Wall clock time and date at job start Tue Mar 31 2020 02:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48494 * 109.46989 * 264.93965 * 3 2 1 5 5 H 1.48495 * 109.46957 * 24.94058 * 3 2 1 6 6 H 1.48499 * 109.46841 * 144.94260 * 3 2 1 7 7 C 1.37877 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99762 * 4.84149 * 7 2 1 9 9 C 1.50699 * 119.99617 * 184.83671 * 7 2 1 10 10 C 1.52998 * 115.56089 * 88.99885 * 9 7 2 11 11 N 1.46901 * 109.47689 * 77.40158 * 10 9 7 12 12 C 1.46840 * 110.99640 * 46.42389 * 11 10 9 13 13 C 1.53052 * 109.51242 * 185.86287 * 12 11 10 14 14 C 1.53062 * 109.26435 * 300.88039 * 13 12 11 15 15 C 1.53027 * 109.50549 * 177.54129 * 14 13 12 16 16 C 1.53185 * 109.18031 * 177.58659 * 15 14 13 17 17 C 1.53175 * 109.03430 * 303.10717 * 16 15 14 18 18 C 1.53098 * 109.16915 * 57.00904 * 17 16 15 19 19 O 1.42856 * 109.51543 * 297.66298 * 14 13 12 20 20 C 1.53063 * 109.25148 * 57.62222 * 14 13 12 21 21 C 1.46834 * 111.00159 * 170.67975 * 11 10 9 22 22 C 1.53001 * 117.49927 * 234.68071 * 9 7 2 23 23 C 1.52990 * 60.00120 * 107.49243 * 22 9 7 24 24 H 0.97001 * 120.00032 * 4.99786 * 1 2 3 25 25 H 1.09000 * 109.47053 * 197.40265 * 10 9 7 26 26 H 1.09000 * 109.47095 * 317.40061 * 10 9 7 27 27 H 1.09008 * 109.46684 * 305.87499 * 12 11 10 28 28 H 1.09000 * 109.46741 * 65.84684 * 12 11 10 29 29 H 1.09008 * 109.50511 * 180.94534 * 13 12 11 30 30 H 1.09002 * 109.50939 * 60.81795 * 13 12 11 31 31 H 1.09006 * 109.51698 * 297.49182 * 15 14 13 32 32 H 1.08995 * 109.52112 * 57.67466 * 15 14 13 33 33 H 1.08991 * 109.54693 * 183.23621 * 16 15 14 34 34 H 1.09008 * 109.61575 * 63.01706 * 16 15 14 35 35 H 1.09000 * 109.52206 * 297.10577 * 17 16 15 36 36 H 1.09000 * 109.57593 * 176.94223 * 17 16 15 37 37 H 1.09004 * 109.48391 * 182.36623 * 18 17 16 38 38 H 1.08998 * 109.48186 * 62.32790 * 18 17 16 39 39 H 1.08999 * 109.50944 * 182.44920 * 20 14 13 40 40 H 1.09000 * 109.50641 * 62.32048 * 20 14 13 41 41 H 1.09001 * 109.46322 * 294.16125 * 21 11 10 42 42 H 1.09000 * 109.46573 * 54.12931 * 21 11 10 43 43 H 1.09002 * 117.50040 * 0.02562 * 22 9 7 44 44 H 1.09001 * 117.50150 * 214.98715 * 22 9 7 45 45 H 1.08999 * 117.50153 * 107.48911 * 23 22 9 46 46 H 1.09006 * 117.50296 * 252.51500 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6036 1.9847 -1.3946 5 1 1.3972 2.6811 0.5904 6 1 3.4892 1.4734 0.8042 7 6 2.0045 -1.1941 0.0005 8 1 1.4674 -2.1277 -0.0780 9 6 3.5075 -1.1963 0.1106 10 6 4.0651 -1.2307 1.5349 11 7 3.9627 -2.5957 2.0681 12 6 4.4401 -3.5802 1.0889 13 6 4.1839 -4.9933 1.6182 14 6 4.9146 -5.1736 2.9510 15 6 4.6125 -6.5635 3.5154 16 6 5.3947 -6.7586 4.8180 17 6 6.8871 -6.5542 4.5399 18 6 7.1003 -5.1628 3.9378 19 8 6.3218 -5.0368 2.7460 20 6 4.4353 -4.1062 3.9377 21 6 4.6840 -2.7188 3.3411 22 6 4.2942 -1.9350 -0.9740 23 6 4.2938 -0.4056 -0.9370 24 1 -0.4850 0.8369 -0.0732 25 1 5.1106 -0.9226 1.5234 26 1 3.4928 -0.5504 2.1657 27 1 3.9085 -3.4432 0.1472 28 1 5.5089 -3.4416 0.9259 29 1 4.5536 -5.7240 0.8987 30 1 3.1138 -5.1377 1.7674 31 1 3.5446 -6.6511 3.7153 32 1 4.9124 -7.3229 2.7933 33 1 5.2290 -7.7677 5.1952 34 1 5.0590 -6.0328 5.5587 35 1 7.2339 -7.3120 3.8375 36 1 7.4469 -6.6375 5.4715 37 1 8.1552 -5.0277 3.6989 38 1 6.7901 -4.4043 4.6565 39 1 4.9844 -4.2034 4.8743 40 1 3.3694 -4.2360 4.1250 41 1 5.7517 -2.5840 3.1681 42 1 4.3295 -1.9564 4.0348 43 1 3.7247 -2.4191 -1.7674 44 1 5.2089 -2.4456 -0.6728 45 1 5.2082 0.0903 -0.6114 46 1 3.7239 0.1164 -1.7058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880459098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:50 Heat of formation + Delta-G solvation = -31.748671 kcal Electronic energy + Delta-G solvation = -23737.741348 eV Core-core repulsion = 20627.267896 eV Total energy + Delta-G solvation = -3110.473451 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.54206 -39.70695 -37.16941 -34.57292 -34.19836 -33.70543 -31.71788 -30.02166 -28.03700 -26.54074 -24.89761 -24.81258 -23.29369 -23.09934 -21.10259 -20.82315 -19.98484 -18.27165 -17.29458 -16.88504 -16.80989 -16.08097 -15.98673 -15.68969 -15.41095 -15.30131 -15.04145 -14.73536 -14.46971 -14.11139 -13.70915 -13.64534 -13.52649 -13.07856 -13.02205 -12.87577 -12.67576 -12.46454 -12.29071 -12.13536 -11.91112 -11.84294 -11.79116 -11.53816 -11.47333 -11.30499 -10.91805 -10.72775 -10.32888 -10.20404 -10.14142 -8.95512 -8.21950 -6.25919 1.36867 1.40401 1.52097 2.41701 2.83715 2.94998 3.11892 3.46483 3.72486 3.81132 3.87822 3.98285 4.05850 4.12599 4.26440 4.27375 4.36209 4.41841 4.46216 4.50366 4.55916 4.56325 4.65759 4.68646 4.78534 4.80360 4.82537 4.91677 4.96055 4.98358 5.00934 5.04600 5.13087 5.16169 5.17391 5.19296 5.36265 5.38974 5.44029 5.47272 5.55209 5.76937 6.29674 6.43955 6.44821 6.47219 6.80701 7.41190 8.94113 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.032093 B = 0.004716 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.256341 B = 5935.894516 C = 6056.888260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.018 3.982 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.303 1.303 6 H -0.243 1.243 7 C -0.461 4.461 8 H 0.032 0.968 9 C -0.018 4.018 10 C 0.106 3.894 11 N -0.538 5.538 12 C 0.054 3.946 13 C -0.101 4.101 14 C 0.122 3.878 15 C -0.139 4.139 16 C -0.122 4.122 17 C -0.149 4.149 18 C 0.049 3.951 19 O -0.389 6.389 20 C -0.132 4.132 21 C 0.059 3.941 22 C -0.163 4.163 23 C -0.204 4.204 24 H 0.263 0.737 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.030 0.970 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.102 0.898 45 H 0.095 0.905 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.867 -11.807 9.937 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.195 1.195 5 H -0.231 1.231 6 H -0.166 1.166 7 C -0.499 4.499 8 H 0.050 0.950 9 C -0.019 4.019 10 C -0.022 4.022 11 N -0.262 5.262 12 C -0.073 4.073 13 C -0.139 4.139 14 C 0.083 3.917 15 C -0.177 4.177 16 C -0.159 4.159 17 C -0.187 4.187 18 C -0.027 4.027 19 O -0.309 6.309 20 C -0.170 4.170 21 C -0.069 4.069 22 C -0.200 4.200 23 C -0.241 4.241 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.306 -11.768 9.926 21.709 hybrid contribution 0.311 1.149 -0.206 1.208 sum 15.617 -10.619 9.720 21.240 Atomic orbital electron populations 1.70061 1.08178 1.28029 1.53039 1.25749 0.95161 1.02517 0.94387 0.85878 0.79320 0.78939 0.79176 1.19464 1.23069 1.16618 1.20322 0.89099 0.92544 1.47960 0.95023 1.19352 0.92289 1.02034 0.88205 1.21609 0.95962 0.89570 0.95043 1.61744 1.56474 1.03852 1.04163 1.22455 0.97010 0.91275 0.96537 1.21627 0.99947 0.96435 0.95877 1.21404 0.81123 0.94143 0.95002 1.22115 1.01252 0.96065 0.98246 1.21626 0.94812 1.02776 0.96672 1.22137 0.97020 0.97512 1.01990 1.22737 0.95900 0.96602 0.87479 1.87939 1.17210 1.93057 1.32705 1.22140 1.02375 0.93681 0.98774 1.22014 0.95438 0.97975 0.91435 1.23054 1.01774 0.92982 1.02210 1.23165 1.01950 0.95279 1.03745 0.92846 0.96016 0.93147 0.89710 0.95347 0.90490 0.90814 0.90686 0.91271 0.90378 0.91348 0.91520 0.89309 0.88421 0.92862 0.89379 0.90925 0.95216 0.91544 0.89997 0.87998 0.88648 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.95 21.45 0.30 -60.14 16 2 C 0.02 1.06 5.47 84.65 0.46 1.53 16 3 Si 0.94 45.53 24.88 68.60 1.71 47.24 16 4 H -0.27 -12.45 6.93 99.48 0.69 -11.76 16 5 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 6 H -0.24 -10.85 6.70 99.48 0.67 -10.18 16 7 C -0.46 -26.41 9.45 25.60 0.24 -26.17 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 9 C -0.02 -0.81 0.50 -52.93 -0.03 -0.84 16 10 C 0.11 4.46 5.00 86.30 0.43 4.90 16 11 N -0.54 -20.55 4.80 -896.34 -4.30 -24.85 16 12 C 0.05 1.91 3.75 86.33 0.32 2.23 16 13 C -0.10 -2.99 5.11 30.63 0.16 -2.84 16 14 C 0.12 3.06 0.68 -10.74 -0.01 3.05 16 15 C -0.14 -2.78 4.92 30.67 0.15 -2.63 16 16 C -0.12 -1.90 5.72 30.71 0.18 -1.72 16 17 C -0.15 -2.21 6.13 30.69 0.19 -2.02 16 18 C 0.05 0.92 6.52 72.01 0.47 1.39 16 19 O -0.39 -9.98 9.09 -148.98 -1.35 -11.33 16 20 C -0.13 -3.38 4.21 30.63 0.13 -3.25 16 21 C 0.06 1.84 5.30 86.33 0.46 2.30 16 22 C -0.16 -6.44 7.11 30.59 0.22 -6.22 16 23 C -0.20 -8.40 7.32 30.59 0.22 -8.18 16 24 H 0.26 15.72 8.32 -92.71 -0.77 14.95 16 25 H 0.02 0.84 7.92 -2.39 -0.02 0.82 16 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.08 3.33 4.49 -2.38 -0.01 3.31 16 28 H 0.03 0.99 6.96 -2.39 -0.02 0.97 16 29 H 0.08 2.08 8.14 -2.38 -0.02 2.07 16 30 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.04 6.70 -2.38 -0.02 1.03 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 0.96 6.30 -2.39 -0.02 0.95 16 39 H 0.09 1.84 5.00 -2.39 -0.01 1.83 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.03 0.91 7.76 -2.39 -0.02 0.90 16 42 H 0.07 2.04 8.12 -2.39 -0.02 2.02 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.10 3.53 6.02 -2.39 -0.01 3.52 16 45 H 0.10 3.46 8.10 -2.39 -0.02 3.44 16 46 H 0.08 3.31 6.55 -2.38 -0.02 3.29 16 Total: -1.00 -66.12 330.52 0.82 -65.29 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.88 Total: 22.27 kcal Atomic # 6 Polarization: -42.07 SS G_CDS: 3.59 Total: -38.48 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -4.00 Total: -84.99 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -1.35 Total: -11.33 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.71 Total: 47.24 kcal Total: -66.12 0.82 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880459098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.544 kcal (2) G-P(sol) polarization free energy of solvation -66.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds