Wall clock time and date at job start Tue Mar 31 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.47281 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.47213 * 299.99645 * 3 2 1 6 6 H 1.48508 * 109.47204 * 59.99598 * 3 2 1 7 7 C 1.37874 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46939 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47007 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47430 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47454 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00160 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.46500 * 119.99870 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.47844 * 34.98575 * 16 15 13 18 18 C 1.52958 * 109.47152 * 274.97303 * 16 15 13 19 19 C 1.52958 * 109.92616 * 177.07646 * 18 16 15 20 20 C 1.53181 * 109.44211 * 62.80212 * 19 18 16 21 21 C 1.53150 * 108.98447 * 303.61766 * 20 19 18 22 22 C 1.52843 * 117.68115 * 268.45145 * 21 20 19 23 23 C 1.52808 * 117.75302 * 199.56934 * 21 20 19 24 24 C 1.53152 * 115.00722 * 53.87751 * 21 20 19 25 25 H 0.97003 * 119.99681 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47281 * 59.99262 * 9 7 2 27 27 H 1.09002 * 109.46560 * 299.99442 * 9 7 2 28 28 H 1.09001 * 109.47115 * 59.99996 * 10 9 7 29 29 H 1.08996 * 109.46912 * 299.99892 * 10 9 7 30 30 H 1.09002 * 109.47418 * 59.99684 * 11 10 9 31 31 H 1.09006 * 109.47326 * 299.99987 * 11 10 9 32 32 H 1.09005 * 109.46466 * 59.99925 * 12 11 10 33 33 H 1.08996 * 109.46919 * 300.00531 * 12 11 10 34 34 H 0.96996 * 119.99930 * 0.02562 * 15 13 12 35 35 H 1.09003 * 109.40741 * 297.13157 * 18 16 15 36 36 H 1.09004 * 109.40848 * 56.91289 * 18 16 15 37 37 H 1.09005 * 109.37893 * 302.87643 * 19 18 16 38 38 H 1.08993 * 109.57794 * 182.85590 * 19 18 16 39 39 H 1.09002 * 109.56883 * 183.73603 * 20 19 18 40 40 H 1.08994 * 109.56650 * 63.49918 * 20 19 18 41 41 H 1.09004 * 117.50365 * 359.72550 * 22 21 20 42 42 H 1.08996 * 117.51028 * 144.77606 * 22 21 20 43 43 H 1.09004 * 117.50235 * 215.11158 * 23 21 20 44 44 H 1.09004 * 117.50100 * 0.12028 * 23 21 20 45 45 H 1.09001 * 109.57084 * 65.87489 * 24 21 20 46 46 H 1.08997 * 109.56966 * 186.23841 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4745 -6.1500 0.0005 13 6 1.7211 -7.4550 0.0018 14 8 0.5082 -7.4551 0.0026 15 7 2.3950 -8.6223 0.0020 16 6 1.6624 -9.8910 0.0027 17 1 0.7515 -9.7850 -0.5862 18 6 1.2996 -10.2695 1.4396 19 6 0.4715 -11.5555 1.4467 20 6 1.3102 -12.7052 0.8798 21 6 1.7959 -12.3236 -0.5216 22 6 0.9238 -12.7278 -1.7099 23 6 2.2472 -13.4506 -1.4496 24 6 2.5404 -10.9880 -0.6074 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6241 -2.5566 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8719 -3.6043 -0.8894 30 1 0.8533 -5.0451 -0.8885 31 1 0.8540 -5.0445 0.8914 32 1 3.1018 -6.0921 0.8901 33 1 3.1006 -6.0922 -0.8898 34 1 3.3649 -8.6223 0.0017 35 1 2.2125 -10.4253 2.0146 36 1 0.7211 -9.4637 1.8914 37 1 -0.4175 -11.4165 0.8314 38 1 0.1734 -11.7923 2.4679 39 1 0.7012 -13.6074 0.8221 40 1 2.1683 -12.8848 1.5273 41 1 0.0031 -13.2711 -1.4968 42 1 0.8814 -12.0452 -2.5586 43 1 3.0756 -13.2435 -2.1271 44 1 2.1977 -14.4695 -1.0652 45 1 3.4771 -11.0558 -0.0542 46 1 2.7471 -10.7517 -1.6512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888693763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:56 Heat of formation + Delta-G solvation = -80.386279 kcal Electronic energy + Delta-G solvation = -21289.748525 eV Core-core repulsion = 18177.165988 eV Total energy + Delta-G solvation = -3112.582536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.19423 -39.88972 -36.84092 -36.33142 -34.63006 -34.33144 -31.80038 -30.50775 -28.41261 -27.38926 -24.55288 -23.42614 -23.27395 -22.23659 -21.64028 -21.29689 -19.52735 -18.42754 -17.86260 -17.18278 -16.85630 -16.50216 -16.16424 -15.90500 -15.58527 -15.03856 -14.77938 -14.63323 -14.50802 -13.99825 -13.72866 -13.59904 -13.48863 -13.26334 -12.89127 -12.82564 -12.44203 -12.31184 -12.18160 -12.15265 -12.13455 -12.08383 -11.82168 -11.60969 -11.38024 -11.35138 -11.13929 -10.95359 -10.67464 -10.56078 -10.49181 -10.00425 -8.18989 -6.31212 1.40207 1.41352 1.54881 1.68027 2.19371 2.41915 2.85978 3.13651 3.67723 3.70865 3.86231 3.88027 4.02375 4.08081 4.13755 4.15998 4.17677 4.32020 4.39691 4.48079 4.64434 4.67809 4.69475 4.81872 4.85016 4.87606 4.89081 4.98188 5.02368 5.06142 5.08790 5.16178 5.19442 5.28687 5.29033 5.33497 5.36496 5.39815 5.42632 5.56196 5.61121 5.77885 5.87939 6.25083 6.61113 6.87525 7.32907 7.38433 8.93536 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.048446 B = 0.002291 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.825668 B =12221.224775 C =12357.109834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.510 3.490 14 O -0.589 6.589 15 N -0.716 5.716 16 C 0.148 3.852 17 H 0.055 0.945 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.076 4.076 21 C -0.128 4.128 22 C -0.187 4.187 23 C -0.160 4.160 24 C -0.078 4.078 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.049 0.951 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.092 0.908 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -30.342 0.104 31.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.020 4.020 10 C -0.133 4.133 11 C -0.134 4.134 12 C -0.168 4.168 13 C 0.299 3.701 14 O -0.469 6.469 15 N -0.368 5.368 16 C 0.043 3.957 17 H 0.073 0.927 18 C -0.164 4.164 19 C -0.151 4.151 20 C -0.113 4.113 21 C -0.129 4.129 22 C -0.224 4.224 23 C -0.196 4.196 24 C -0.116 4.116 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.982 -30.243 0.098 31.549 hybrid contribution -0.168 1.226 -0.078 1.240 sum 8.814 -29.017 0.020 30.327 Atomic orbital electron populations 1.70147 1.08092 1.27685 1.51986 1.26122 0.95815 1.03831 0.94829 0.85312 0.79192 0.78317 0.77676 1.18034 1.20462 1.20474 1.21781 0.93757 0.92171 1.50056 0.91520 1.19071 0.94721 0.93896 0.94268 1.21445 0.97789 0.92692 1.01336 1.21240 0.97522 0.93769 1.00881 1.21675 0.98899 0.89533 1.06668 1.21208 0.87802 0.86822 0.74314 1.90694 1.16567 1.88385 1.51248 1.46001 1.11039 1.04729 1.75040 1.20891 0.95419 0.82751 0.96590 0.92660 1.21834 1.00749 0.97463 0.96312 1.21454 0.98097 0.94146 1.01378 1.21143 0.99611 0.97318 0.93273 1.21425 1.03345 0.95494 0.92617 1.23089 0.95568 1.04170 0.99617 1.23050 0.97735 0.96889 1.01973 1.21328 0.98021 0.90842 1.01376 0.92861 0.99779 0.99767 0.92036 0.92028 0.94033 0.94027 0.86355 0.86346 0.74569 0.90244 0.94452 0.93192 0.90819 0.90958 0.90260 0.88714 0.89537 0.88146 0.87736 0.88976 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.71 13.29 21.45 0.28 -59.43 16 2 C -0.01 -0.54 5.46 84.65 0.46 -0.07 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.54 -31.64 9.11 25.60 0.23 -31.41 16 8 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 9 C 0.02 0.98 4.97 29.85 0.15 1.13 16 10 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 11 C -0.10 -3.56 4.50 30.59 0.14 -3.42 16 12 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 13 C 0.51 14.17 7.79 87.65 0.68 14.85 16 14 O -0.59 -22.71 15.65 -3.04 -0.05 -22.76 16 15 N -0.72 -13.42 5.08 -442.32 -2.25 -15.67 16 16 C 0.15 2.79 2.46 45.04 0.11 2.90 16 17 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 18 C -0.12 -2.30 5.39 30.57 0.16 -2.13 16 19 C -0.11 -1.74 5.94 30.64 0.18 -1.56 16 20 C -0.08 -0.87 5.67 30.71 0.17 -0.69 16 21 C -0.13 -1.55 1.98 -52.20 -0.10 -1.66 16 22 C -0.19 -2.45 9.93 30.55 0.30 -2.15 16 23 C -0.16 -1.58 9.99 30.54 0.31 -1.27 16 24 C -0.08 -0.97 5.14 30.71 0.16 -0.81 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 31 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.42 4.66 8.60 -92.71 -0.80 3.87 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 40 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 Total: -1.00 -76.00 368.95 3.43 -72.57 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.12 Total: 11.19 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 3.29 Total: -33.13 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.96 Total: -75.10 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.00 3.43 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888693763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.820 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds