Wall clock time and date at job start Tue Mar 31 2020 01:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47303 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47303 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47004 * 180.02562 * 12 11 10 14 14 O 1.21283 * 120.00472 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99538 * 180.02562 * 13 12 11 16 16 C 1.47062 * 136.06053 * 359.62174 * 15 13 12 17 17 C 1.53235 * 88.08701 * 207.20758 * 16 15 13 18 18 C 1.47068 * 136.05588 * 180.02562 * 15 13 12 19 19 H 1.09001 * 113.46490 * 267.61834 * 18 15 13 20 20 C 1.53001 * 113.46902 * 37.99502 * 18 15 13 21 21 C 1.54269 * 110.03293 * 297.91017 * 20 18 15 22 22 C 1.54960 * 104.15938 * 217.13562 * 21 20 18 23 23 C 1.54889 * 102.78128 * 37.89118 * 22 21 20 24 24 C 1.53874 * 110.03284 * 180.69700 * 20 18 15 25 25 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 27 27 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 28 28 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 29 29 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 30 30 H 1.09000 * 109.47250 * 300.00684 * 11 10 9 31 31 H 1.09007 * 109.46897 * 59.99806 * 11 10 9 32 32 H 1.09003 * 109.46690 * 300.00171 * 12 11 10 33 33 H 1.08993 * 109.47209 * 60.00145 * 12 11 10 34 34 H 1.08997 * 113.47012 * 321.94186 * 16 15 13 35 35 H 1.09001 * 113.46634 * 92.38240 * 16 15 13 36 36 H 1.08997 * 114.32978 * 220.46953 * 17 16 15 37 37 H 1.09008 * 114.20029 * 87.72861 * 17 16 15 38 38 H 1.08995 * 110.01634 * 59.30390 * 20 18 15 39 39 H 1.08997 * 110.48738 * 335.78147 * 21 20 18 40 40 H 1.08997 * 110.48264 * 98.42954 * 21 20 18 41 41 H 1.09002 * 110.72496 * 279.57606 * 22 21 20 42 42 H 1.08994 * 110.92520 * 156.30028 * 22 21 20 43 43 H 1.08995 * 110.48787 * 203.41204 * 23 22 21 44 44 H 1.09000 * 110.48648 * 80.75712 * 23 22 21 45 45 H 1.09008 * 110.02793 * 238.57557 * 24 20 18 46 46 H 1.09004 * 110.03486 * 359.94655 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4806 -4.9870 0.0257 12 6 2.4748 -6.1499 0.0324 13 6 1.7213 -7.4549 0.0391 14 8 0.5085 -7.4551 0.0391 15 7 2.3953 -8.6221 0.0461 16 6 3.8086 -9.0288 0.0427 17 6 3.3793 -10.3298 -0.6438 18 6 2.0411 -10.0494 0.0534 19 1 1.9757 -10.4753 1.0546 20 6 0.8219 -10.3790 -0.8103 21 6 -0.4222 -9.6432 -0.2710 22 6 -1.5789 -10.6537 -0.4762 23 6 -0.9101 -12.0115 -0.1472 24 6 0.5118 -11.8842 -0.7319 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6248 -2.5524 0.9029 27 1 0.6241 -2.5613 -0.8770 28 1 2.8721 -3.6088 -0.8720 29 1 2.8721 -3.5996 0.9080 30 1 0.8541 -5.0399 0.9162 31 1 0.8536 -5.0496 -0.8638 32 1 3.1015 -6.0971 -0.8579 33 1 3.1014 -6.0871 0.9220 34 1 4.4404 -8.3979 -0.5824 35 1 4.2191 -9.1800 1.0411 36 1 3.8942 -11.2196 -0.2819 37 1 3.3378 -10.2685 -1.7314 38 1 1.0079 -10.0894 -1.8444 39 1 -0.3003 -9.4128 0.7873 40 1 -0.6042 -8.7328 -0.8421 41 1 -1.9286 -10.6355 -1.5084 42 1 -2.3997 -10.4508 0.2117 43 1 -1.4484 -12.8283 -0.6278 44 1 -0.8668 -12.1641 0.9312 45 1 0.5467 -12.3249 -1.7284 46 1 1.2305 -12.3800 -0.0794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889410477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:56 Heat of formation + Delta-G solvation = -57.104160 kcal Electronic energy + Delta-G solvation = -21882.940906 eV Core-core repulsion = 18771.367958 eV Total energy + Delta-G solvation = -3111.572948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74014 -39.29779 -38.13392 -36.88197 -34.79859 -32.03523 -30.67038 -30.11293 -29.41905 -27.02456 -25.41252 -24.47066 -22.79568 -21.85417 -21.51879 -20.84671 -19.83217 -18.86941 -18.01851 -17.13872 -16.89152 -16.46414 -16.31473 -15.64469 -15.47811 -15.19444 -15.00683 -14.27938 -14.20762 -14.17507 -13.88908 -13.60511 -13.32021 -13.18863 -12.91195 -12.69589 -12.49540 -12.35867 -12.24801 -12.05470 -11.98755 -11.96442 -11.81237 -11.60466 -11.54830 -11.49668 -11.36446 -11.02518 -10.68848 -10.56611 -10.34755 -9.66000 -8.71899 -6.42567 1.51129 1.61049 1.64646 1.80209 1.88129 2.56868 3.13794 3.37580 3.58964 3.72993 3.73625 3.77082 3.91548 3.99210 4.16282 4.25136 4.36814 4.41659 4.49025 4.52697 4.55711 4.59676 4.67063 4.67946 4.71661 4.74455 4.81486 4.83429 4.99574 4.99984 5.00418 5.07142 5.10882 5.15232 5.17238 5.24291 5.37890 5.44109 5.44958 5.50334 5.52288 5.52927 5.97604 6.16064 6.53546 6.78383 7.24638 7.41892 8.68470 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.030728 B = 0.002839 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.998388 B = 9858.868105 C =10645.398915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.122 2.878 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.619 4.619 8 H 0.057 0.943 9 C 0.004 3.996 10 C -0.088 4.088 11 C -0.092 4.092 12 C -0.120 4.120 13 C 0.527 3.473 14 O -0.570 6.570 15 N -0.655 5.655 16 C 0.095 3.905 17 C -0.132 4.132 18 C 0.127 3.873 19 H 0.098 0.902 20 C -0.094 4.094 21 C -0.100 4.100 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.107 4.107 25 H 0.252 0.748 26 H -0.019 1.019 27 H -0.019 1.019 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 -29.486 -0.805 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.942 3.058 4 H -0.210 1.210 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.657 4.657 8 H 0.075 0.925 9 C -0.033 4.033 10 C -0.126 4.126 11 C -0.130 4.130 12 C -0.159 4.159 13 C 0.319 3.681 14 O -0.450 6.450 15 N -0.390 5.390 16 C -0.027 4.027 17 C -0.169 4.169 18 C 0.025 3.975 19 H 0.115 0.885 20 C -0.113 4.113 21 C -0.138 4.138 22 C -0.174 4.174 23 C -0.158 4.158 24 C -0.145 4.145 25 H 0.061 0.939 26 H -0.001 1.001 27 H 0.000 1.000 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.162 -27.656 -0.800 29.145 hybrid contribution -0.709 -1.163 0.108 1.366 sum 8.453 -28.819 -0.692 30.041 Atomic orbital electron populations 1.70919 1.08173 1.29690 1.49023 1.27651 0.96601 1.07354 0.92631 0.82896 0.74067 0.70539 0.78273 1.20991 1.19043 1.19007 1.22547 0.94932 0.93289 1.54922 0.92458 1.19219 0.95314 0.95217 0.93550 1.21329 0.97581 0.92479 1.01211 1.21226 0.97422 0.93483 1.00914 1.21547 0.98778 0.89930 1.05691 1.20627 0.87499 0.84940 0.75078 1.90726 1.15453 1.87210 1.51599 1.50028 1.11143 1.05018 1.72823 1.23199 0.82263 0.94878 1.02356 1.23418 0.93970 0.98614 1.00931 1.23088 0.95796 0.79169 0.99465 0.88463 1.21973 0.94257 0.96597 0.98469 1.22444 0.94574 0.96935 0.99799 1.22650 0.97723 0.96166 1.00823 1.22357 0.96031 0.96407 1.00980 1.22100 0.96861 0.93433 1.02114 0.93856 1.00066 1.00048 0.92227 0.92242 0.93890 0.93870 0.87405 0.87359 0.89156 0.87784 0.86072 0.88786 0.92188 0.94167 0.93344 0.92083 0.92691 0.90530 0.91594 0.90690 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.80 13.65 21.45 0.29 -61.50 16 2 C -0.05 -2.80 5.46 84.65 0.46 -2.33 16 3 Si 1.12 51.68 29.90 68.60 2.05 53.73 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.62 -37.14 9.11 25.60 0.23 -36.90 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.00 0.23 4.28 29.85 0.13 0.35 16 10 C -0.09 -3.81 5.15 30.59 0.16 -3.65 16 11 C -0.09 -3.53 4.50 30.59 0.14 -3.39 16 12 C -0.12 -3.33 5.53 29.85 0.16 -3.16 16 13 C 0.53 15.63 7.98 87.66 0.70 16.33 16 14 O -0.57 -21.69 11.50 -3.04 -0.03 -21.72 16 15 N -0.65 -13.66 3.57 -834.35 -2.98 -16.64 16 16 C 0.09 1.02 8.40 83.09 0.70 1.72 16 17 C -0.13 -1.09 8.01 30.83 0.25 -0.84 16 18 C 0.13 2.03 3.03 41.78 0.13 2.15 16 19 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 20 C -0.09 -1.80 2.81 -10.07 -0.03 -1.82 16 21 C -0.10 -2.69 4.24 31.69 0.13 -2.56 16 22 C -0.14 -2.95 6.91 31.91 0.22 -2.73 16 23 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 24 C -0.11 -1.40 6.45 31.32 0.20 -1.19 16 25 H 0.25 16.98 7.22 -92.70 -0.67 16.31 16 26 H -0.02 -1.15 8.01 -2.38 -0.02 -1.17 16 27 H -0.02 -1.14 8.00 -2.39 -0.02 -1.16 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 31 H 0.04 1.79 8.10 -2.38 -0.02 1.77 16 32 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.09 0.85 8.03 -2.38 -0.02 0.83 16 38 H 0.06 1.28 8.02 -2.39 -0.02 1.26 16 39 H 0.04 1.24 7.21 -2.39 -0.02 1.22 16 40 H 0.05 1.68 6.12 -2.39 -0.01 1.67 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 46 H 0.09 0.77 7.67 -2.38 -0.02 0.75 16 Total: -1.00 -78.51 358.72 4.14 -74.37 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.01 Total: 11.41 kcal Atomic # 6 Polarization: -43.45 SS G_CDS: 3.80 Total: -39.65 kcal Atomic # 7 Polarization: -75.46 SS G_CDS: -2.69 Total: -78.15 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.03 Total: -21.72 kcal Atomic # 14 Polarization: 51.68 SS G_CDS: 2.05 Total: 53.73 kcal Total: -78.51 4.14 -74.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889410477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.269 kcal (2) G-P(sol) polarization free energy of solvation -78.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds