Wall clock time and date at job start Tue Mar 31 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09007 * 109.50354 * 60.20317 * 9 7 2 11 11 C 1.53114 * 109.50702 * 300.08283 * 9 7 2 12 12 C 1.53121 * 109.16246 * 182.40412 * 11 9 7 13 13 C 1.53037 * 109.27877 * 57.65502 * 12 11 9 14 14 N 1.46852 * 109.52281 * 300.82071 * 13 12 11 15 15 C 1.46895 * 110.99864 * 185.83784 * 14 13 12 16 16 C 1.52998 * 109.47037 * 65.79371 * 15 14 13 17 17 H 1.08997 * 110.31904 * 305.69864 * 16 15 14 18 18 C 1.54752 * 110.36039 * 183.48123 * 16 15 14 19 19 C 1.53468 * 103.62941 * 217.35939 * 18 16 15 20 20 C 1.52641 * 115.84600 * 230.96823 * 19 18 16 21 21 C 1.53989 * 86.73423 * 217.20909 * 20 19 18 22 22 C 1.52665 * 115.81743 * 129.60908 * 19 18 16 23 23 C 1.53433 * 105.21043 * 0.31125 * 19 18 16 24 24 O 1.44517 * 110.36096 * 67.91508 * 16 15 14 25 25 C 1.46850 * 111.19440 * 61.74245 * 14 13 12 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.52511 * 302.30888 * 11 9 7 28 28 H 1.09000 * 109.52177 * 62.49952 * 11 9 7 29 29 H 1.09003 * 109.50089 * 297.71512 * 12 11 9 30 30 H 1.09002 * 109.53433 * 177.61706 * 12 11 9 31 31 H 1.09001 * 109.45934 * 180.80579 * 13 12 11 32 32 H 1.08993 * 109.46277 * 60.83445 * 13 12 11 33 33 H 1.09000 * 109.46943 * 185.79259 * 15 14 13 34 34 H 1.08996 * 109.47498 * 305.78895 * 15 14 13 35 35 H 1.09000 * 110.58853 * 335.89497 * 18 16 15 36 36 H 1.09003 * 110.59205 * 98.82553 * 18 16 15 37 37 H 1.09001 * 113.67062 * 331.66336 * 20 19 18 38 38 H 1.08997 * 113.67389 * 102.74703 * 20 19 18 39 39 H 1.09000 * 113.58022 * 269.97796 * 21 20 19 40 40 H 1.08998 * 113.65395 * 139.19506 * 21 20 19 41 41 H 1.08996 * 113.67109 * 257.27232 * 22 19 18 42 42 H 1.09000 * 113.67294 * 28.36360 * 22 19 18 43 43 H 1.09005 * 110.42116 * 141.95232 * 23 19 18 44 44 H 1.08992 * 110.42560 * 264.30936 * 23 19 18 45 45 H 1.09002 * 109.45807 * 178.23985 * 25 14 13 46 46 H 1.08997 * 109.46381 * 58.27240 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6232 -2.5608 -0.8835 11 6 0.3744 -2.5776 1.2582 12 6 -0.3412 -3.9310 1.2869 13 6 0.6989 -5.0532 1.2548 14 7 1.5115 -4.9346 0.0374 15 6 2.4286 -6.0743 -0.0964 16 6 1.6214 -7.3556 -0.3144 17 1 0.8853 -7.4790 0.4800 18 6 2.5632 -8.5822 -0.3710 19 6 1.9278 -9.4768 -1.4440 20 6 1.6958 -10.9318 -1.0453 21 6 2.0819 -11.2973 -2.4906 22 6 2.8697 -9.9750 -2.5373 23 6 0.6898 -8.7095 -1.9264 24 8 0.9693 -7.3259 -1.6038 25 6 2.2451 -3.6628 0.0105 26 1 -0.4850 0.8400 0.0004 27 1 0.9982 -2.4765 2.1463 28 1 -0.3636 -1.7758 1.2371 29 1 -0.9946 -4.0156 0.4185 30 1 -0.9344 -4.0105 2.1979 31 1 0.1921 -6.0183 1.2607 32 1 1.3433 -4.9762 2.1305 33 1 3.0887 -5.9113 -0.9484 34 1 3.0241 -6.1700 0.8114 35 1 3.5676 -8.2809 -0.6686 36 1 2.5845 -9.0939 0.5912 37 1 2.3999 -11.2985 -0.2984 38 1 0.6585 -11.1580 -0.7989 39 1 1.2339 -11.3240 -3.1749 40 1 2.7124 -12.1834 -2.5640 41 1 2.7682 -9.4382 -3.4804 42 1 3.9057 -10.0712 -2.2121 43 1 0.5620 -8.8315 -3.0020 44 1 -0.1996 -9.0513 -1.3973 45 1 2.8614 -3.6180 -0.8874 46 1 2.8822 -3.5923 0.8921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878886133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:16 Heat of formation + Delta-G solvation = -50.825162 kcal Electronic energy + Delta-G solvation = -22661.237870 eV Core-core repulsion = 19549.937200 eV Total energy + Delta-G solvation = -3111.300670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48913 -39.78553 -37.82776 -35.62364 -33.73586 -31.91642 -31.54253 -29.36767 -26.94866 -26.64831 -26.56191 -24.21121 -23.40729 -22.92668 -21.59473 -20.36605 -19.47569 -18.45686 -17.29629 -16.89634 -16.58672 -16.42159 -16.03167 -15.82347 -15.54575 -14.94959 -14.78288 -14.62381 -14.31508 -14.09755 -14.00408 -13.51493 -13.35013 -13.02944 -12.86699 -12.78038 -12.59264 -12.52515 -12.38047 -12.17116 -11.88481 -11.79307 -11.72078 -11.41716 -11.32811 -11.10645 -11.01854 -10.77392 -10.66336 -10.53890 -10.35430 -9.06673 -8.07697 -6.22382 1.40219 1.41392 1.53315 2.42731 2.91837 3.14530 3.18886 3.46559 3.59202 3.75276 3.96348 3.99008 4.04124 4.15071 4.19448 4.32753 4.43305 4.44432 4.52716 4.61305 4.64203 4.70316 4.72873 4.81589 4.86316 4.88162 4.88336 4.91493 4.97882 4.98898 5.09685 5.10907 5.12776 5.18077 5.21018 5.39415 5.41005 5.51978 5.54262 5.63428 5.96625 6.02332 6.13336 6.21582 6.40724 6.46787 6.90544 7.45472 8.97324 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037452 B = 0.003392 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.447456 B = 8252.461167 C = 8517.999126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.053 3.947 10 H -0.009 1.009 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.066 3.934 14 N -0.547 5.547 15 C 0.061 3.939 16 C 0.082 3.918 17 H 0.069 0.931 18 C -0.130 4.130 19 C -0.118 4.118 20 C -0.120 4.120 21 C -0.137 4.137 22 C -0.129 4.129 23 C 0.059 3.941 24 O -0.386 6.386 25 C 0.083 3.917 26 H 0.260 0.740 27 H 0.025 0.975 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -23.505 0.145 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.009 0.991 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.272 5.272 15 C -0.066 4.066 16 C 0.024 3.976 17 H 0.086 0.914 18 C -0.168 4.168 19 C -0.118 4.118 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.166 4.166 23 C -0.018 4.018 24 O -0.306 6.306 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.600 -23.200 -0.386 23.481 hybrid contribution 0.738 1.314 0.576 1.613 sum 4.338 -21.887 0.190 22.313 Atomic orbital electron populations 1.70055 1.07244 1.27014 1.51265 1.25758 0.95694 1.02453 0.94756 0.85524 0.79051 0.79557 0.77615 1.19094 1.20676 1.20446 1.21554 0.92987 0.92159 1.50752 0.93011 1.18577 0.92991 0.91383 0.93646 0.99063 1.21446 0.99085 0.96196 0.97342 1.21578 0.97566 0.94998 1.00685 1.22061 0.95265 0.98946 0.89858 1.61856 1.24907 1.01877 1.38548 1.22195 0.93952 0.89639 1.00843 1.23117 0.93850 0.94259 0.86365 0.91363 1.22848 0.99320 0.94554 1.00109 1.22492 0.96558 0.95738 0.97021 1.22831 1.02496 0.92768 0.97601 1.22891 1.00283 0.97349 0.96870 1.22874 0.98620 0.97212 0.97881 1.23234 0.96149 0.81120 1.01269 1.89354 1.79495 1.25504 1.36222 1.21960 0.95280 0.88942 0.98244 0.93065 0.95613 0.92406 0.93681 0.91048 0.89748 0.95202 0.91209 0.92617 0.90316 0.88650 0.88744 0.90786 0.89981 0.90308 0.92069 0.89254 0.89048 0.91630 0.93047 0.96369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 11.35 21.45 0.24 -54.68 16 2 C 0.01 0.68 5.30 84.65 0.45 1.13 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.54 -30.90 8.57 25.60 0.22 -30.68 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.05 2.84 2.26 -11.49 -0.03 2.82 16 10 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 11 C -0.10 -5.14 5.02 30.67 0.15 -4.98 16 12 C -0.11 -4.50 6.09 30.65 0.19 -4.31 16 13 C 0.07 2.34 5.30 86.32 0.46 2.80 16 14 N -0.55 -21.28 4.65 -896.37 -4.17 -25.45 16 15 C 0.06 1.88 4.57 86.30 0.39 2.28 16 16 C 0.08 2.14 3.25 31.19 0.10 2.24 16 17 H 0.07 1.74 6.25 -2.39 -0.01 1.72 16 18 C -0.13 -2.44 6.15 31.35 0.19 -2.25 16 19 C -0.12 -2.02 1.17 -52.12 -0.06 -2.08 16 20 C -0.12 -1.49 7.29 30.81 0.22 -1.26 16 21 C -0.14 -1.63 7.95 31.25 0.25 -1.38 16 22 C -0.13 -1.96 7.22 30.82 0.22 -1.74 16 23 C 0.06 1.29 6.90 72.13 0.50 1.79 16 24 O -0.39 -12.06 11.35 -148.98 -1.69 -13.75 16 25 C 0.08 3.76 4.68 86.33 0.40 4.16 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 3.26 6.15 -2.39 -0.01 3.25 16 29 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.08 2.55 6.13 -2.39 -0.01 2.54 16 32 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 2.23 7.99 -2.39 -0.02 2.21 16 34 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 35 H 0.08 1.47 7.71 -2.39 -0.02 1.45 16 36 H 0.09 1.41 7.97 -2.39 -0.02 1.40 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.87 8.05 -2.39 -0.02 0.85 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.87 7.92 -2.38 -0.02 1.85 16 44 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 45 H 0.05 2.34 8.02 -2.39 -0.02 2.32 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.03 347.81 0.99 -65.04 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.92 Total: 13.42 kcal Atomic # 6 Polarization: -35.14 SS G_CDS: 3.67 Total: -31.47 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.93 Total: -80.13 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.69 Total: -13.75 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -66.03 0.99 -65.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878886133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.218 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds