Wall clock time and date at job start Tue Mar 31 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.50354 * 60.20317 * 9 7 2 11 11 C 1.53114 * 109.50702 * 300.08283 * 9 7 2 12 12 C 1.53121 * 109.16246 * 182.40412 * 11 9 7 13 13 C 1.53037 * 109.27877 * 57.65502 * 12 11 9 14 14 N 1.46852 * 109.52281 * 300.82071 * 13 12 11 15 15 C 1.46895 * 110.99864 * 185.83784 * 14 13 12 16 16 C 1.52998 * 109.47037 * 65.79371 * 15 14 13 17 17 H 1.08997 * 110.31904 * 305.69864 * 16 15 14 18 18 C 1.54752 * 110.36039 * 183.48123 * 16 15 14 19 19 C 1.53468 * 103.62941 * 217.35939 * 18 16 15 20 20 C 1.52641 * 115.84600 * 230.96823 * 19 18 16 21 21 C 1.53989 * 86.73423 * 217.20909 * 20 19 18 22 22 C 1.52665 * 115.81743 * 129.60908 * 19 18 16 23 23 C 1.53433 * 105.21043 * 0.31125 * 19 18 16 24 24 O 1.44517 * 110.36096 * 67.91508 * 16 15 14 25 25 C 1.46850 * 111.19440 * 61.74245 * 14 13 12 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.52511 * 302.30888 * 11 9 7 28 28 H 1.09000 * 109.52177 * 62.49952 * 11 9 7 29 29 H 1.09003 * 109.50089 * 297.71512 * 12 11 9 30 30 H 1.09002 * 109.53433 * 177.61706 * 12 11 9 31 31 H 1.09001 * 109.45934 * 180.80579 * 13 12 11 32 32 H 1.08993 * 109.46277 * 60.83445 * 13 12 11 33 33 H 1.09000 * 109.46943 * 185.79259 * 15 14 13 34 34 H 1.08996 * 109.47498 * 305.78895 * 15 14 13 35 35 H 1.09000 * 110.58853 * 335.89497 * 18 16 15 36 36 H 1.09003 * 110.59205 * 98.82553 * 18 16 15 37 37 H 1.09001 * 113.67062 * 331.66336 * 20 19 18 38 38 H 1.08997 * 113.67389 * 102.74703 * 20 19 18 39 39 H 1.09000 * 113.58022 * 269.97796 * 21 20 19 40 40 H 1.08998 * 113.65395 * 139.19506 * 21 20 19 41 41 H 1.08996 * 113.67109 * 257.27232 * 22 19 18 42 42 H 1.09000 * 113.67294 * 28.36360 * 22 19 18 43 43 H 1.09005 * 110.42116 * 141.95232 * 23 19 18 44 44 H 1.08992 * 110.42560 * 264.30936 * 23 19 18 45 45 H 1.09002 * 109.45807 * 178.23985 * 25 14 13 46 46 H 1.08997 * 109.46381 * 58.27240 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6232 -2.5608 -0.8835 11 6 0.3744 -2.5776 1.2582 12 6 -0.3412 -3.9310 1.2869 13 6 0.6989 -5.0532 1.2548 14 7 1.5115 -4.9346 0.0374 15 6 2.4286 -6.0743 -0.0964 16 6 1.6214 -7.3556 -0.3144 17 1 0.8853 -7.4790 0.4800 18 6 2.5632 -8.5822 -0.3710 19 6 1.9278 -9.4768 -1.4440 20 6 1.6958 -10.9318 -1.0453 21 6 2.0819 -11.2973 -2.4906 22 6 2.8697 -9.9750 -2.5373 23 6 0.6898 -8.7095 -1.9264 24 8 0.9693 -7.3259 -1.6038 25 6 2.2451 -3.6628 0.0105 26 1 -0.4850 0.8400 0.0004 27 1 0.9982 -2.4765 2.1463 28 1 -0.3636 -1.7758 1.2371 29 1 -0.9946 -4.0156 0.4185 30 1 -0.9344 -4.0105 2.1979 31 1 0.1921 -6.0183 1.2607 32 1 1.3433 -4.9762 2.1305 33 1 3.0887 -5.9113 -0.9484 34 1 3.0241 -6.1700 0.8114 35 1 3.5676 -8.2809 -0.6686 36 1 2.5845 -9.0939 0.5912 37 1 2.3999 -11.2985 -0.2984 38 1 0.6585 -11.1580 -0.7989 39 1 1.2339 -11.3240 -3.1749 40 1 2.7124 -12.1834 -2.5640 41 1 2.7682 -9.4382 -3.4804 42 1 3.9057 -10.0712 -2.2121 43 1 0.5620 -8.8315 -3.0020 44 1 -0.1996 -9.0513 -1.3973 45 1 2.8614 -3.6180 -0.8874 46 1 2.8822 -3.5923 0.8921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878886133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:16 Heat of formation + Delta-G solvation = -33.379477 kcal Electronic energy + Delta-G solvation = -22660.481368 eV Core-core repulsion = 19549.937200 eV Total energy + Delta-G solvation = -3110.544168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64484 -38.25075 -36.80068 -33.79759 -31.99531 -30.64894 -29.80037 -28.32371 -26.03870 -25.35942 -24.90958 -23.07985 -21.81631 -21.64914 -20.33244 -18.75682 -18.48340 -16.53409 -16.08184 -15.85945 -15.40857 -15.14302 -14.74367 -14.52292 -14.09914 -13.61426 -13.39288 -13.21904 -13.00707 -12.82504 -12.43720 -12.30025 -12.02012 -11.79261 -11.66703 -11.30077 -11.19316 -11.06593 -10.92328 -10.67943 -10.62382 -10.47329 -10.37822 -10.29903 -10.02673 -9.77408 -9.52957 -9.37457 -8.92336 -8.62403 -8.24274 -7.53129 -5.91610 -3.97539 3.33446 3.41296 3.45083 3.90599 4.20568 4.25167 4.43522 4.50680 4.56459 4.61674 4.89882 5.06352 5.16119 5.19017 5.38295 5.42788 5.44586 5.52987 5.56048 5.60229 5.64754 5.70441 5.76485 5.79495 5.83511 5.87970 5.94992 6.07338 6.14209 6.14904 6.20684 6.35535 6.47378 6.59370 6.79149 6.82647 6.99541 7.07318 7.30223 7.48099 7.75883 7.81913 7.92091 8.16990 8.24975 8.55108 9.06931 9.66357 11.14422 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.003392 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.447456 B = 8252.461167 C = 8517.999126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.061 3.939 14 N -0.530 5.530 15 C 0.061 3.939 16 C 0.082 3.918 17 H 0.067 0.933 18 C -0.138 4.138 19 C -0.116 4.116 20 C -0.127 4.127 21 C -0.142 4.142 22 C -0.125 4.125 23 C 0.065 3.935 24 O -0.346 6.346 25 C 0.069 3.931 26 H 0.258 0.742 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 -21.508 -0.754 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.067 4.067 14 N -0.255 5.255 15 C -0.067 4.067 16 C 0.024 3.976 17 H 0.085 0.915 18 C -0.176 4.176 19 C -0.116 4.116 20 C -0.164 4.164 21 C -0.180 4.180 22 C -0.162 4.162 23 C -0.013 4.013 24 O -0.265 6.265 25 C -0.058 4.058 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.615 -21.177 -1.285 21.376 hybrid contribution 1.082 0.696 0.908 1.574 sum 3.697 -20.481 -0.377 20.816 Atomic orbital electron populations 1.69907 1.05818 1.26117 1.50872 1.24937 0.94821 0.98914 0.95236 0.86581 0.80124 0.84042 0.77489 1.19889 1.21066 1.21155 1.21200 0.92835 0.90726 1.50394 0.92847 1.18663 0.92656 0.90223 0.94876 0.94671 1.21644 1.00010 0.94736 0.98413 1.21662 0.97211 0.96454 1.00116 1.22079 0.95803 0.98742 0.90046 1.61939 1.24005 1.01953 1.37561 1.22112 0.94114 0.90164 1.00360 1.23098 0.93425 0.94227 0.86898 0.91542 1.22869 1.00148 0.95846 0.98725 1.22490 0.97302 0.94960 0.96845 1.22827 1.01823 0.94701 0.97090 1.22907 1.00325 0.97689 0.97062 1.22825 0.98197 0.96501 0.98710 1.23060 0.94844 0.82592 1.00782 1.89398 1.78993 1.22786 1.35305 1.22305 0.96381 0.88536 0.98571 0.93169 0.95282 0.89148 0.92022 0.93697 0.92491 0.96175 0.90404 0.94433 0.90391 0.90637 0.89924 0.91252 0.90166 0.91518 0.90993 0.89972 0.89355 0.92366 0.92318 0.96521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 11.35 55.43 0.63 -25.24 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.40 8.57 -34.44 -0.30 -14.70 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.69 5.02 -26.61 -0.13 -2.82 16 12 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 13 C 0.06 1.13 5.30 -3.83 -0.02 1.11 16 14 N -0.53 -10.41 4.65 -234.67 -1.09 -11.50 16 15 C 0.06 0.97 4.57 -3.83 -0.02 0.95 16 16 C 0.08 1.14 3.25 -25.81 -0.08 1.05 16 17 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 18 C -0.14 -1.47 6.15 -25.57 -0.16 -1.62 16 19 C -0.12 -1.12 1.17 -154.41 -0.18 -1.30 16 20 C -0.13 -0.99 7.29 -26.40 -0.19 -1.18 16 21 C -0.14 -1.04 7.95 -25.71 -0.20 -1.24 16 22 C -0.13 -1.08 7.22 -26.38 -0.19 -1.27 16 23 C 0.06 0.75 6.90 37.38 0.26 1.00 16 24 O -0.35 -5.50 11.35 -35.23 -0.40 -5.90 16 25 C 0.07 1.53 4.68 -3.83 -0.02 1.51 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.46 6.15 -51.93 -0.32 2.14 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.94 6.13 -51.93 -0.32 0.62 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 34 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 36 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.93 7.92 -51.93 -0.41 0.52 16 44 H 0.06 0.62 8.04 -51.93 -0.42 0.21 16 45 H 0.06 1.30 8.02 -51.93 -0.42 0.88 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -29.82 347.81 -10.80 -40.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.46 Total: -1.63 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -1.70 Total: -18.19 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.46 Total: -36.73 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.40 Total: -5.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.82 -10.80 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878886133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.250 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds