Wall clock time and date at job start Tue Mar 31 2020 01:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47135 * 264.77943 * 3 2 1 5 5 H 1.48495 * 109.47670 * 24.78385 * 3 2 1 6 6 H 1.48503 * 109.47159 * 144.78410 * 3 2 1 7 7 C 1.37873 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00280 * 5.51712 * 7 2 1 9 9 C 1.50702 * 119.99866 * 185.51193 * 7 2 1 10 10 H 1.08999 * 109.50512 * 335.12957 * 9 7 2 11 11 C 1.53123 * 109.49864 * 95.20401 * 9 7 2 12 12 C 1.53124 * 109.15735 * 177.63572 * 11 9 7 13 13 C 1.53038 * 109.27926 * 302.34582 * 12 11 9 14 14 N 1.46848 * 109.52490 * 59.17929 * 13 12 11 15 15 C 1.46898 * 111.00357 * 174.16207 * 14 13 12 16 16 C 1.53004 * 109.46866 * 66.04416 * 15 14 13 17 17 H 1.08996 * 110.31922 * 57.79032 * 16 15 14 18 18 C 1.54760 * 110.35649 * 180.02562 * 16 15 14 19 19 C 1.53462 * 103.62454 * 142.64364 * 18 16 15 20 20 C 1.52660 * 115.82695 * 230.37283 * 19 18 16 21 21 C 1.53988 * 86.73268 * 217.19026 * 20 19 18 22 22 C 1.52650 * 115.83888 * 129.02093 * 19 18 16 23 23 C 1.53436 * 105.21402 * 359.68342 * 19 18 16 24 24 O 1.44521 * 110.36116 * 295.44554 * 16 15 14 25 25 C 1.46846 * 111.19663 * 298.26092 * 14 13 12 26 26 H 0.97004 * 119.99686 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.52527 * 57.73565 * 11 9 7 28 28 H 1.08999 * 109.57665 * 297.56750 * 11 9 7 29 29 H 1.09002 * 109.49859 * 182.40539 * 12 11 9 30 30 H 1.09001 * 109.53682 * 62.30629 * 12 11 9 31 31 H 1.09002 * 109.46130 * 299.16640 * 13 12 11 32 32 H 1.08993 * 109.45534 * 179.18975 * 13 12 11 33 33 H 1.08999 * 109.46981 * 306.04725 * 15 14 13 34 34 H 1.08996 * 109.47033 * 186.04989 * 15 14 13 35 35 H 1.08998 * 110.59107 * 24.11297 * 18 16 15 36 36 H 1.08998 * 110.59170 * 261.18111 * 18 16 15 37 37 H 1.09005 * 113.66770 * 331.64800 * 20 19 18 38 38 H 1.08994 * 113.67131 * 102.72531 * 20 19 18 39 39 H 1.08998 * 113.57883 * 269.97674 * 21 20 19 40 40 H 1.08996 * 113.64998 * 139.19093 * 21 20 19 41 41 H 1.09006 * 113.66992 * 257.25955 * 22 19 18 42 42 H 1.09003 * 113.67177 * 28.33479 * 22 19 18 43 43 H 1.08996 * 110.42480 * 95.56887 * 23 19 18 44 44 H 1.08995 * 110.41954 * 218.04692 * 23 19 18 45 45 H 1.09004 * 109.46036 * 181.75736 * 25 14 13 46 46 H 1.08997 * 109.46476 * 301.72208 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9827 -1.3943 5 1 1.3959 2.6820 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1272 -0.0890 9 6 3.5063 -1.1970 0.1259 10 1 3.9031 -0.2461 -0.2296 11 6 3.8963 -1.3972 1.5930 12 6 5.4223 -1.4582 1.7035 13 6 5.9480 -2.5919 0.8202 14 7 5.5493 -2.3538 -0.5730 15 6 6.1528 -3.3478 -1.4706 16 6 5.5786 -4.7314 -1.1590 17 1 4.4937 -4.7232 -1.2633 18 6 6.2018 -5.7959 -2.0937 19 6 6.3581 -7.0250 -1.1883 20 6 7.7360 -7.6821 -1.1909 21 6 6.9967 -9.0290 -1.0881 22 6 5.7858 -8.3306 -1.7343 23 6 5.8297 -6.5846 0.1833 24 8 5.9549 -5.1434 0.1742 25 6 4.0875 -2.3384 -0.7117 26 1 -0.4850 0.8401 0.0004 27 1 3.4671 -2.3295 1.9602 28 1 3.5211 -0.5643 2.1876 29 1 5.7050 -1.6433 2.7398 30 1 5.8498 -0.5114 1.3732 31 1 5.5315 -3.5401 1.1601 32 1 7.0354 -2.6287 0.8855 33 1 7.2328 -3.3613 -1.3241 34 1 5.9297 -3.0863 -2.5049 35 1 7.1731 -5.4633 -2.4596 36 1 5.5322 -6.0149 -2.9254 37 1 8.2809 -7.5523 -2.1260 38 1 8.3360 -7.4440 -0.3127 39 1 6.8180 -9.3511 -0.0622 40 1 7.4295 -9.8138 -1.7084 41 1 4.8307 -8.6098 -1.2892 42 1 5.7793 -8.3842 -2.8230 43 1 4.7858 -6.8754 0.3000 44 1 6.4365 -7.0140 0.9804 45 1 3.8236 -2.1912 -1.7590 46 1 3.6797 -3.2877 -0.3646 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878886136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:24 Heat of formation + Delta-G solvation = -50.724230 kcal Electronic energy + Delta-G solvation = -23187.084313 eV Core-core repulsion = 20075.788019 eV Total energy + Delta-G solvation = -3111.296293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64536 -39.90077 -37.80118 -35.46615 -34.09745 -32.10104 -31.65678 -29.28033 -26.97465 -26.73961 -26.68260 -24.39730 -23.09295 -22.80424 -22.02716 -20.27358 -19.51440 -18.96065 -17.42396 -16.93540 -16.67105 -16.37052 -15.98584 -15.69395 -15.63745 -15.19971 -14.81814 -14.64894 -14.35438 -14.24633 -13.89382 -13.68260 -13.35450 -13.04860 -12.96783 -12.83637 -12.73963 -12.46812 -12.43960 -12.14667 -11.93956 -11.81253 -11.68489 -11.41878 -11.27768 -11.10146 -11.05196 -11.02525 -10.79883 -10.63309 -10.57138 -9.03699 -8.28867 -6.32002 1.36629 1.37232 1.50033 2.36837 2.80717 3.06269 3.27250 3.44302 3.54226 3.70740 3.93179 3.99372 4.00345 4.13389 4.23392 4.26430 4.28434 4.41168 4.47913 4.57290 4.61607 4.71939 4.76466 4.77756 4.82250 4.86837 4.89447 4.92199 4.96006 4.99988 5.07693 5.09193 5.12598 5.13760 5.18891 5.29186 5.30927 5.37883 5.50958 5.59810 5.66079 5.76168 5.89901 6.20261 6.34296 6.40881 6.75748 7.34314 8.88253 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.031013 B = 0.004146 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.633160 B = 6751.489140 C = 7035.595139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.944 3.056 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.027 0.973 9 C 0.019 3.981 10 H 0.034 0.966 11 C -0.108 4.108 12 C -0.115 4.115 13 C 0.064 3.936 14 N -0.544 5.544 15 C 0.064 3.936 16 C 0.037 3.963 17 H 0.045 0.955 18 C -0.126 4.126 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.136 4.136 22 C -0.128 4.128 23 C 0.058 3.942 24 O -0.378 6.378 25 C 0.085 3.915 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.057 0.943 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.753 -15.384 -3.221 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.172 1.172 7 C -0.553 4.553 8 H 0.045 0.955 9 C -0.001 4.001 10 H 0.052 0.948 11 C -0.146 4.146 12 C -0.153 4.153 13 C -0.063 4.063 14 N -0.267 5.267 15 C -0.064 4.064 16 C -0.022 4.022 17 H 0.063 0.937 18 C -0.164 4.164 19 C -0.117 4.117 20 C -0.157 4.157 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.019 4.019 24 O -0.298 6.298 25 C -0.043 4.043 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.110 0.890 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.076 0.924 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 18.846 -14.658 -3.174 24.086 hybrid contribution -1.153 -0.120 0.169 1.172 sum 17.693 -14.778 -3.005 23.248 Atomic orbital electron populations 1.70066 1.08224 1.28027 1.52803 1.25904 0.95403 1.02920 0.94048 0.85778 0.79259 0.78607 0.79530 1.19124 1.21460 1.17175 1.21239 0.91776 0.92850 1.49454 0.95472 1.19112 0.92842 0.95357 0.92761 0.94779 1.21706 0.95215 0.99423 0.98262 1.21668 0.95027 0.99123 0.99471 1.22137 0.99848 0.97035 0.87275 1.62149 1.08973 1.48075 1.07512 1.22446 0.99983 0.86365 0.97646 1.23847 0.98183 0.97000 0.83153 0.93655 1.22795 1.02287 0.93500 0.97820 1.22476 0.99185 0.94845 0.95219 1.22820 0.94423 0.95594 1.02821 1.22885 0.96313 0.96717 1.01410 1.22873 0.98329 0.94187 1.01163 1.23199 0.99951 0.81564 0.97155 1.89269 1.88900 1.20824 1.30768 1.21889 0.86168 0.96934 0.99263 0.92569 0.94555 0.94455 0.90686 0.92256 0.93266 0.90366 0.88989 0.88794 0.89134 0.89994 0.88961 0.91342 0.90040 0.90245 0.91753 0.88991 0.93240 0.88266 0.92447 0.96960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 2 C 0.01 0.84 5.47 84.65 0.46 1.30 16 3 Si 0.94 45.87 27.01 68.60 1.85 47.72 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.25 -11.37 6.80 99.48 0.68 -10.70 16 7 C -0.51 -30.26 8.86 25.60 0.23 -30.04 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.02 0.90 1.94 -11.49 -0.02 0.88 16 10 H 0.03 1.68 5.27 -2.39 -0.01 1.67 16 11 C -0.11 -4.76 5.27 30.68 0.16 -4.60 16 12 C -0.12 -4.07 6.09 30.65 0.19 -3.88 16 13 C 0.06 2.14 4.64 86.33 0.40 2.54 16 14 N -0.54 -18.99 4.86 -896.37 -4.35 -23.35 16 15 C 0.06 1.73 5.14 86.30 0.44 2.18 16 16 C 0.04 0.99 2.88 31.20 0.09 1.08 16 17 H 0.05 1.46 6.44 -2.39 -0.02 1.44 16 18 C -0.13 -2.44 6.15 31.35 0.19 -2.25 16 19 C -0.12 -2.07 1.17 -52.12 -0.06 -2.13 16 20 C -0.12 -1.67 7.22 30.82 0.22 -1.45 16 21 C -0.14 -1.69 7.95 31.25 0.25 -1.44 16 22 C -0.13 -1.91 7.29 30.81 0.22 -1.68 16 23 C 0.06 1.28 6.90 72.13 0.50 1.78 16 24 O -0.38 -10.71 8.05 -148.98 -1.20 -11.91 16 25 C 0.09 3.61 4.12 86.33 0.36 3.96 16 26 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.05 1.76 5.52 -2.39 -0.01 1.75 16 32 H 0.08 2.28 8.06 -2.39 -0.02 2.27 16 33 H 0.09 2.20 8.06 -2.39 -0.02 2.18 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 1.52 7.71 -2.39 -0.02 1.50 16 36 H 0.08 1.49 7.97 -2.39 -0.02 1.47 16 37 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.07 0.99 8.05 -2.39 -0.02 0.97 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.03 8.05 -2.38 -0.02 1.01 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 1.17 8.04 -2.39 -0.02 1.15 16 44 H 0.10 1.91 7.91 -2.39 -0.02 1.90 16 45 H 0.06 2.45 8.12 -2.38 -0.02 2.43 16 46 H 0.01 0.55 6.56 -2.39 -0.02 0.53 16 Total: -1.00 -67.07 341.39 1.12 -65.95 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.89 Total: 15.64 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.63 Total: -33.74 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -4.06 Total: -83.66 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -1.20 Total: -11.91 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.85 Total: 47.72 kcal Total: -67.07 1.12 -65.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878886136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.224 kcal (2) G-P(sol) polarization free energy of solvation -67.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds