Wall clock time and date at job start Tue Mar 31 2020 02:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48503 * 109.46595 * 269.99269 * 3 2 1 5 5 H 1.48495 * 109.47325 * 29.99377 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99820 * 3 2 1 7 7 C 1.37885 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99999 * 172.20813 * 7 2 1 9 9 C 1.50698 * 119.99536 * 352.21304 * 7 2 1 10 10 C 1.53002 * 115.55066 * 294.87200 * 9 7 2 11 11 N 1.46905 * 109.47130 * 275.35200 * 10 9 7 12 12 C 1.46898 * 110.99979 * 185.68646 * 11 10 9 13 13 C 1.52997 * 112.85023 * 173.72691 * 12 11 10 14 14 H 1.08998 * 109.48133 * 195.19570 * 13 12 11 15 15 C 1.53097 * 109.48110 * 315.22931 * 13 12 11 16 16 C 1.53175 * 109.16469 * 177.59123 * 15 13 12 17 17 C 1.53184 * 109.03464 * 303.02057 * 16 15 13 18 18 C 1.53088 * 109.16181 * 56.98222 * 17 16 15 19 19 O 1.42899 * 109.48147 * 75.17021 * 13 12 11 20 20 C 1.53780 * 113.61762 * 304.92418 * 12 11 10 21 21 C 1.53784 * 87.08307 * 89.11531 * 20 12 11 22 22 C 1.53790 * 87.17093 * 25.38779 * 21 20 12 23 23 C 1.52999 * 117.52136 * 80.57658 * 9 7 2 24 24 C 1.53001 * 60.00212 * 107.47625 * 23 9 7 25 25 H 0.97000 * 120.00676 * 5.01868 * 1 2 3 26 26 H 1.08998 * 109.47310 * 155.35772 * 10 9 7 27 27 H 1.08994 * 109.47013 * 35.35040 * 10 9 7 28 28 H 1.00897 * 110.99831 * 61.73556 * 11 10 9 29 29 H 1.08999 * 109.52205 * 297.50055 * 15 13 12 30 30 H 1.08998 * 109.51900 * 57.68433 * 15 13 12 31 31 H 1.09004 * 109.54286 * 183.15633 * 16 15 13 32 32 H 1.09000 * 109.61781 * 62.92875 * 16 15 13 33 33 H 1.09003 * 109.51847 * 297.07298 * 17 16 15 34 34 H 1.09002 * 109.51640 * 176.88679 * 17 16 15 35 35 H 1.09004 * 109.47552 * 182.40854 * 18 17 16 36 36 H 1.08995 * 109.49174 * 62.37848 * 18 17 16 37 37 H 1.09000 * 113.61240 * 334.56630 * 20 12 11 38 38 H 1.08994 * 113.61770 * 203.66297 * 20 12 11 39 39 H 1.08999 * 113.61703 * 139.97996 * 21 20 12 40 40 H 1.08998 * 113.61166 * 270.80679 * 21 20 12 41 41 H 1.09006 * 113.60726 * 89.15546 * 22 21 20 42 42 H 1.08992 * 113.61292 * 220.05859 * 22 21 20 43 43 H 1.08993 * 117.49891 * 214.96729 * 23 9 7 44 44 H 1.08997 * 117.49627 * 359.97438 * 23 9 7 45 45 H 1.08998 * 117.50568 * 252.51207 * 24 23 9 46 46 H 1.09000 * 117.51872 * 107.47533 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0770 -1.1984 -0.1263 9 6 1.2614 -2.4930 0.1779 10 6 0.5825 -2.6848 1.5356 11 7 1.5549 -3.2194 2.4982 12 6 0.9070 -3.5434 3.7762 13 6 1.8475 -4.2448 4.7582 14 1 1.2642 -4.6963 5.5607 15 6 2.6334 -5.3338 4.0231 16 6 3.6152 -5.9905 4.9983 17 6 4.5291 -4.9123 5.5888 18 6 3.6700 -3.8397 6.2635 19 8 2.7584 -3.2916 5.3091 20 6 0.1397 -2.3629 4.3946 21 6 -1.0830 -2.8395 3.5929 22 6 -0.4549 -4.2431 3.6150 23 6 0.5642 -3.0821 -1.0500 24 6 1.8365 -3.7350 -0.5060 25 1 -0.4851 0.8368 -0.0735 26 1 -0.2474 -3.3837 1.4314 27 1 0.2072 -1.7258 1.8928 28 1 2.3205 -2.5764 2.6338 29 1 1.9431 -6.0853 3.6398 30 1 3.1851 -4.8887 3.1951 31 1 4.2173 -6.7284 4.4679 32 1 3.0624 -6.4793 5.8005 33 1 5.1192 -4.4587 4.7924 34 1 5.1946 -5.3625 6.3254 35 1 4.3129 -3.0480 6.6483 36 1 3.1107 -4.2858 7.0858 37 1 0.5134 -1.3877 4.0825 38 1 0.0120 -2.4426 5.4741 39 1 -2.0205 -2.7719 4.1448 40 1 -1.1470 -2.4055 2.5951 41 1 -0.7454 -4.8378 4.4811 42 1 -0.5606 -4.7835 2.6744 43 1 -0.3781 -3.6062 -0.8906 44 1 0.6426 -2.5299 -1.9864 45 1 2.7521 -3.6125 -1.0846 46 1 1.7315 -4.6886 0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879737913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:56 Heat of formation + Delta-G solvation = 0.336146 kcal Electronic energy + Delta-G solvation = -23687.693197 eV Core-core repulsion = 20578.611048 eV Total energy + Delta-G solvation = -3109.082149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -40.23122 -38.31499 -36.20676 -33.44987 -31.96005 -31.61432 -31.00110 -26.68855 -25.49726 -25.48187 -23.96478 -23.35210 -21.65334 -20.94434 -19.88661 -19.03178 -18.35527 -16.43857 -15.99703 -15.79099 -15.05856 -14.80322 -14.62098 -14.39363 -14.11942 -13.90529 -13.53518 -12.89226 -12.62464 -12.47117 -12.30014 -12.12967 -11.56661 -11.53523 -11.15489 -11.09858 -10.99236 -10.91633 -10.87797 -10.77233 -10.45954 -10.31491 -10.27294 -10.07025 -9.88348 -9.69740 -9.18888 -9.12846 -8.74228 -8.40629 -8.00928 -7.35539 -5.99303 -4.02976 3.30606 3.38243 3.42418 3.90573 4.43419 4.74787 4.84537 4.90368 4.95917 5.04107 5.16661 5.24767 5.27838 5.29695 5.37032 5.43137 5.59921 5.64173 5.68356 5.81977 5.91356 5.98954 6.03507 6.08297 6.14110 6.20391 6.26743 6.33248 6.35934 6.49790 6.55624 6.59804 6.67060 6.71333 6.79671 6.93571 7.01447 7.07291 7.21397 7.47310 7.56748 7.64832 7.94100 8.09330 8.34122 8.55464 8.98226 9.60397 11.08152 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.005783 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.744243 B = 4840.968724 C = 5054.329560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.071 3.929 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.492 4.492 8 H 0.058 0.942 9 C 0.053 3.947 10 C 0.099 3.901 11 N -0.652 5.652 12 C 0.108 3.892 13 C 0.115 3.885 14 H 0.050 0.950 15 C -0.138 4.138 16 C -0.124 4.124 17 C -0.156 4.156 18 C 0.063 3.937 19 O -0.373 6.373 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.128 4.128 23 C -0.179 4.179 24 C -0.194 4.194 25 H 0.259 0.741 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.350 0.650 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 -9.669 11.618 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.132 4.132 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.052 3.948 10 C -0.029 4.029 11 N -0.283 5.283 12 C 0.015 3.985 13 C 0.057 3.943 14 H 0.068 0.932 15 C -0.176 4.176 16 C -0.161 4.161 17 C -0.193 4.193 18 C -0.014 4.014 19 O -0.292 6.292 20 C -0.200 4.200 21 C -0.198 4.198 22 C -0.166 4.166 23 C -0.217 4.217 24 C -0.231 4.231 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.170 0.830 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.342 -9.979 11.380 15.315 hybrid contribution 0.250 1.527 0.403 1.598 sum 2.592 -8.453 11.782 14.730 Atomic orbital electron populations 1.69969 1.05799 1.26556 1.49296 1.24954 0.94750 0.98700 0.94771 0.86710 0.80143 0.83847 0.78083 1.20807 1.21283 1.19767 1.20546 0.93216 0.89168 1.50098 0.92411 1.18827 0.96842 0.90819 0.88298 1.21804 0.92471 0.96957 0.91657 1.60471 1.11760 1.49887 1.06153 1.21978 0.91032 0.95226 0.90235 1.22041 0.89529 0.89176 0.93548 0.93191 1.22028 0.98564 0.97915 0.99076 1.21636 0.97943 0.97607 0.98957 1.22180 0.98702 0.97418 1.01036 1.22477 0.91580 0.96607 0.90765 1.87988 1.47610 1.34975 1.58600 1.23462 0.97474 0.99959 0.99123 1.23410 0.96910 0.96616 1.02876 1.23052 0.94819 0.96893 1.01802 1.22713 0.93532 1.04549 1.00927 1.22704 0.96534 0.97779 1.06075 0.93125 0.93503 0.92751 0.83008 0.91376 0.89087 0.91868 0.92687 0.90833 0.91656 0.89386 0.93973 0.91287 0.91044 0.92558 0.87281 0.90715 0.90698 0.92280 0.90714 0.91329 0.91194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 12.59 55.43 0.70 -23.81 16 2 C 0.07 1.92 5.22 -17.82 -0.09 1.83 16 3 Si 0.88 21.13 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -13.26 8.83 -34.44 -0.30 -13.56 16 8 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 9 C 0.05 1.28 1.50 -155.66 -0.23 1.05 16 10 C 0.10 2.16 3.67 -3.82 -0.01 2.15 16 11 N -0.65 -12.46 5.19 -99.05 -0.51 -12.97 16 12 C 0.11 1.77 1.05 -130.70 -0.14 1.63 16 13 C 0.12 1.66 2.38 -26.68 -0.06 1.60 16 14 H 0.05 0.67 7.88 -51.93 -0.41 0.26 16 15 C -0.14 -1.88 5.15 -26.59 -0.14 -2.01 16 16 C -0.12 -1.38 6.03 -26.55 -0.16 -1.54 16 17 C -0.16 -1.69 6.14 -26.59 -0.16 -1.85 16 18 C 0.06 0.74 6.84 37.20 0.25 0.99 16 19 O -0.37 -5.70 10.10 -35.23 -0.36 -6.05 16 20 C -0.16 -2.70 6.65 -25.92 -0.17 -2.87 16 21 C -0.16 -2.66 7.26 -25.91 -0.19 -2.85 16 22 C -0.13 -1.94 6.85 -25.82 -0.18 -2.11 16 23 C -0.18 -4.22 9.88 -26.73 -0.26 -4.48 16 24 C -0.19 -4.29 9.85 -26.73 -0.26 -4.55 16 25 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 26 H 0.05 1.00 5.13 -51.93 -0.27 0.74 16 27 H 0.05 1.34 5.21 -51.93 -0.27 1.06 16 28 H 0.35 7.33 8.87 -39.29 -0.35 6.98 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 1.44 7.38 -51.93 -0.38 1.06 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 1.33 7.84 -51.93 -0.41 0.92 16 38 H 0.07 1.10 8.10 -51.93 -0.42 0.67 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 2.11 4.65 -51.93 -0.24 1.87 16 41 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 42 H 0.07 1.20 7.05 -51.93 -0.37 0.83 16 43 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 44 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 45 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -27.12 349.83 -10.18 -37.30 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.14 Total: 10.75 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -2.11 Total: -26.58 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.18 Total: -36.79 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.36 Total: -6.05 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.12 -10.18 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879737913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.633 kcal (2) G-P(sol) polarization free energy of solvation -27.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.70 seconds