Wall clock time and date at job start Tue Mar 31 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47004 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99538 * 180.02562 * 13 12 11 16 16 C 1.47062 * 136.06053 * 359.62174 * 15 13 12 17 17 C 1.53235 * 88.08701 * 207.20758 * 16 15 13 18 18 C 1.47068 * 136.05588 * 180.02562 * 15 13 12 19 19 H 1.09001 * 113.46490 * 267.61834 * 18 15 13 20 20 C 1.53001 * 113.46902 * 37.99502 * 18 15 13 21 21 C 1.54269 * 110.03293 * 297.91017 * 20 18 15 22 22 C 1.54960 * 104.15938 * 217.13562 * 21 20 18 23 23 C 1.54889 * 102.78128 * 37.89118 * 22 21 20 24 24 C 1.53874 * 110.03284 * 180.69700 * 20 18 15 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.09003 * 109.46690 * 300.00171 * 12 11 10 33 33 H 1.08993 * 109.47209 * 60.00145 * 12 11 10 34 34 H 1.08997 * 113.47012 * 321.94186 * 16 15 13 35 35 H 1.09001 * 113.46634 * 92.38240 * 16 15 13 36 36 H 1.08997 * 114.32978 * 220.46953 * 17 16 15 37 37 H 1.09008 * 114.20029 * 87.72861 * 17 16 15 38 38 H 1.08995 * 110.01634 * 59.30390 * 20 18 15 39 39 H 1.08997 * 110.48738 * 335.78147 * 21 20 18 40 40 H 1.08997 * 110.48264 * 98.42954 * 21 20 18 41 41 H 1.09002 * 110.72496 * 279.57606 * 22 21 20 42 42 H 1.08994 * 110.92520 * 156.30028 * 22 21 20 43 43 H 1.08995 * 110.48787 * 203.41204 * 23 22 21 44 44 H 1.09000 * 110.48648 * 80.75712 * 23 22 21 45 45 H 1.09008 * 110.02793 * 238.57557 * 24 20 18 46 46 H 1.09004 * 110.03486 * 359.94655 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 6 1.7213 -7.4549 0.0391 14 8 0.5085 -7.4551 0.0391 15 7 2.3953 -8.6221 0.0461 16 6 3.8086 -9.0288 0.0427 17 6 3.3793 -10.3298 -0.6438 18 6 2.0411 -10.0494 0.0534 19 1 1.9757 -10.4753 1.0546 20 6 0.8219 -10.3790 -0.8103 21 6 -0.4222 -9.6432 -0.2710 22 6 -1.5789 -10.6537 -0.4762 23 6 -0.9101 -12.0115 -0.1472 24 6 0.5118 -11.8842 -0.7319 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.1015 -6.0971 -0.8579 33 1 3.1014 -6.0871 0.9220 34 1 4.4404 -8.3979 -0.5824 35 1 4.2191 -9.1800 1.0411 36 1 3.8942 -11.2196 -0.2819 37 1 3.3378 -10.2685 -1.7314 38 1 1.0079 -10.0894 -1.8444 39 1 -0.3003 -9.4128 0.7873 40 1 -0.6042 -8.7328 -0.8421 41 1 -1.9286 -10.6355 -1.5084 42 1 -2.3997 -10.4508 0.2117 43 1 -1.4484 -12.8283 -0.6278 44 1 -0.8668 -12.1641 0.9312 45 1 0.5467 -12.3249 -1.7284 46 1 1.2305 -12.3800 -0.0794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889410477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:56 Heat of formation + Delta-G solvation = -37.831965 kcal Electronic energy + Delta-G solvation = -21882.105201 eV Core-core repulsion = 18771.367958 eV Total energy + Delta-G solvation = -3110.737243 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92196 -38.24401 -37.34153 -35.03116 -32.81384 -30.80854 -29.50023 -29.17314 -28.48323 -25.28418 -24.61724 -22.84787 -21.57046 -20.69138 -20.22580 -20.05558 -18.97681 -17.01771 -16.61514 -16.20405 -15.98096 -15.37697 -15.29147 -14.46519 -13.93154 -13.69003 -13.47982 -13.36036 -13.04493 -12.80445 -12.64850 -12.59503 -12.30733 -12.18169 -11.82745 -11.31219 -11.25792 -11.14454 -10.99342 -10.92721 -10.73614 -10.58061 -10.57060 -10.49182 -10.29004 -10.07968 -9.72288 -9.66648 -9.24095 -8.80423 -8.44437 -8.25666 -6.29083 -3.97566 2.66291 2.78470 3.46834 3.49447 3.68240 4.01617 4.37643 4.45957 4.51611 4.55469 4.60782 4.75501 4.90177 5.03280 5.12006 5.18463 5.26056 5.34459 5.35736 5.37433 5.43830 5.48329 5.49920 5.53215 5.63152 5.71298 5.73157 5.80286 5.86963 5.97804 6.06898 6.10339 6.12321 6.24980 6.42765 6.45989 6.56750 6.74103 6.90502 7.06803 7.51840 7.64950 7.68279 8.28915 8.31176 8.54039 8.96278 9.75202 11.11707 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002839 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.998388 B = 9858.868105 C =10645.398915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.007 3.993 10 C -0.103 4.103 11 C -0.103 4.103 12 C -0.131 4.131 13 C 0.537 3.463 14 O -0.523 6.523 15 N -0.649 5.649 16 C 0.099 3.901 17 C -0.153 4.153 18 C 0.138 3.862 19 H 0.088 0.912 20 C -0.096 4.096 21 C -0.103 4.103 22 C -0.133 4.133 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.269 0.731 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.659 -27.509 -0.801 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.640 4.640 8 H 0.066 0.934 9 C -0.030 4.030 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.171 4.171 13 C 0.329 3.671 14 O -0.399 6.399 15 N -0.387 5.387 16 C -0.025 4.025 17 C -0.191 4.191 18 C 0.035 3.965 19 H 0.106 0.894 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.685 -25.611 -0.794 26.246 hybrid contribution 0.404 -1.735 0.102 1.784 sum 6.089 -27.346 -0.692 28.024 Atomic orbital electron populations 1.70767 1.06889 1.30666 1.46790 1.25863 0.96604 1.02738 0.93940 0.83550 0.74870 0.75413 0.76422 1.20787 1.21505 1.21500 1.22086 0.94204 0.92208 1.55520 0.93449 1.19219 0.94690 0.93089 0.95983 1.21511 0.98791 0.93501 1.00243 1.21463 0.97067 0.92756 1.02810 1.21716 0.99926 0.91744 1.03704 1.20625 0.87953 0.83686 0.74872 1.90714 1.13581 1.86375 1.49261 1.49911 1.08845 1.05111 1.74785 1.22850 0.84427 0.94476 1.00704 1.23473 0.96591 0.97865 1.01202 1.22776 0.94599 0.80477 0.98657 0.89399 1.22004 0.95091 0.95270 0.99179 1.22642 0.91786 0.97592 1.01969 1.22640 0.98411 0.95037 1.01004 1.22363 0.95617 0.97730 1.00498 1.22122 0.96980 0.95277 1.00930 0.92039 0.97526 0.97516 0.93360 0.93374 0.91888 0.91864 0.89496 0.89470 0.90251 0.89871 0.89459 0.88748 0.91018 0.91772 0.89361 0.92020 0.91943 0.92078 0.91916 0.91850 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.20 13.65 55.43 0.76 -28.44 16 2 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 3 Si 1.07 26.03 29.90 -169.99 -5.08 20.95 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.88 9.11 -34.44 -0.31 -18.19 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.10 -2.20 5.15 -26.73 -0.14 -2.34 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.13 -1.87 5.53 -27.88 -0.15 -2.03 16 13 C 0.54 7.87 7.98 -10.99 -0.09 7.78 16 14 O -0.52 -9.28 11.50 5.55 0.06 -9.21 16 15 N -0.65 -7.23 3.57 -177.65 -0.63 -7.86 16 16 C 0.10 0.71 8.40 -8.66 -0.07 0.64 16 17 C -0.15 -0.94 8.01 -26.36 -0.21 -1.15 16 18 C 0.14 1.24 3.03 -72.42 -0.22 1.02 16 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 20 C -0.10 -0.96 2.81 -89.50 -0.25 -1.21 16 21 C -0.10 -1.29 4.24 -25.03 -0.11 -1.40 16 22 C -0.13 -1.39 6.91 -24.70 -0.17 -1.57 16 23 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 24 C -0.11 -0.89 6.45 -25.61 -0.17 -1.06 16 25 H 0.27 8.60 7.22 -40.82 -0.29 8.31 16 26 H 0.01 0.18 8.01 -51.92 -0.42 -0.23 16 27 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.60 8.03 -51.92 -0.42 0.18 16 38 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 39 H 0.06 0.92 7.21 -51.93 -0.37 0.54 16 40 H 0.09 1.38 6.12 -51.93 -0.32 1.06 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.06 0.41 7.67 -51.93 -0.40 0.01 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -33.93 358.72 -10.48 -44.41 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.59 Total: -2.84 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -2.40 Total: -22.40 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.12 Total: -36.30 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.06 Total: -9.21 kcal Atomic # 14 Polarization: 26.03 SS G_CDS: -5.08 Total: 20.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.93 -10.48 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889410477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.573 kcal (2) G-P(sol) polarization free energy of solvation -33.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds