.95252 0.94311 1.23337 0.98031 0.97426 1.01253 1.22749 0.94733 0.98460 1.00038 1.23033 0.94293 1.00616 0.98319 1.88497 1.19402 1.83902 1.36788 0.92764 1.02607 0.97328 0.96584 0.89711 0.91106 0.87934 0.88975 0.88394 0.87448 0.92895 0.95139 0.87723 0.91033 0.88059 0.88553 0.91204 0.92707 0.87609 0.90708 0.91196 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 46.71 29.54 68.60 2.03 48.74 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 7 C -0.51 -30.85 8.62 25.60 0.22 -30.63 16 8 H 0.05 3.25 7.67 -2.91 -0.02 3.22 16 9 C 0.21 11.89 4.55 85.56 0.39 12.28 16 10 N -0.53 -24.70 4.28 -900.78 -3.86 -28.56 16 11 C 0.09 3.52 5.11 86.31 0.44 3.96 16 12 C -0.17 -6.25 5.58 -10.79 -0.06 -6.31 16 13 C -0.16 -4.78 10.18 30.59 0.31 -4.46 16 14 C -0.17 -4.70 10.25 30.60 0.31 -4.39 16 15 C 0.06 2.36 4.34 86.31 0.37 2.73 16 16 C 0.09 2.82 3.44 31.09 0.11 2.93 16 17 H 0.08 2.34 6.28 -2.39 -0.02 2.32 16 18 C -0.15 -3.35 6.56 31.94 0.21 -3.14 16 19 C -0.12 -2.27 6.21 31.81 0.20 -2.07 16 20 C 0.06 1.75 1.44 -10.51 -0.02 1.73 16 21 C -0.16 -4.61 7.57 30.87 0.23 -4.38 16 22 C -0.12 -2.49 7.92 31.29 0.25 -2.24 16 23 C -0.13 -2.86 7.64 30.93 0.24 -2.62 16 24 O -0.37 -13.26 10.72 -148.98 -1.60 -14.85 16 25 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 26 H -0.04 -2.65 8.00 -2.39 -0.02 -2.67 16 27 H 0.01 0.53 6.46 -2.39 -0.02 0.51 16 28 H 0.02 0.64 8.05 -2.39 -0.02 0.62 16 29 H 0.08 2.82 5.67 -2.39 -0.01 2.80 16 30 H 0.07 3.26 6.88 -2.39 -0.02 3.24 16 31 H 0.10 2.74 8.04 -2.39 -0.02 2.72 16 32 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 2.44 7.34 -2.38 -0.02 2.42 16 36 H 0.03 1.18 8.12 -2.39 -0.02 1.16 16 37 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 1.75 7.85 -2.39 -0.02 1.73 16 39 H 0.10 1.57 8.04 -2.39 -0.02 1.55 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 42 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 Total: -1.00 -71.24 360.24 1.45 -69.79 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.92 Total: 19.13 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.67 Total: -36.06 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.57 Total: -86.75 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -1.60 Total: -14.85 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -71.24 1.45 -69.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.863 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds