Wall clock time and date at job start Tue Mar 31 2020 02:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34299 * 125.79252 * 2 1 4 4 C 1.34305 * 109.47969 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.79133 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 240.02570 * 5 4 3 7 7 C 1.52992 * 109.46956 * 120.02258 * 5 4 3 8 8 C 1.53006 * 109.46866 * 0.02562 * 5 4 3 9 9 C 1.34514 * 108.41682 * 0.24152 * 4 3 2 10 10 C 1.34520 * 125.78836 * 180.02562 * 2 1 3 11 11 C 1.50698 * 126.57752 * 359.95727 * 10 2 1 12 12 N 1.46895 * 109.47317 * 80.00023 * 11 10 2 13 13 C 1.46897 * 111.00100 * 66.04656 * 12 11 10 14 14 C 1.46903 * 110.99966 * 189.99735 * 12 11 10 15 15 H 1.09001 * 109.47264 * 55.00242 * 14 12 11 16 16 C 1.53001 * 109.47133 * 294.99616 * 14 12 11 17 17 C 1.50699 * 109.47007 * 175.00105 * 14 12 11 18 18 H 1.07996 * 120.00304 * 359.97438 * 17 14 12 19 19 C 1.37884 * 120.00121 * 180.02562 * 17 14 12 20 20 N 1.31515 * 119.99739 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00156 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46793 * 60.00022 * 21 19 17 23 23 H 1.48493 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46925 * 300.00181 * 21 19 17 25 25 H 1.08997 * 109.47268 * 359.97145 * 1 2 3 26 26 H 1.08998 * 109.47590 * 119.97473 * 1 2 3 27 27 H 1.09009 * 109.47183 * 239.97524 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 31 31 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 33 33 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00219 * 8 5 4 35 35 H 1.09000 * 109.47050 * 60.00048 * 8 5 4 36 36 H 1.09001 * 109.47002 * 179.97438 * 8 5 4 37 37 H 1.08006 * 126.57558 * 179.76303 * 9 4 3 38 38 H 1.09004 * 109.47084 * 199.99685 * 11 10 2 39 39 H 1.09004 * 109.47342 * 319.99736 * 11 10 2 40 40 H 1.08998 * 109.47560 * 59.99562 * 13 12 11 41 41 H 1.09003 * 109.47093 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.46921 * 299.99623 * 13 12 11 43 43 H 1.09000 * 109.46817 * 60.00554 * 16 14 12 44 44 H 1.09001 * 109.47274 * 180.02562 * 16 14 12 45 45 H 1.08994 * 109.47469 * 300.00079 * 16 14 12 46 46 H 0.96996 * 120.00149 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7121 -0.0006 5 6 4.7706 1.6378 -0.0013 6 6 5.6151 1.3821 -1.2512 7 6 5.6169 1.3817 1.2472 8 6 4.2870 3.0894 -0.0007 9 6 3.6308 -0.6321 -0.0063 10 6 2.2936 -1.0912 -0.0005 11 6 1.8371 -2.5274 -0.0002 12 7 1.4588 -2.9212 -1.3639 13 6 2.6275 -2.9262 -2.2538 14 6 0.7888 -4.2285 -1.3675 15 1 -0.0619 -4.2028 -0.6865 16 6 1.7736 -5.3076 -0.9130 17 6 0.3075 -4.5424 -2.7607 18 1 0.4815 -3.8408 -3.5630 19 6 -0.3560 -5.7250 -3.0108 20 7 -0.5683 -6.5792 -2.0337 21 14 -0.9532 -6.1138 -4.7376 22 1 0.2055 -6.1492 -5.6657 23 1 -1.6303 -7.4353 -4.7413 24 1 -1.9087 -5.0661 -5.1784 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5134 -0.8902 27 1 -0.3634 -0.5143 0.8898 28 1 5.9596 0.3479 -1.2517 29 1 6.4750 2.0519 -1.2519 30 1 5.0121 1.5645 -2.1408 31 1 6.4768 2.0515 1.2469 32 1 5.0154 1.5638 2.1377 33 1 5.9615 0.3475 1.2468 34 1 3.6840 3.2718 -0.8901 35 1 3.6853 3.2715 0.8898 36 1 5.1471 3.7589 -0.0007 37 1 4.5212 -1.2434 -0.0118 38 1 2.6476 -3.1662 0.3507 39 1 0.9772 -2.6352 0.6609 40 1 3.3671 -3.6333 -1.8783 41 1 2.3191 -3.2208 -3.2569 42 1 3.0634 -1.9276 -2.2867 43 1 2.1217 -5.0806 0.0946 44 1 1.2766 -6.2777 -0.9162 45 1 2.6242 -5.3334 -1.5941 46 1 -1.0347 -7.4113 -2.2096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891934131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:19 Heat of formation + Delta-G solvation = 0.502873 kcal Electronic energy + Delta-G solvation = -22764.033717 eV Core-core repulsion = 19654.958797 eV Total energy + Delta-G solvation = -3109.074919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.35569 -37.30103 -36.90099 -33.60488 -32.14252 -31.07323 -28.73862 -27.54458 -27.43277 -27.02585 -25.58154 -25.10216 -23.34406 -21.48356 -20.32346 -19.37063 -18.05591 -16.36723 -16.03578 -15.95760 -15.00558 -14.70990 -14.20172 -14.16202 -14.02767 -13.62495 -13.50529 -12.86066 -12.76817 -12.64876 -12.44893 -12.37219 -12.31456 -11.98150 -11.84250 -11.51604 -11.47155 -11.19097 -11.16018 -11.02359 -10.97765 -10.83757 -10.71643 -10.62918 -10.32582 -9.97300 -9.78654 -9.22224 -8.83865 -8.35609 -7.79928 -7.05838 -5.98040 -4.01494 2.06469 2.95585 3.16138 3.34326 3.38430 3.41727 4.44475 4.53011 4.72009 4.79290 5.08174 5.26567 5.31566 5.33438 5.37410 5.42421 5.44502 5.60555 5.66360 5.68989 5.70084 5.77048 5.85963 5.89556 5.95268 6.10024 6.13470 6.16778 6.24373 6.26407 6.40542 6.44948 6.55405 6.65548 6.73236 6.88618 6.94731 6.97806 7.17325 7.52985 7.58767 7.76506 7.87663 8.17187 8.44555 8.65714 9.04630 9.63353 11.09032 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.003887 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.331903 B = 7201.961878 C = 7308.083529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.003 4.003 3 O -0.176 6.176 4 C -0.019 4.019 5 C 0.017 3.983 6 C -0.139 4.139 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.192 4.192 10 C -0.157 4.157 11 C 0.122 3.878 12 N -0.528 5.528 13 C 0.039 3.961 14 C 0.210 3.790 15 H 0.039 0.961 16 C -0.172 4.172 17 C -0.498 4.498 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.277 1.277 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.137 0.863 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.007 0.993 44 H 0.087 0.913 45 H 0.029 0.971 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.761 15.513 5.775 19.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 O -0.074 6.074 4 C -0.069 4.069 5 C 0.017 3.983 6 C -0.196 4.196 7 C -0.195 4.195 8 C -0.199 4.199 9 C -0.211 4.211 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.251 5.251 13 C -0.109 4.109 14 C 0.104 3.896 15 H 0.056 0.944 16 C -0.231 4.231 17 C -0.537 4.537 18 H 0.080 0.920 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.155 0.845 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.106 0.894 45 H 0.048 0.952 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.222 15.963 5.625 19.274 hybrid contribution 0.380 -1.227 -0.615 1.424 sum 9.603 14.736 5.010 18.288 Atomic orbital electron populations 1.20264 0.85082 1.02620 1.04403 1.22195 0.93705 0.83425 1.06002 1.83901 1.16069 1.35149 1.72255 1.21992 0.82926 0.93850 1.08106 1.19027 0.89289 0.93140 0.96823 1.21911 0.99082 1.02238 0.96370 1.21901 0.99077 1.02212 0.96317 1.21830 1.01154 0.94200 1.02700 1.21324 0.97639 0.93584 1.08603 1.20194 0.92107 0.96333 1.07234 1.20330 0.98545 0.88873 0.92865 1.62341 1.24811 1.32466 1.05530 1.22174 0.91953 0.98275 0.98546 1.19316 0.91653 0.81285 0.97331 0.94355 1.22401 0.99752 1.05295 0.95687 1.21087 1.35525 1.02959 0.94109 0.92036 1.24919 0.96081 0.96242 0.97005 1.69877 1.42248 1.10052 1.31296 0.86600 0.78947 0.77344 0.84733 1.20430 1.21436 1.20246 0.91736 0.88516 0.90233 0.92002 0.91857 0.92135 0.91837 0.92296 0.92049 0.92141 0.92248 0.92176 0.84508 0.95025 0.91095 0.96886 0.91085 0.93929 0.97440 0.89423 0.95184 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.12 36.00 0.36 -0.59 16 2 C 0.00 -0.05 7.32 -35.62 -0.26 -0.31 16 3 O -0.18 -2.79 10.06 5.72 0.06 -2.73 16 4 C -0.02 -0.27 5.68 -35.63 -0.20 -0.48 16 5 C 0.02 0.19 0.92 -155.66 -0.14 0.04 16 6 C -0.14 -1.35 8.34 37.16 0.31 -1.04 16 7 C -0.14 -1.26 8.35 37.15 0.31 -0.95 16 8 C -0.14 -1.37 8.03 37.16 0.30 -1.07 16 9 C -0.19 -2.99 9.51 -39.70 -0.38 -3.37 16 10 C -0.16 -2.72 4.72 -104.74 -0.49 -3.22 16 11 C 0.12 2.34 4.62 -4.98 -0.02 2.31 16 12 N -0.53 -11.52 4.73 -237.73 -1.13 -12.64 16 13 C 0.04 0.81 8.60 60.06 0.52 1.33 16 14 C 0.21 5.29 2.34 -68.86 -0.16 5.13 16 15 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 16 C -0.17 -4.21 8.28 37.16 0.31 -3.90 16 17 C -0.50 -13.62 7.88 -34.44 -0.27 -13.89 16 18 H 0.06 1.69 6.77 -52.49 -0.36 1.34 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 20 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 21 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 28 H 0.06 0.62 7.98 -51.93 -0.41 0.20 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.57 7.99 -51.93 -0.42 0.16 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 38 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 39 H 0.07 1.35 7.99 -51.93 -0.41 0.93 16 40 H 0.01 0.26 6.51 -51.93 -0.34 -0.07 16 41 H 0.07 1.57 6.42 -51.93 -0.33 1.23 16 42 H 0.04 0.82 6.79 -51.93 -0.35 0.47 16 43 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 44 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 45 H 0.03 0.71 6.47 -51.93 -0.34 0.38 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -29.00 359.50 -8.16 -37.16 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.19 Total: -0.24 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 0.08 Total: -18.49 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.50 Total: -37.49 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.06 Total: -2.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.00 -8.16 -37.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.659 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds