Wall clock time and date at job start Tue Mar 31 2020 02:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48503 * 109.46595 * 269.99269 * 3 2 1 5 5 H 1.48495 * 109.47325 * 29.99377 * 3 2 1 6 6 H 1.48498 * 109.47161 * 149.99820 * 3 2 1 7 7 C 1.37885 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99999 * 172.20813 * 7 2 1 9 9 C 1.50698 * 119.99536 * 352.21304 * 7 2 1 10 10 C 1.53002 * 115.55066 * 294.87200 * 9 7 2 11 11 N 1.46905 * 109.47130 * 275.35200 * 10 9 7 12 12 C 1.46898 * 110.99979 * 185.68646 * 11 10 9 13 13 C 1.52997 * 112.85023 * 173.72691 * 12 11 10 14 14 H 1.08998 * 109.48133 * 195.19570 * 13 12 11 15 15 C 1.53097 * 109.48110 * 315.22931 * 13 12 11 16 16 C 1.53175 * 109.16469 * 177.59123 * 15 13 12 17 17 C 1.53184 * 109.03464 * 303.02057 * 16 15 13 18 18 C 1.53088 * 109.16181 * 56.98222 * 17 16 15 19 19 O 1.42899 * 109.48147 * 75.17021 * 13 12 11 20 20 C 1.53780 * 113.61762 * 304.92418 * 12 11 10 21 21 C 1.53784 * 87.08307 * 89.11531 * 20 12 11 22 22 C 1.53790 * 87.17093 * 25.38779 * 21 20 12 23 23 C 1.52999 * 117.52136 * 80.57658 * 9 7 2 24 24 C 1.53001 * 60.00212 * 107.47625 * 23 9 7 25 25 H 0.97000 * 120.00676 * 5.01868 * 1 2 3 26 26 H 1.08998 * 109.47310 * 155.35772 * 10 9 7 27 27 H 1.08994 * 109.47013 * 35.35040 * 10 9 7 28 28 H 1.00897 * 110.99831 * 61.73556 * 11 10 9 29 29 H 1.08999 * 109.52205 * 297.50055 * 15 13 12 30 30 H 1.08998 * 109.51900 * 57.68433 * 15 13 12 31 31 H 1.09004 * 109.54286 * 183.15633 * 16 15 13 32 32 H 1.09000 * 109.61781 * 62.92875 * 16 15 13 33 33 H 1.09003 * 109.51847 * 297.07298 * 17 16 15 34 34 H 1.09002 * 109.51640 * 176.88679 * 17 16 15 35 35 H 1.09004 * 109.47552 * 182.40854 * 18 17 16 36 36 H 1.08995 * 109.49174 * 62.37848 * 18 17 16 37 37 H 1.09000 * 113.61240 * 334.56630 * 20 12 11 38 38 H 1.08994 * 113.61770 * 203.66297 * 20 12 11 39 39 H 1.08999 * 113.61703 * 139.97996 * 21 20 12 40 40 H 1.08998 * 113.61166 * 270.80679 * 21 20 12 41 41 H 1.09006 * 113.60726 * 89.15546 * 22 21 20 42 42 H 1.08992 * 113.61292 * 220.05859 * 22 21 20 43 43 H 1.08993 * 117.49891 * 214.96729 * 23 9 7 44 44 H 1.08997 * 117.49627 * 359.97438 * 23 9 7 45 45 H 1.08998 * 117.50568 * 252.51207 * 24 23 9 46 46 H 1.09000 * 117.51872 * 107.47533 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0462 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0770 -1.1984 -0.1263 9 6 1.2614 -2.4930 0.1779 10 6 0.5825 -2.6848 1.5356 11 7 1.5549 -3.2194 2.4982 12 6 0.9070 -3.5434 3.7762 13 6 1.8475 -4.2448 4.7582 14 1 1.2642 -4.6963 5.5607 15 6 2.6334 -5.3338 4.0231 16 6 3.6152 -5.9905 4.9983 17 6 4.5291 -4.9123 5.5888 18 6 3.6700 -3.8397 6.2635 19 8 2.7584 -3.2916 5.3091 20 6 0.1397 -2.3629 4.3946 21 6 -1.0830 -2.8395 3.5929 22 6 -0.4549 -4.2431 3.6150 23 6 0.5642 -3.0821 -1.0500 24 6 1.8365 -3.7350 -0.5060 25 1 -0.4851 0.8368 -0.0735 26 1 -0.2474 -3.3837 1.4314 27 1 0.2072 -1.7258 1.8928 28 1 2.3205 -2.5764 2.6338 29 1 1.9431 -6.0853 3.6398 30 1 3.1851 -4.8887 3.1951 31 1 4.2173 -6.7284 4.4679 32 1 3.0624 -6.4793 5.8005 33 1 5.1192 -4.4587 4.7924 34 1 5.1946 -5.3625 6.3254 35 1 4.3129 -3.0480 6.6483 36 1 3.1107 -4.2858 7.0858 37 1 0.5134 -1.3877 4.0825 38 1 0.0120 -2.4426 5.4741 39 1 -2.0205 -2.7719 4.1448 40 1 -1.1470 -2.4055 2.5951 41 1 -0.7454 -4.8378 4.4811 42 1 -0.5606 -4.7835 2.6744 43 1 -0.3781 -3.6062 -0.8906 44 1 0.6426 -2.5299 -1.9864 45 1 2.7521 -3.6125 -1.0846 46 1 1.7315 -4.6886 0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879737913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:53 Heat of formation + Delta-G solvation = -14.128758 kcal Electronic energy + Delta-G solvation = -23688.320442 eV Core-core repulsion = 20578.611048 eV Total energy + Delta-G solvation = -3109.709395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.51178 -39.48133 -38.00592 -34.43074 -34.03956 -33.07012 -32.16287 -28.09891 -27.43457 -26.74441 -25.22950 -24.57235 -22.88761 -22.79810 -20.96735 -20.82352 -19.72960 -18.13721 -17.21869 -17.05936 -16.64094 -16.37437 -16.02877 -15.82741 -15.37502 -15.22429 -14.90140 -14.35655 -13.99352 -13.66903 -13.58226 -13.47216 -13.32358 -12.99754 -12.90446 -12.79420 -12.61323 -12.35723 -12.09578 -12.01385 -11.94191 -11.82080 -11.75493 -11.44615 -11.15880 -11.05310 -10.80116 -10.71144 -10.37367 -10.19258 -9.91082 -8.95190 -8.08321 -6.16986 1.37557 1.40822 1.49519 2.42086 2.86135 3.15815 3.28866 3.67647 3.72179 3.83492 3.93554 4.03414 4.09700 4.11414 4.21685 4.28567 4.41085 4.44180 4.62533 4.65886 4.71693 4.79572 4.81148 4.83679 4.86389 4.93832 5.05683 5.06421 5.07282 5.08721 5.11724 5.14936 5.20479 5.28641 5.31011 5.35363 5.37473 5.54220 5.64068 5.68583 5.69994 5.91880 6.42306 6.49022 6.53490 6.66276 6.91695 7.48402 8.98152 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.005783 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.744243 B = 4840.968724 C = 5054.329560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.030 3.970 3 Si 0.940 3.060 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.046 0.954 9 C 0.028 3.972 10 C 0.123 3.877 11 N -0.645 5.645 12 C 0.100 3.900 13 C 0.120 3.880 14 H 0.071 0.929 15 C -0.135 4.135 16 C -0.120 4.120 17 C -0.153 4.153 18 C 0.056 3.944 19 O -0.402 6.402 20 C -0.157 4.157 21 C -0.163 4.163 22 C -0.114 4.114 23 C -0.184 4.184 24 C -0.169 4.169 25 H 0.258 0.742 26 H 0.051 0.949 27 H 0.022 0.978 28 H 0.336 0.664 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 -11.318 13.522 17.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.006 4.006 11 N -0.274 5.274 12 C 0.008 3.992 13 C 0.062 3.938 14 H 0.089 0.911 15 C -0.173 4.173 16 C -0.157 4.157 17 C -0.191 4.191 18 C -0.020 4.020 19 O -0.321 6.321 20 C -0.197 4.197 21 C -0.200 4.200 22 C -0.151 4.151 23 C -0.222 4.222 24 C -0.207 4.207 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.154 0.846 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.710 -11.642 13.284 17.870 hybrid contribution 0.157 2.045 -0.175 2.059 sum 2.867 -9.597 13.109 16.498 Atomic orbital electron populations 1.70066 1.06823 1.27051 1.50085 1.25552 0.95457 1.01395 0.94640 0.85834 0.79005 0.80445 0.78092 1.20335 1.21138 1.19557 1.20777 0.92908 0.90804 1.50031 0.93549 1.18994 0.97809 0.90853 0.89660 1.21421 0.92588 0.95518 0.91062 1.60460 1.10855 1.48555 1.07546 1.22160 0.92249 0.95458 0.89332 1.21996 0.89470 0.88840 0.93512 0.91091 1.21958 0.98854 0.97699 0.98802 1.21619 0.97592 0.97613 0.98888 1.22162 0.98713 0.97125 1.01055 1.22704 0.91480 0.97273 0.90585 1.87953 1.48435 1.36145 1.59614 1.23433 0.97709 0.98293 1.00266 1.23293 0.97887 0.97598 1.01209 1.23037 0.93198 0.96058 1.02857 1.22654 0.94795 1.04919 0.99849 1.22656 0.95610 0.97619 1.04784 0.93255 0.93115 0.96007 0.84563 0.91050 0.91949 0.91127 0.90890 0.92618 0.89158 0.88662 0.92145 0.94803 0.88991 0.90577 0.90719 0.87356 0.91483 0.91157 0.92594 0.91471 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.66 12.59 21.45 0.27 -51.39 16 2 C 0.03 1.66 5.22 84.66 0.44 2.10 16 3 Si 0.94 44.22 29.55 68.60 2.03 46.25 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.51 -28.02 8.83 25.60 0.23 -27.79 16 8 H 0.05 2.60 7.83 -2.91 -0.02 2.58 16 9 C 0.03 1.36 1.50 -52.93 -0.08 1.28 16 10 C 0.12 5.49 3.67 86.30 0.32 5.81 16 11 N -0.65 -24.94 5.19 -467.29 -2.42 -27.36 16 12 C 0.10 3.19 1.05 4.11 0.00 3.19 16 13 C 0.12 3.20 2.38 30.63 0.07 3.27 16 14 H 0.07 1.63 7.88 -2.39 -0.02 1.61 16 15 C -0.14 -3.42 5.15 30.69 0.16 -3.26 16 16 C -0.12 -2.32 6.03 30.71 0.19 -2.13 16 17 C -0.15 -2.93 6.14 30.69 0.19 -2.75 16 18 C 0.06 1.18 6.84 72.01 0.49 1.67 16 19 O -0.40 -11.73 10.10 -148.98 -1.51 -13.23 16 20 C -0.16 -5.24 6.65 31.12 0.21 -5.03 16 21 C -0.16 -5.28 7.26 31.12 0.23 -5.05 16 22 C -0.11 -3.21 6.85 31.18 0.21 -3.00 16 23 C -0.18 -8.76 9.88 30.59 0.30 -8.46 16 24 C -0.17 -7.46 9.85 30.60 0.30 -7.16 16 25 H 0.26 14.23 8.32 -92.71 -0.77 13.46 16 26 H 0.05 2.20 5.13 -2.39 -0.01 2.19 16 27 H 0.02 1.12 5.21 -2.39 -0.01 1.11 16 28 H 0.34 14.55 8.87 -89.70 -0.80 13.76 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.94 7.38 -2.39 -0.02 1.92 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.03 1.34 7.84 -2.39 -0.02 1.33 16 38 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 2.98 4.65 -2.39 -0.01 2.97 16 41 H 0.11 2.36 7.92 -2.38 -0.02 2.34 16 42 H 0.07 2.02 7.05 -2.39 -0.02 2.00 16 43 H 0.07 3.14 8.05 -2.39 -0.02 3.12 16 44 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 45 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 Total: -1.00 -59.42 349.83 1.78 -57.64 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.15 Total: 35.39 kcal Atomic # 6 Polarization: -50.55 SS G_CDS: 3.26 Total: -47.30 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.15 Total: -78.75 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.51 Total: -13.23 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -59.42 1.78 -57.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879737913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.513 kcal (2) G-P(sol) polarization free energy of solvation -59.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds