Wall clock time and date at job start Tue Mar 31 2020 01:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.50696 * 109.47242 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99909 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00395 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99914 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46704 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.80084 * 305.82263 * 16 15 14 18 18 C 1.54934 * 109.80091 * 66.70271 * 16 15 14 19 19 C 1.52719 * 108.57027 * 176.55960 * 18 16 15 20 20 C 1.50798 * 108.95862 * 57.81346 * 19 18 16 21 21 C 1.31662 * 118.08943 * 255.14352 * 20 19 18 22 22 C 1.50514 * 116.92468 * 359.72586 * 21 20 19 23 23 C 1.49514 * 113.04695 * 84.56572 * 22 21 20 24 24 C 1.51384 * 117.51763 * 280.28798 * 23 22 21 25 25 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 27 27 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 28 28 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 29 29 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 31 31 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 32 32 H 0.96994 * 119.99386 * 359.97438 * 14 12 11 33 33 H 1.09001 * 109.47453 * 299.99744 * 15 14 12 34 34 H 1.08996 * 109.47366 * 60.00397 * 15 14 12 35 35 H 1.09001 * 109.61795 * 296.28004 * 18 16 15 36 36 H 1.08993 * 109.62187 * 56.83431 * 18 16 15 37 37 H 1.08999 * 109.55299 * 297.96944 * 19 18 16 38 38 H 1.08999 * 109.55325 * 177.65620 * 19 18 16 39 39 H 1.08007 * 120.95741 * 75.16265 * 20 19 18 40 40 H 1.07998 * 121.54013 * 179.69841 * 21 20 19 41 41 H 1.08998 * 108.76600 * 323.64529 * 22 21 20 42 42 H 1.09002 * 108.67921 * 205.42226 * 22 21 20 43 43 H 1.09000 * 107.83355 * 158.25203 * 23 22 21 44 44 H 1.09003 * 107.80180 * 42.29398 * 23 22 21 45 45 H 1.08998 * 109.26584 * 313.53080 * 24 23 22 46 46 H 1.09003 * 109.23385 * 194.05674 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6522 -5.9108 -0.0008 14 7 2.0106 -7.4032 0.0015 15 6 2.9627 -8.5166 0.0003 16 6 2.1977 -9.8417 0.0024 17 1 1.4948 -9.8609 0.8352 18 6 1.4335 -10.0086 -1.3350 19 6 0.7514 -11.3750 -1.3382 20 6 -0.1693 -11.4657 -0.1473 21 6 0.2130 -12.1988 0.8774 22 6 1.5446 -12.8907 0.7614 23 6 2.6941 -12.0167 1.1491 24 6 3.1862 -11.0140 0.1273 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6242 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 2.8720 -3.6043 -0.8895 29 1 2.8721 -3.6042 0.8905 30 1 0.8542 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 1.0570 -7.5804 0.0029 33 1 3.5880 -8.4591 -0.8906 34 1 3.5906 -8.4587 0.8893 35 1 0.6822 -9.2243 -1.4277 36 1 2.1347 -9.9477 -2.1673 37 1 1.5057 -12.1594 -1.2768 38 1 0.1743 -11.4925 -2.2553 39 1 -1.1152 -10.9445 -0.1354 40 1 -0.4005 -12.2987 1.7606 41 1 1.6827 -13.2147 -0.2701 42 1 1.5388 -13.7693 1.4065 43 1 3.5311 -12.6634 1.4124 44 1 2.4070 -11.4666 2.0453 45 1 3.2851 -11.5058 -0.8404 46 1 4.1589 -10.6327 0.4379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890045168.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:30 Heat of formation + Delta-G solvation = -61.566054 kcal Electronic energy + Delta-G solvation = -21483.280840 eV Core-core repulsion = 18371.514410 eV Total energy + Delta-G solvation = -3111.766430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.98836 -39.06597 -35.57104 -34.39642 -33.36437 -32.94847 -32.01882 -28.77143 -27.34701 -26.34501 -24.25849 -23.15167 -22.11622 -20.77487 -20.63379 -19.72782 -18.36912 -17.12583 -16.62216 -16.21439 -15.86897 -15.49633 -15.25304 -14.56815 -14.39431 -13.98789 -13.77071 -13.67244 -13.32971 -13.25196 -12.94411 -12.81089 -12.21166 -11.96357 -11.72774 -11.53260 -11.44490 -11.39263 -11.15707 -10.93739 -10.79066 -10.68765 -10.66955 -10.33622 -10.07424 -9.79174 -9.78177 -9.46023 -9.25093 -8.97005 -8.47051 -8.26517 -6.30482 -3.98293 1.89113 2.93351 3.32398 3.49136 3.51373 3.69852 4.23076 4.35385 4.46369 4.57844 4.60599 4.69006 4.74521 4.97810 5.03727 5.12748 5.19177 5.24714 5.27691 5.39680 5.45757 5.46782 5.49881 5.62964 5.64464 5.66191 5.71471 5.72272 5.74864 5.85943 5.89832 5.96763 6.12612 6.20308 6.35479 6.51632 6.54954 6.63033 6.80377 7.03218 7.49157 7.60294 7.62538 8.30345 8.46581 8.54449 8.95653 9.73364 11.10407 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.002478 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.145080 B =11298.233769 C =11653.988814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.599 4.599 8 H 0.049 0.951 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.738 5.738 15 C 0.124 3.876 16 C -0.101 4.101 17 H 0.083 0.917 18 C -0.109 4.109 19 C -0.109 4.109 20 C -0.153 4.153 21 C -0.164 4.164 22 C -0.095 4.095 23 C -0.114 4.114 24 C -0.111 4.111 25 H 0.267 0.733 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -29.216 -0.196 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.190 4.190 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.637 4.637 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.126 4.126 11 C -0.180 4.180 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.392 5.392 15 C 0.000 4.000 16 C -0.120 4.120 17 H 0.101 0.899 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.171 4.171 21 C -0.182 4.182 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.149 4.149 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.232 0.768 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.219 -27.407 -0.193 27.435 hybrid contribution -0.422 -1.848 0.093 1.898 sum 0.798 -29.255 -0.100 29.266 Atomic orbital electron populations 1.70790 1.06863 1.30460 1.47160 1.25863 0.96575 1.02750 0.93861 0.83546 0.74866 0.75285 0.76573 1.20822 1.21440 1.21437 1.22085 0.94452 0.92022 1.55171 0.93241 1.19260 0.94622 0.93314 0.95791 1.21299 0.98320 0.91053 1.01893 1.21849 0.98244 0.94345 1.03564 1.21174 0.90291 0.83799 0.74817 1.90677 1.17338 1.84781 1.48702 1.46132 1.10054 1.05811 1.77199 1.21414 0.91883 0.84648 1.02031 1.22088 0.97584 0.93475 0.98844 0.89856 1.21921 0.99174 0.96641 0.96886 1.21053 0.98333 0.98477 0.96735 1.23088 0.99228 0.98973 0.95795 1.23006 0.97278 0.99375 0.98573 1.20064 0.92653 0.98143 1.02362 1.20481 0.97331 0.97857 0.99470 1.21468 0.98450 0.95161 0.99782 0.92227 0.97543 0.97546 0.92554 0.92570 0.89522 0.89518 0.76797 0.91774 0.91809 0.91761 0.91416 0.89845 0.91609 0.87235 0.87011 0.90844 0.91897 0.92311 0.92283 0.91438 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.70 13.65 55.43 0.76 -27.94 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 26.17 29.90 -169.99 -5.08 21.09 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.60 -17.87 9.11 -34.44 -0.31 -18.19 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 10 C -0.09 -1.96 4.44 -26.73 -0.12 -2.08 16 11 C -0.14 -2.38 5.70 -27.89 -0.16 -2.53 16 12 C 0.51 8.45 7.83 -10.99 -0.09 8.36 16 13 O -0.54 -11.16 15.98 5.55 0.09 -11.07 16 14 N -0.74 -8.82 5.35 -60.30 -0.32 -9.14 16 15 C 0.12 1.32 4.86 -4.04 -0.02 1.30 16 16 C -0.10 -0.77 1.89 -89.15 -0.17 -0.94 16 17 H 0.08 0.67 6.29 -51.93 -0.33 0.35 16 18 C -0.11 -0.77 4.76 -25.85 -0.12 -0.90 16 19 C -0.11 -0.70 5.42 -27.98 -0.15 -0.85 16 20 C -0.15 -1.02 8.55 -36.13 -0.31 -1.33 16 21 C -0.16 -1.07 9.28 -36.27 -0.34 -1.41 16 22 C -0.10 -0.56 5.13 -29.69 -0.15 -0.71 16 23 C -0.11 -0.70 4.90 -29.27 -0.14 -0.85 16 24 C -0.11 -0.74 5.06 -27.10 -0.14 -0.88 16 25 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 26 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 27 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 28 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 29 H 0.06 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.40 3.72 7.84 -40.82 -0.32 3.40 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 35 H 0.06 0.47 7.47 -51.93 -0.39 0.09 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.50 3.56 -51.93 -0.18 0.32 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.07 0.42 5.63 -51.93 -0.29 0.13 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.41 7.71 -51.93 -0.40 0.01 16 45 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 46 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -34.15 353.94 -9.71 -43.85 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.04 Total: -1.48 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -2.44 Total: -20.64 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.43 Total: -37.08 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.07 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.15 -9.71 -43.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890045168.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.713 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds