Wall clock time and date at job start Tue Mar 31 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48494 * 109.46989 * 264.93965 * 3 2 1 5 5 H 1.48495 * 109.46957 * 24.94058 * 3 2 1 6 6 H 1.48499 * 109.46841 * 144.94260 * 3 2 1 7 7 C 1.37877 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 4.84149 * 7 2 1 9 9 C 1.50699 * 119.99617 * 184.83671 * 7 2 1 10 10 C 1.52998 * 115.56089 * 88.99885 * 9 7 2 11 11 N 1.46901 * 109.47689 * 77.40158 * 10 9 7 12 12 C 1.46840 * 110.99640 * 46.42389 * 11 10 9 13 13 C 1.53052 * 109.51242 * 185.86287 * 12 11 10 14 14 C 1.53062 * 109.26435 * 300.88039 * 13 12 11 15 15 C 1.53027 * 109.50549 * 177.54129 * 14 13 12 16 16 C 1.53185 * 109.18031 * 177.58659 * 15 14 13 17 17 C 1.53175 * 109.03430 * 303.10717 * 16 15 14 18 18 C 1.53098 * 109.16915 * 57.00904 * 17 16 15 19 19 O 1.42856 * 109.51543 * 297.66298 * 14 13 12 20 20 C 1.53063 * 109.25148 * 57.62222 * 14 13 12 21 21 C 1.46834 * 111.00159 * 170.67975 * 11 10 9 22 22 C 1.53001 * 117.49927 * 234.68071 * 9 7 2 23 23 C 1.52990 * 60.00120 * 107.49243 * 22 9 7 24 24 H 0.97001 * 120.00032 * 4.99786 * 1 2 3 25 25 H 1.09000 * 109.47053 * 197.40265 * 10 9 7 26 26 H 1.09000 * 109.47095 * 317.40061 * 10 9 7 27 27 H 1.09008 * 109.46684 * 305.87499 * 12 11 10 28 28 H 1.09000 * 109.46741 * 65.84684 * 12 11 10 29 29 H 1.09008 * 109.50511 * 180.94534 * 13 12 11 30 30 H 1.09002 * 109.50939 * 60.81795 * 13 12 11 31 31 H 1.09006 * 109.51698 * 297.49182 * 15 14 13 32 32 H 1.08995 * 109.52112 * 57.67466 * 15 14 13 33 33 H 1.08991 * 109.54693 * 183.23621 * 16 15 14 34 34 H 1.09008 * 109.61575 * 63.01706 * 16 15 14 35 35 H 1.09000 * 109.52206 * 297.10577 * 17 16 15 36 36 H 1.09000 * 109.57593 * 176.94223 * 17 16 15 37 37 H 1.09004 * 109.48391 * 182.36623 * 18 17 16 38 38 H 1.08998 * 109.48186 * 62.32790 * 18 17 16 39 39 H 1.08999 * 109.50944 * 182.44920 * 20 14 13 40 40 H 1.09000 * 109.50641 * 62.32048 * 20 14 13 41 41 H 1.09001 * 109.46322 * 294.16125 * 21 11 10 42 42 H 1.09000 * 109.46573 * 54.12931 * 21 11 10 43 43 H 1.09002 * 117.50040 * 0.02562 * 22 9 7 44 44 H 1.09001 * 117.50150 * 214.98715 * 22 9 7 45 45 H 1.08999 * 117.50153 * 107.48911 * 23 22 9 46 46 H 1.09006 * 117.50296 * 252.51500 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6036 1.9847 -1.3946 5 1 1.3972 2.6811 0.5904 6 1 3.4892 1.4734 0.8042 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1963 0.1106 10 6 4.0651 -1.2307 1.5349 11 7 3.9627 -2.5957 2.0681 12 6 4.4401 -3.5802 1.0889 13 6 4.1839 -4.9933 1.6182 14 6 4.9146 -5.1736 2.9510 15 6 4.6125 -6.5635 3.5154 16 6 5.3947 -6.7586 4.8180 17 6 6.8871 -6.5542 4.5399 18 6 7.1003 -5.1628 3.9378 19 8 6.3218 -5.0368 2.7460 20 6 4.4353 -4.1062 3.9377 21 6 4.6840 -2.7188 3.3411 22 6 4.2942 -1.9350 -0.9740 23 6 4.2938 -0.4056 -0.9370 24 1 -0.4850 0.8369 -0.0732 25 1 5.1106 -0.9226 1.5234 26 1 3.4928 -0.5504 2.1657 27 1 3.9085 -3.4432 0.1472 28 1 5.5089 -3.4416 0.9259 29 1 4.5536 -5.7240 0.8987 30 1 3.1138 -5.1377 1.7674 31 1 3.5446 -6.6511 3.7153 32 1 4.9124 -7.3229 2.7933 33 1 5.2290 -7.7677 5.1952 34 1 5.0590 -6.0328 5.5587 35 1 7.2339 -7.3120 3.8375 36 1 7.4469 -6.6375 5.4715 37 1 8.1552 -5.0277 3.6989 38 1 6.7901 -4.4043 4.6565 39 1 4.9844 -4.2034 4.8743 40 1 3.3694 -4.2360 4.1250 41 1 5.7517 -2.5840 3.1681 42 1 4.3295 -1.9564 4.0348 43 1 3.7247 -2.4191 -1.7674 44 1 5.2089 -2.4456 -0.6728 45 1 5.2082 0.0903 -0.6114 46 1 3.7239 0.1164 -1.7058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880459098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:52 Heat of formation + Delta-G solvation = -12.736337 kcal Electronic energy + Delta-G solvation = -23736.916911 eV Core-core repulsion = 20627.267896 eV Total energy + Delta-G solvation = -3109.649015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.45782 -38.19377 -35.72779 -33.70222 -32.59483 -31.97398 -30.45551 -28.86092 -26.25994 -24.95969 -23.87657 -23.47236 -22.15285 -21.57670 -19.90471 -19.08100 -18.81239 -16.45673 -16.05615 -15.80478 -15.01143 -14.95119 -14.81011 -14.43261 -14.14145 -13.78156 -13.73439 -13.39561 -12.76237 -12.72722 -12.61417 -12.39308 -12.16917 -11.87087 -11.61060 -11.29310 -11.19169 -11.08722 -10.96242 -10.88296 -10.73262 -10.57465 -10.30756 -10.20998 -10.05108 -9.64210 -9.32016 -9.20188 -8.84888 -8.42456 -8.36983 -7.46530 -5.99635 -4.00011 3.35575 3.45168 3.49785 3.82919 4.42515 4.51821 4.66649 4.71124 4.73991 4.86344 4.98954 5.10674 5.19190 5.27500 5.32334 5.38944 5.48239 5.61319 5.70272 5.70858 5.73119 5.81785 5.86108 5.88213 5.93476 5.97671 6.08420 6.10913 6.14163 6.18322 6.23473 6.26640 6.30874 6.37341 6.47428 6.53434 6.64447 6.69881 6.92569 7.11981 7.28850 7.38735 7.79621 7.90411 7.90571 8.62896 9.05163 9.63818 11.12546 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032093 B = 0.004716 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.256341 B = 5935.894516 C = 6056.888260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.467 4.467 8 H 0.079 0.921 9 C 0.008 3.992 10 C 0.098 3.902 11 N -0.518 5.518 12 C 0.048 3.952 13 C -0.101 4.101 14 C 0.119 3.881 15 C -0.142 4.142 16 C -0.123 4.123 17 C -0.154 4.154 18 C 0.057 3.943 19 O -0.369 6.369 20 C -0.138 4.138 21 C 0.059 3.941 22 C -0.188 4.188 23 C -0.208 4.208 24 H 0.262 0.738 25 H 0.006 0.994 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.948 -11.290 8.765 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.127 4.127 3 Si 0.710 3.290 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.504 4.504 8 H 0.097 0.903 9 C 0.007 3.993 10 C -0.029 4.029 11 N -0.242 5.242 12 C -0.079 4.079 13 C -0.139 4.139 14 C 0.079 3.921 15 C -0.179 4.179 16 C -0.160 4.160 17 C -0.192 4.192 18 C -0.020 4.020 19 O -0.288 6.288 20 C -0.176 4.176 21 C -0.069 4.069 22 C -0.225 4.225 23 C -0.245 4.245 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.357 -11.230 8.751 18.852 hybrid contribution 1.244 1.098 0.167 1.668 sum 13.601 -10.132 8.918 19.162 Atomic orbital electron populations 1.69911 1.06252 1.27126 1.50639 1.24942 0.94534 0.98770 0.94425 0.86861 0.80043 0.83707 0.78423 1.20684 1.22566 1.18804 1.20211 0.86412 0.94486 1.49303 0.90315 1.19485 0.94739 0.98818 0.86286 1.21858 0.95758 0.88502 0.96795 1.61782 1.55007 1.04629 1.02777 1.22594 0.97674 0.90117 0.97551 1.21662 1.00087 0.97953 0.94201 1.21527 0.81141 0.92948 0.96435 1.22158 1.00785 0.97724 0.97271 1.21611 0.94907 1.01743 0.97777 1.22168 0.97041 0.98780 1.01193 1.22517 0.95762 0.95426 0.88313 1.87979 1.17171 1.92763 1.30875 1.22167 1.02496 0.95103 0.97789 1.21952 0.95772 0.96303 0.92911 1.23098 1.01801 0.93405 1.04221 1.23112 1.01710 0.94463 1.05254 0.92787 0.97640 0.90995 0.87417 0.95400 0.91518 0.89753 0.90779 0.91320 0.91883 0.91631 0.91340 0.91387 0.89508 0.93082 0.91736 0.90094 0.95479 0.91478 0.89396 0.90442 0.91237 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.95 55.43 0.77 -26.76 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 22.01 24.88 -169.99 -4.23 17.78 16 4 H -0.28 -6.87 6.93 56.52 0.39 -6.48 16 5 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.26 -6.30 6.70 56.52 0.38 -5.92 16 7 C -0.47 -12.93 9.45 -34.44 -0.33 -13.26 16 8 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.01 0.18 0.50 -155.66 -0.08 0.11 16 10 C 0.10 2.11 5.00 -3.82 -0.02 2.09 16 11 N -0.52 -10.00 4.80 -234.66 -1.13 -11.13 16 12 C 0.05 0.86 3.75 -3.83 -0.01 0.84 16 13 C -0.10 -1.53 5.11 -26.67 -0.14 -1.67 16 14 C 0.12 1.59 0.68 -90.54 -0.06 1.52 16 15 C -0.14 -1.57 4.92 -26.62 -0.13 -1.70 16 16 C -0.12 -1.16 5.72 -26.55 -0.15 -1.31 16 17 C -0.15 -1.41 6.13 -26.59 -0.16 -1.57 16 18 C 0.06 0.61 6.52 37.21 0.24 0.86 16 19 O -0.37 -5.16 9.09 -35.23 -0.32 -5.48 16 20 C -0.14 -1.88 4.21 -26.67 -0.11 -1.99 16 21 C 0.06 0.96 5.30 -3.83 -0.02 0.94 16 22 C -0.19 -3.83 7.11 -26.74 -0.19 -4.02 16 23 C -0.21 -4.50 7.32 -26.74 -0.20 -4.70 16 24 H 0.26 7.57 8.32 -40.82 -0.34 7.23 16 25 H 0.01 0.11 7.92 -51.93 -0.41 -0.30 16 26 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.11 2.11 4.49 -51.92 -0.23 1.87 16 28 H 0.03 0.51 6.96 -51.93 -0.36 0.15 16 29 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.61 6.70 -51.92 -0.35 0.26 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.54 6.30 -51.93 -0.33 0.22 16 39 H 0.06 0.76 5.00 -51.93 -0.26 0.50 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.03 0.45 7.76 -51.93 -0.40 0.04 16 42 H 0.07 1.07 8.12 -51.93 -0.42 0.65 16 43 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 44 H 0.08 1.43 6.02 -51.93 -0.31 1.12 16 45 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 46 H 0.09 1.99 6.55 -51.93 -0.34 1.65 16 LS Contribution 330.52 15.07 4.98 4.98 Total: -1.00 -29.92 330.52 -9.46 -39.38 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.08 Total: 3.05 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -1.45 Total: -21.82 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.35 Total: -37.89 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.32 Total: -5.48 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.23 Total: 17.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.92 -9.46 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.639 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds