Wall clock time and date at job start Tue Mar 31 2020 02:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 112.88582 * 2 1 4 4 C 1.54321 * 113.65574 * 228.54136 * 2 1 3 5 5 H 1.09002 * 114.80470 * 104.26823 * 4 2 1 6 6 C 1.52615 * 86.44788 * 219.01351 * 4 2 1 7 7 H 1.08999 * 111.15857 * 274.26766 * 6 4 2 8 8 C 1.50815 * 117.62547 * 144.14511 * 6 4 2 9 9 C 1.51832 * 113.74256 * 329.88100 * 8 6 4 10 10 C 1.52638 * 110.79909 * 44.72777 * 9 8 6 11 11 N 1.46803 * 108.93100 * 297.11703 * 10 9 8 12 12 C 1.46906 * 111.00104 * 189.19594 * 11 10 9 13 13 C 1.52997 * 109.46848 * 66.04538 * 12 11 10 14 14 C 1.50703 * 115.55188 * 34.33348 * 13 12 11 15 15 H 1.08004 * 119.99748 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00316 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00298 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46963 * 89.99729 * 18 16 14 20 20 H 1.48493 * 109.47087 * 210.00084 * 18 16 14 21 21 H 1.48503 * 109.46640 * 329.99758 * 18 16 14 22 22 C 1.52995 * 117.50104 * 248.61781 * 13 12 11 23 23 C 1.52991 * 60.00230 * 252.51474 * 22 13 12 24 24 C 1.53279 * 87.63856 * 26.61443 * 6 4 2 25 25 H 1.09001 * 113.73855 * 218.84744 * 24 6 4 26 26 O 1.42903 * 113.73375 * 87.67140 * 24 6 4 27 27 H 1.09005 * 109.46828 * 308.16735 * 1 2 3 28 28 H 1.09005 * 109.46872 * 68.16448 * 1 2 3 29 29 H 1.08999 * 109.47578 * 188.17039 * 1 2 3 30 30 H 1.09000 * 109.46874 * 171.83278 * 3 2 1 31 31 H 1.09000 * 109.47220 * 291.82862 * 3 2 1 32 32 H 1.08998 * 109.47421 * 51.83039 * 3 2 1 33 33 H 1.09000 * 108.63412 * 208.77652 * 8 6 4 34 34 H 1.09000 * 108.62964 * 90.97931 * 8 6 4 35 35 H 1.09000 * 109.21163 * 284.38764 * 9 8 6 36 36 H 1.08993 * 109.21108 * 165.06556 * 9 8 6 37 37 H 1.08999 * 109.56044 * 177.28601 * 10 9 8 38 38 H 1.08999 * 109.65609 * 57.00765 * 10 9 8 39 39 H 1.08998 * 109.47121 * 186.04372 * 12 11 10 40 40 H 1.09000 * 109.47141 * 306.04570 * 12 11 10 41 41 H 0.96998 * 119.99430 * 179.97438 * 17 16 14 42 42 H 1.09000 * 117.49748 * 0.02562 * 22 13 12 43 43 H 1.09007 * 117.50032 * 145.02154 * 22 13 12 44 44 H 1.09005 * 117.49649 * 252.50665 * 23 22 13 45 45 H 1.08998 * 117.51942 * 107.48520 * 23 22 13 46 46 H 0.96704 * 113.99770 * 79.50777 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1250 1.4095 0.0000 4 6 2.1492 -0.9359 -1.0594 5 1 2.5561 -0.4298 -1.9348 6 6 3.1954 -1.2827 -0.0037 7 1 4.0159 -0.5653 -0.0124 8 6 3.7049 -2.7016 0.0361 9 6 2.6864 -3.7300 -0.4225 10 6 1.9809 -3.2647 -1.6935 11 7 1.2363 -2.0336 -1.4015 12 6 0.3674 -1.6644 -2.5270 13 6 -0.7268 -2.7205 -2.6943 14 6 -1.2237 -3.3496 -1.4181 15 1 -0.8074 -3.0462 -0.4688 16 6 -2.2097 -4.3123 -1.4624 17 7 -2.7170 -4.6813 -2.6184 18 14 -2.8251 -5.0925 0.1194 19 1 -3.9657 -4.3031 0.6495 20 1 -3.2700 -6.4824 -0.1547 21 1 -1.7287 -5.1121 1.1207 22 6 -0.6717 -3.6032 -3.9427 23 6 -1.7404 -2.5151 -3.8218 24 6 2.1478 -0.9314 1.0586 25 1 2.5571 -0.4065 1.9218 26 8 1.3062 -2.0279 1.4213 27 1 -0.3633 0.6351 0.8080 28 1 -0.3633 0.3823 -0.9540 29 1 -0.3634 -1.0172 0.1460 30 1 3.2035 1.3486 0.1460 31 1 1.9143 1.8929 -0.9540 32 1 1.6813 1.9912 0.8079 33 1 4.0011 -2.9368 1.0584 34 1 4.5847 -2.7738 -0.6034 35 1 1.9469 -3.8782 0.3645 36 1 3.1938 -4.6744 -0.6192 37 1 1.2902 -4.0374 -2.0313 38 1 2.7186 -3.0691 -2.4717 39 1 -0.0904 -0.6950 -2.3297 40 1 0.9600 -1.6073 -3.4400 41 1 -3.4104 -5.3589 -2.6495 42 1 0.1444 -3.4318 -4.6446 43 1 -0.9947 -4.6394 -3.8412 44 1 -2.7665 -2.8354 -3.6408 45 1 -1.6279 -1.6274 -4.4442 46 1 1.7129 -2.6469 2.0430 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879131734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:07 Heat of formation + Delta-G solvation = 4.041414 kcal Electronic energy + Delta-G solvation = -24674.387131 eV Core-core repulsion = 21565.465654 eV Total energy + Delta-G solvation = -3108.921477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.97012 -38.74907 -36.53969 -35.70441 -34.19385 -33.18492 -30.77983 -28.37531 -27.89169 -27.20363 -25.86927 -24.08738 -22.96268 -22.58847 -20.73131 -20.04510 -18.96221 -17.97935 -17.66299 -16.77126 -16.42159 -16.12408 -15.79272 -15.49117 -15.19078 -14.83685 -14.44613 -14.33134 -13.67302 -13.62296 -13.50359 -13.09128 -12.93564 -12.89168 -12.86292 -12.60460 -12.52892 -12.36589 -12.10271 -11.95083 -11.90220 -11.77798 -11.53664 -11.39268 -11.26964 -10.87742 -10.57808 -10.51311 -10.12104 -10.04730 -9.89814 -8.67958 -7.84673 -5.88830 1.45897 1.48164 1.59271 2.55155 3.06732 3.23652 3.37249 3.69228 3.76047 3.99120 4.04587 4.15666 4.29903 4.36092 4.41091 4.53966 4.58067 4.63220 4.67250 4.78267 4.80261 4.82629 4.90778 4.92310 4.97459 5.09441 5.12454 5.15343 5.17380 5.21605 5.30663 5.32048 5.35203 5.35989 5.47685 5.53764 5.60417 5.74069 5.82986 5.99110 6.13734 6.23897 6.49502 6.71361 6.78894 7.19544 7.24220 7.66976 9.10691 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017988 B = 0.007439 C = 0.006975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.189944 B = 3762.962254 C = 4013.449359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 C -0.120 4.120 4 C 0.061 3.939 5 H 0.035 0.965 6 C -0.127 4.127 7 H 0.109 0.891 8 C -0.094 4.094 9 C -0.106 4.106 10 C 0.070 3.930 11 N -0.476 5.476 12 C 0.109 3.891 13 C 0.030 3.970 14 C -0.435 4.435 15 H 0.079 0.921 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.287 1.287 20 H -0.296 1.296 21 H -0.266 1.266 22 C -0.192 4.192 23 C -0.197 4.197 24 C 0.108 3.892 25 H 0.077 0.923 26 O -0.537 6.537 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.007 0.993 39 H 0.064 0.936 40 H 0.001 0.999 41 H 0.248 0.752 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.055 0.945 46 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.480 8.516 7.695 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.076 4.076 3 C -0.178 4.178 4 C -0.048 4.048 5 H 0.053 0.947 6 C -0.145 4.145 7 H 0.127 0.873 8 C -0.131 4.131 9 C -0.144 4.144 10 C -0.058 4.058 11 N -0.199 5.199 12 C -0.019 4.019 13 C 0.029 3.971 14 C -0.473 4.473 15 H 0.097 0.903 16 C -0.197 4.197 17 N -0.556 5.556 18 Si 0.777 3.223 19 H -0.214 1.214 20 H -0.223 1.223 21 H -0.190 1.190 22 C -0.230 4.230 23 C -0.235 4.235 24 C 0.049 3.951 25 H 0.095 0.905 26 O -0.343 6.343 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.082 0.918 40 H 0.019 0.981 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.652 8.593 7.660 17.857 hybrid contribution -0.161 -0.920 -0.462 1.042 sum 13.491 7.673 7.197 17.108 Atomic orbital electron populations 1.21443 0.94766 1.02377 0.98908 1.22200 0.95651 0.94353 0.95413 1.21548 1.01103 0.92841 1.02296 1.22764 0.93599 0.93059 0.95389 0.94690 1.22535 0.96764 0.98202 0.97032 0.87255 1.20498 0.97496 0.93144 1.01968 1.21192 0.97982 0.97740 0.97506 1.21730 0.94826 0.93034 0.96203 1.61705 1.18948 1.01935 1.37308 1.21544 0.92982 0.97474 0.89879 1.19093 0.94115 0.95201 0.88710 1.20936 1.16191 1.17305 0.92824 0.90318 1.25719 0.97614 0.98222 0.98141 1.70203 1.28510 1.32084 1.24792 0.85681 0.78390 0.76856 0.81371 1.21416 1.22282 1.19007 1.22693 0.99460 0.97833 1.03036 1.22698 0.97736 0.97844 1.05246 1.22562 0.90063 0.88221 0.94303 0.90518 1.86738 1.42430 1.38050 1.67036 0.93854 0.94899 0.91800 0.90751 0.92448 0.91396 0.90304 0.92432 0.91224 0.92122 0.92767 0.97467 0.91768 0.98083 0.94210 0.93245 0.90227 0.90019 0.92651 0.77605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.97 7.61 71.98 0.55 -3.42 16 2 C -0.08 -2.02 1.35 -51.44 -0.07 -2.09 16 3 C -0.12 -2.37 9.11 71.98 0.66 -1.72 16 4 C 0.06 1.81 3.04 45.25 0.14 1.95 16 5 H 0.04 1.07 8.07 -2.39 -0.02 1.05 16 6 C -0.13 -2.87 3.47 -11.56 -0.04 -2.91 16 7 H 0.11 1.95 7.25 -2.39 -0.02 1.93 16 8 C -0.09 -2.08 5.30 29.50 0.16 -1.92 16 9 C -0.11 -3.14 5.58 30.09 0.17 -2.97 16 10 C 0.07 2.60 5.12 86.20 0.44 3.04 16 11 N -0.48 -17.71 1.53 -870.29 -1.33 -19.05 16 12 C 0.11 4.63 4.58 86.30 0.40 5.03 16 13 C 0.03 1.48 1.49 -52.93 -0.08 1.40 16 14 C -0.43 -23.55 8.02 25.60 0.21 -23.35 16 15 H 0.08 4.33 6.33 -2.91 -0.02 4.31 16 16 C 0.00 -0.05 5.28 84.65 0.45 0.40 16 17 N -0.91 -53.30 8.59 21.45 0.18 -53.12 16 18 Si 0.95 45.45 29.54 68.60 2.03 47.48 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C -0.19 -9.95 9.02 30.59 0.28 -9.67 16 23 C -0.20 -10.23 9.38 30.59 0.29 -9.94 16 24 C 0.11 2.58 4.57 31.00 0.14 2.72 16 25 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 26 O -0.54 -15.70 9.24 -148.98 -1.38 -17.08 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.03 1.15 6.34 -2.38 -0.02 1.14 16 29 H 0.06 2.67 5.55 -2.39 -0.01 2.66 16 30 H 0.07 1.15 7.05 -2.39 -0.02 1.13 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 2.26 6.18 -2.39 -0.01 2.25 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 2.45 6.39 -2.39 -0.02 2.43 16 38 H 0.01 0.26 8.13 -2.39 -0.02 0.24 16 39 H 0.06 2.71 5.54 -2.39 -0.01 2.70 16 40 H 0.00 0.05 7.88 -2.39 -0.02 0.03 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 42 H 0.05 2.36 8.05 -2.39 -0.02 2.34 16 43 H 0.08 4.61 6.29 -2.38 -0.01 4.59 16 44 H 0.08 4.74 6.28 -2.38 -0.01 4.73 16 45 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.38 8.16 8.56 -74.05 -0.63 7.53 16 Total: -1.00 -62.62 330.47 3.50 -59.12 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.33 Total: 26.10 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 3.67 Total: -43.46 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -1.15 Total: -72.17 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.38 Total: -17.08 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -62.62 3.50 -59.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879131734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.166 kcal (2) G-P(sol) polarization free energy of solvation -62.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds