Wall clock time and date at job start Tue Mar 31 2020 02:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 112.88582 * 2 1 4 4 C 1.54321 * 113.65574 * 228.54136 * 2 1 3 5 5 H 1.09002 * 114.80470 * 104.26823 * 4 2 1 6 6 C 1.52615 * 86.44788 * 219.01351 * 4 2 1 7 7 H 1.08999 * 111.15857 * 274.26766 * 6 4 2 8 8 C 1.50815 * 117.62547 * 144.14511 * 6 4 2 9 9 C 1.51832 * 113.74256 * 329.88100 * 8 6 4 10 10 C 1.52638 * 110.79909 * 44.72777 * 9 8 6 11 11 N 1.46803 * 108.93100 * 297.11703 * 10 9 8 12 12 C 1.46906 * 111.00104 * 189.19594 * 11 10 9 13 13 C 1.52997 * 109.46848 * 66.04538 * 12 11 10 14 14 C 1.50703 * 115.55188 * 34.33348 * 13 12 11 15 15 H 1.08004 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00316 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00298 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46963 * 89.99729 * 18 16 14 20 20 H 1.48493 * 109.47087 * 210.00084 * 18 16 14 21 21 H 1.48503 * 109.46640 * 329.99758 * 18 16 14 22 22 C 1.52995 * 117.50104 * 248.61781 * 13 12 11 23 23 C 1.52991 * 60.00230 * 252.51474 * 22 13 12 24 24 C 1.53279 * 87.63856 * 26.61443 * 6 4 2 25 25 H 1.09001 * 113.73855 * 218.84744 * 24 6 4 26 26 O 1.42903 * 113.73375 * 87.67140 * 24 6 4 27 27 H 1.09005 * 109.46828 * 308.16735 * 1 2 3 28 28 H 1.09005 * 109.46872 * 68.16448 * 1 2 3 29 29 H 1.08999 * 109.47578 * 188.17039 * 1 2 3 30 30 H 1.09000 * 109.46874 * 171.83278 * 3 2 1 31 31 H 1.09000 * 109.47220 * 291.82862 * 3 2 1 32 32 H 1.08998 * 109.47421 * 51.83039 * 3 2 1 33 33 H 1.09000 * 108.63412 * 208.77652 * 8 6 4 34 34 H 1.09000 * 108.62964 * 90.97931 * 8 6 4 35 35 H 1.09000 * 109.21163 * 284.38764 * 9 8 6 36 36 H 1.08993 * 109.21108 * 165.06556 * 9 8 6 37 37 H 1.08999 * 109.56044 * 177.28601 * 10 9 8 38 38 H 1.08999 * 109.65609 * 57.00765 * 10 9 8 39 39 H 1.08998 * 109.47121 * 186.04372 * 12 11 10 40 40 H 1.09000 * 109.47141 * 306.04570 * 12 11 10 41 41 H 0.96998 * 119.99430 * 179.97438 * 17 16 14 42 42 H 1.09000 * 117.49748 * 0.02562 * 22 13 12 43 43 H 1.09007 * 117.50032 * 145.02154 * 22 13 12 44 44 H 1.09005 * 117.49649 * 252.50665 * 23 22 13 45 45 H 1.08998 * 117.51942 * 107.48520 * 23 22 13 46 46 H 0.96704 * 113.99770 * 79.50777 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.4095 0.0000 4 6 2.1492 -0.9359 -1.0594 5 1 2.5561 -0.4298 -1.9348 6 6 3.1954 -1.2827 -0.0037 7 1 4.0159 -0.5653 -0.0124 8 6 3.7049 -2.7016 0.0361 9 6 2.6864 -3.7300 -0.4225 10 6 1.9809 -3.2647 -1.6935 11 7 1.2363 -2.0336 -1.4015 12 6 0.3674 -1.6644 -2.5270 13 6 -0.7268 -2.7205 -2.6943 14 6 -1.2237 -3.3496 -1.4181 15 1 -0.8074 -3.0462 -0.4688 16 6 -2.2097 -4.3123 -1.4624 17 7 -2.7170 -4.6813 -2.6184 18 14 -2.8251 -5.0925 0.1194 19 1 -3.9657 -4.3031 0.6495 20 1 -3.2700 -6.4824 -0.1547 21 1 -1.7287 -5.1121 1.1207 22 6 -0.6717 -3.6032 -3.9427 23 6 -1.7404 -2.5151 -3.8218 24 6 2.1478 -0.9314 1.0586 25 1 2.5571 -0.4065 1.9218 26 8 1.3062 -2.0279 1.4213 27 1 -0.3633 0.6351 0.8080 28 1 -0.3633 0.3823 -0.9540 29 1 -0.3634 -1.0172 0.1460 30 1 3.2035 1.3486 0.1460 31 1 1.9143 1.8929 -0.9540 32 1 1.6813 1.9912 0.8079 33 1 4.0011 -2.9368 1.0584 34 1 4.5847 -2.7738 -0.6034 35 1 1.9469 -3.8782 0.3645 36 1 3.1938 -4.6744 -0.6192 37 1 1.2902 -4.0374 -2.0313 38 1 2.7186 -3.0691 -2.4717 39 1 -0.0904 -0.6950 -2.3297 40 1 0.9600 -1.6073 -3.4400 41 1 -3.4104 -5.3589 -2.6495 42 1 0.1444 -3.4318 -4.6446 43 1 -0.9947 -4.6394 -3.8412 44 1 -2.7665 -2.8354 -3.6408 45 1 -1.6279 -1.6274 -4.4442 46 1 1.7129 -2.6469 2.0430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879131734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:07 Heat of formation + Delta-G solvation = 19.171614 kcal Electronic energy + Delta-G solvation = -24673.731036 eV Core-core repulsion = 21565.465654 eV Total energy + Delta-G solvation = -3108.265382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79069 -36.93635 -35.11437 -34.55739 -32.74366 -31.18873 -29.59030 -27.04905 -26.41559 -25.44222 -24.46724 -22.77319 -21.63653 -20.54826 -18.92489 -18.72854 -17.77407 -16.64986 -15.92181 -15.22715 -14.81758 -14.72625 -14.42119 -14.23888 -13.49855 -13.29562 -13.12060 -12.88373 -12.32939 -12.27646 -12.11164 -11.92391 -11.71784 -11.36410 -11.30398 -10.90440 -10.82525 -10.73252 -10.63686 -10.47733 -10.30846 -10.09750 -9.86676 -9.82879 -9.65666 -9.49110 -9.16405 -8.93249 -8.58069 -8.13116 -7.84276 -7.21705 -5.73795 -3.73495 3.42684 3.49491 3.55502 4.33297 4.49258 4.59985 4.83513 4.84105 5.17627 5.24772 5.29973 5.39526 5.45219 5.59981 5.66247 5.77171 5.82290 5.92611 5.95789 5.98464 6.08368 6.13897 6.23600 6.28527 6.35334 6.38674 6.42211 6.49847 6.52648 6.60181 6.70343 6.83678 6.87804 6.91611 7.01366 7.20234 7.35578 7.44440 7.45289 7.85356 8.05051 8.13044 8.19902 8.29971 8.36577 8.81571 9.32386 9.80482 11.23425 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.007439 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.189944 B = 3762.962254 C = 4013.449359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.077 3.923 5 H 0.038 0.962 6 C -0.138 4.138 7 H 0.081 0.919 8 C -0.097 4.097 9 C -0.112 4.112 10 C 0.068 3.932 11 N -0.471 5.471 12 C 0.099 3.901 13 C 0.029 3.971 14 C -0.436 4.436 15 H 0.085 0.915 16 C 0.047 3.953 17 N -0.892 5.892 18 Si 0.892 3.108 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.273 1.273 22 C -0.196 4.196 23 C -0.192 4.192 24 C 0.107 3.893 25 H 0.049 0.951 26 O -0.509 6.509 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.006 0.994 39 H 0.064 0.936 40 H 0.003 0.997 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.035 0.965 46 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 7.130 5.868 15.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.032 4.032 5 H 0.055 0.945 6 C -0.157 4.157 7 H 0.099 0.901 8 C -0.135 4.135 9 C -0.150 4.150 10 C -0.059 4.059 11 N -0.194 5.194 12 C -0.028 4.028 13 C 0.028 3.972 14 C -0.474 4.474 15 H 0.103 0.897 16 C -0.152 4.152 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.213 1.213 20 H -0.221 1.221 21 H -0.197 1.197 22 C -0.234 4.234 23 C -0.230 4.230 24 C 0.047 3.953 25 H 0.067 0.933 26 O -0.312 6.312 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.021 0.979 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.054 0.946 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 11.120 7.205 5.817 14.471 hybrid contribution 0.654 -0.490 0.143 0.830 sum 11.775 6.714 5.960 14.807 Atomic orbital electron populations 1.21597 0.92335 1.04831 0.99359 1.22078 0.97590 0.92456 0.95301 1.21580 0.99864 0.95063 1.01904 1.22575 0.92625 0.93522 0.94509 0.94467 1.22513 0.96803 0.97294 0.99095 0.90110 1.20535 0.98369 0.94316 1.00290 1.21257 0.97731 0.96262 0.99727 1.21823 0.95655 0.94020 0.94439 1.61775 1.17965 1.00821 1.38850 1.21761 0.93400 0.98884 0.88797 1.18964 0.93626 0.94859 0.89720 1.20809 1.16645 1.17635 0.92329 0.89723 1.25073 0.97034 0.97395 0.95711 1.70044 1.28129 1.31680 1.23338 0.86579 0.79004 0.78010 0.84276 1.21267 1.22059 1.19735 1.22885 0.99134 0.99435 1.01921 1.22804 0.99123 0.97123 1.03963 1.22476 0.90552 0.88824 0.93496 0.93310 1.86765 1.41017 1.37044 1.66345 0.94856 0.93530 0.87977 0.92987 0.92238 0.92428 0.92933 0.93489 0.89801 0.93059 0.88564 0.97547 0.91757 0.97912 0.93721 0.94802 0.87393 0.87212 0.94609 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 7.61 37.16 0.28 -1.85 16 2 C -0.07 -1.08 1.35 -153.37 -0.21 -1.28 16 3 C -0.13 -1.48 9.11 37.15 0.34 -1.15 16 4 C 0.08 1.23 3.04 -67.26 -0.20 1.03 16 5 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 6 C -0.14 -1.84 3.47 -91.81 -0.32 -2.16 16 7 H 0.08 0.95 7.25 -51.93 -0.38 0.58 16 8 C -0.10 -1.27 5.30 -28.42 -0.15 -1.42 16 9 C -0.11 -1.74 5.58 -27.51 -0.15 -1.89 16 10 C 0.07 1.27 5.12 -4.06 -0.02 1.25 16 11 N -0.47 -8.85 1.53 -226.43 -0.35 -9.19 16 12 C 0.10 2.08 4.58 -3.82 -0.02 2.06 16 13 C 0.03 0.71 1.49 -155.66 -0.23 0.48 16 14 C -0.44 -11.51 8.02 -34.44 -0.28 -11.79 16 15 H 0.08 2.27 6.33 -52.48 -0.33 1.94 16 16 C 0.05 1.27 5.28 -17.82 -0.09 1.17 16 17 N -0.89 -25.09 8.59 55.43 0.48 -24.62 16 18 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 C -0.20 -4.92 9.02 -26.74 -0.24 -5.16 16 23 C -0.19 -4.85 9.38 -26.74 -0.25 -5.11 16 24 C 0.11 1.46 4.57 -26.10 -0.12 1.34 16 25 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 26 O -0.51 -7.92 9.24 -35.23 -0.33 -8.25 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.82 6.34 -51.93 -0.33 0.49 16 29 H 0.10 2.12 5.55 -51.93 -0.29 1.84 16 30 H 0.05 0.54 7.05 -51.93 -0.37 0.17 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.41 6.18 -51.93 -0.32 1.09 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.10 2.11 6.39 -51.93 -0.33 1.77 16 38 H 0.01 0.12 8.13 -51.93 -0.42 -0.31 16 39 H 0.06 1.34 5.54 -51.93 -0.29 1.05 16 40 H 0.00 0.06 7.88 -51.93 -0.41 -0.35 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.03 0.79 8.05 -51.93 -0.42 0.37 16 43 H 0.11 3.00 6.29 -51.92 -0.33 2.67 16 44 H 0.11 3.07 6.28 -51.93 -0.33 2.74 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.36 4.34 8.56 45.56 0.39 4.73 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -28.12 330.47 -8.98 -37.10 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.08 Total: 7.85 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -1.67 Total: -24.48 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.13 Total: -33.81 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.33 Total: -8.25 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.12 -8.98 -37.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879131734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.270 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds