Wall clock time and date at job start Tue Mar 31 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34299 * 125.79252 * 2 1 4 4 C 1.34305 * 109.47969 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.79133 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 240.02570 * 5 4 3 7 7 C 1.52992 * 109.46956 * 120.02258 * 5 4 3 8 8 C 1.53006 * 109.46866 * 0.02562 * 5 4 3 9 9 C 1.34514 * 108.41682 * 0.24152 * 4 3 2 10 10 C 1.34520 * 125.78836 * 180.02562 * 2 1 3 11 11 C 1.50698 * 126.57752 * 359.95727 * 10 2 1 12 12 N 1.46895 * 109.47317 * 80.00023 * 11 10 2 13 13 C 1.46897 * 111.00100 * 66.04656 * 12 11 10 14 14 C 1.46903 * 110.99966 * 189.99735 * 12 11 10 15 15 H 1.09001 * 109.47264 * 55.00242 * 14 12 11 16 16 C 1.53001 * 109.47133 * 294.99616 * 14 12 11 17 17 C 1.50699 * 109.47007 * 175.00105 * 14 12 11 18 18 H 1.07996 * 120.00304 * 359.97438 * 17 14 12 19 19 C 1.37884 * 120.00121 * 180.02562 * 17 14 12 20 20 N 1.31515 * 119.99739 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 120.00156 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46793 * 60.00022 * 21 19 17 23 23 H 1.48493 * 109.47050 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46925 * 300.00181 * 21 19 17 25 25 H 1.08997 * 109.47268 * 359.97145 * 1 2 3 26 26 H 1.08998 * 109.47590 * 119.97473 * 1 2 3 27 27 H 1.09009 * 109.47183 * 239.97524 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 30 30 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 31 31 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 32 32 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 33 33 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 34 34 H 1.08993 * 109.46955 * 300.00219 * 8 5 4 35 35 H 1.09000 * 109.47050 * 60.00048 * 8 5 4 36 36 H 1.09001 * 109.47002 * 179.97438 * 8 5 4 37 37 H 1.08006 * 126.57558 * 179.76303 * 9 4 3 38 38 H 1.09004 * 109.47084 * 199.99685 * 11 10 2 39 39 H 1.09004 * 109.47342 * 319.99736 * 11 10 2 40 40 H 1.08998 * 109.47560 * 59.99562 * 13 12 11 41 41 H 1.09003 * 109.47093 * 180.02562 * 13 12 11 42 42 H 1.09005 * 109.46921 * 299.99623 * 13 12 11 43 43 H 1.09000 * 109.46817 * 60.00554 * 16 14 12 44 44 H 1.09001 * 109.47274 * 180.02562 * 16 14 12 45 45 H 1.08994 * 109.47469 * 300.00079 * 16 14 12 46 46 H 0.96996 * 120.00149 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7121 -0.0006 5 6 4.7706 1.6378 -0.0013 6 6 5.6151 1.3821 -1.2512 7 6 5.6169 1.3817 1.2472 8 6 4.2870 3.0894 -0.0007 9 6 3.6308 -0.6321 -0.0063 10 6 2.2936 -1.0912 -0.0005 11 6 1.8371 -2.5274 -0.0002 12 7 1.4588 -2.9212 -1.3639 13 6 2.6275 -2.9262 -2.2538 14 6 0.7888 -4.2285 -1.3675 15 1 -0.0619 -4.2028 -0.6865 16 6 1.7736 -5.3076 -0.9130 17 6 0.3075 -4.5424 -2.7607 18 1 0.4815 -3.8408 -3.5630 19 6 -0.3560 -5.7250 -3.0108 20 7 -0.5683 -6.5792 -2.0337 21 14 -0.9532 -6.1138 -4.7376 22 1 0.2055 -6.1492 -5.6657 23 1 -1.6303 -7.4353 -4.7413 24 1 -1.9087 -5.0661 -5.1784 25 1 -0.3633 1.0276 0.0005 26 1 -0.3634 -0.5134 -0.8902 27 1 -0.3634 -0.5143 0.8898 28 1 5.9596 0.3479 -1.2517 29 1 6.4750 2.0519 -1.2519 30 1 5.0121 1.5645 -2.1408 31 1 6.4768 2.0515 1.2469 32 1 5.0154 1.5638 2.1377 33 1 5.9615 0.3475 1.2468 34 1 3.6840 3.2718 -0.8901 35 1 3.6853 3.2715 0.8898 36 1 5.1471 3.7589 -0.0007 37 1 4.5212 -1.2434 -0.0118 38 1 2.6476 -3.1662 0.3507 39 1 0.9772 -2.6352 0.6609 40 1 3.3671 -3.6333 -1.8783 41 1 2.3191 -3.2208 -3.2569 42 1 3.0634 -1.9276 -2.2867 43 1 2.1217 -5.0806 0.0946 44 1 1.2766 -6.2777 -0.9162 45 1 2.6242 -5.3334 -1.5941 46 1 -1.0347 -7.4113 -2.2096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891934131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:18 Heat of formation + Delta-G solvation = -14.691605 kcal Electronic energy + Delta-G solvation = -22764.692599 eV Core-core repulsion = 19654.958797 eV Total energy + Delta-G solvation = -3109.733801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57444 -39.01756 -37.81953 -35.28868 -33.89482 -32.21591 -30.60292 -28.84618 -28.15695 -28.05945 -27.23323 -26.83301 -25.04091 -22.61580 -21.65058 -21.01435 -19.33856 -18.16264 -17.41392 -17.25064 -16.82655 -16.05991 -15.74405 -15.33731 -15.19660 -14.92024 -14.86594 -14.41928 -14.04451 -13.87462 -13.71047 -13.67100 -13.23220 -13.13605 -13.02704 -12.96872 -12.79344 -12.67694 -12.59601 -12.58489 -12.47368 -12.26174 -12.04189 -11.94388 -11.94070 -11.77410 -11.58212 -10.92992 -10.49132 -10.47000 -9.03767 -8.82048 -8.08967 -6.19588 0.86033 1.43836 1.45032 1.52574 1.67251 2.02967 2.44763 3.20146 3.49430 3.65918 3.88566 3.97040 4.01285 4.14404 4.22931 4.48494 4.50646 4.58424 4.65826 4.71453 4.75079 4.76019 4.76567 4.82053 4.86176 4.86624 4.91238 4.95911 4.98601 5.03781 5.11433 5.13336 5.16664 5.20562 5.22180 5.39337 5.43343 5.48429 5.55037 5.68880 5.72114 5.80507 6.19611 6.34921 6.50070 6.75275 6.93648 7.49421 8.96979 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.028181 B = 0.003887 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.331903 B = 7201.961878 C = 7308.083529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.012 4.012 3 O -0.181 6.181 4 C -0.009 4.009 5 C 0.014 3.986 6 C -0.137 4.137 7 C -0.135 4.135 8 C -0.139 4.139 9 C -0.208 4.208 10 C -0.177 4.177 11 C 0.130 3.870 12 N -0.533 5.533 13 C 0.049 3.951 14 C 0.216 3.784 15 H 0.010 0.990 16 C -0.158 4.158 17 C -0.514 4.514 18 H 0.055 0.945 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.029 0.971 39 H 0.066 0.934 40 H 0.014 0.986 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.062 0.938 45 H 0.029 0.971 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.048 17.124 5.534 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 O -0.078 6.078 4 C -0.059 4.059 5 C 0.014 3.986 6 C -0.194 4.194 7 C -0.192 4.192 8 C -0.197 4.197 9 C -0.227 4.227 10 C -0.179 4.179 11 C 0.002 3.998 12 N -0.256 5.256 13 C -0.099 4.099 14 C 0.109 3.891 15 H 0.028 0.972 16 C -0.217 4.217 17 C -0.552 4.552 18 H 0.073 0.927 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.783 3.217 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.163 0.837 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.032 0.968 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.519 17.588 5.388 21.190 hybrid contribution 0.018 -1.663 -0.492 1.735 sum 10.536 15.925 4.896 19.713 Atomic orbital electron populations 1.20276 0.83946 1.03973 1.03920 1.22511 0.94614 0.83435 1.05680 1.83925 1.16774 1.34951 1.72177 1.22743 0.83217 0.94276 1.05667 1.19282 0.88118 0.93009 0.98185 1.21916 0.99592 1.02705 0.95213 1.21899 0.99527 1.02724 0.95075 1.21827 1.02014 0.93878 1.01938 1.21425 0.97159 0.94354 1.09784 1.20113 0.93387 0.95368 1.08989 1.20220 0.98215 0.90205 0.91133 1.62239 1.25587 1.30455 1.07367 1.22065 0.91397 0.99099 0.97334 1.19080 0.91244 0.83073 0.95746 0.97224 1.22204 0.99204 1.03685 0.96634 1.21327 1.35914 1.03085 0.94897 0.92661 1.25656 0.96170 0.96090 1.00608 1.70001 1.42675 1.10312 1.33053 0.85625 0.78530 0.77173 0.80370 1.19835 1.21002 1.19803 0.89501 0.90284 0.89334 0.92443 0.89190 0.93260 0.89271 0.92801 0.92381 0.93160 0.92766 0.89584 0.83686 0.95311 0.91519 0.96783 0.92708 0.92395 0.95771 0.91905 0.95198 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.80 10.12 71.24 0.72 -1.08 16 2 C -0.01 -0.39 7.32 24.83 0.18 -0.21 16 3 O -0.18 -5.53 10.06 -2.46 -0.02 -5.56 16 4 C -0.01 -0.26 5.68 24.83 0.14 -0.11 16 5 C 0.01 0.27 0.92 -52.93 -0.05 0.22 16 6 C -0.14 -2.34 8.34 71.98 0.60 -1.73 16 7 C -0.14 -2.11 8.35 71.98 0.60 -1.51 16 8 C -0.14 -2.35 8.03 71.98 0.58 -1.77 16 9 C -0.21 -6.28 9.51 22.19 0.21 -6.07 16 10 C -0.18 -6.08 4.72 -19.94 -0.09 -6.17 16 11 C 0.13 5.01 4.62 85.56 0.40 5.40 16 12 N -0.53 -23.49 4.73 -906.04 -4.29 -27.78 16 13 C 0.05 2.05 8.60 127.69 1.10 3.14 16 14 C 0.22 11.07 2.34 44.17 0.10 11.17 16 15 H 0.01 0.56 8.03 -2.39 -0.02 0.54 16 16 C -0.16 -7.81 8.28 71.98 0.60 -7.22 16 17 C -0.51 -28.46 7.88 25.60 0.20 -28.26 16 18 H 0.06 3.07 6.77 -2.91 -0.02 3.05 16 19 C 0.01 0.73 5.30 84.66 0.45 1.18 16 20 N -0.92 -53.05 11.32 21.45 0.24 -52.81 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.06 1.03 7.98 -2.39 -0.02 1.01 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.95 7.99 -2.39 -0.02 0.93 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.03 1.12 6.94 -2.38 -0.02 1.10 16 39 H 0.07 2.58 7.99 -2.38 -0.02 2.56 16 40 H 0.01 0.56 6.51 -2.39 -0.02 0.55 16 41 H 0.05 2.42 6.42 -2.39 -0.02 2.41 16 42 H 0.06 2.20 6.79 -2.38 -0.02 2.18 16 43 H 0.02 1.06 6.75 -2.39 -0.02 1.05 16 44 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 45 H 0.03 1.43 6.47 -2.39 -0.02 1.41 16 46 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -61.84 359.50 4.62 -57.23 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.93 Total: 15.95 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 5.73 Total: -33.01 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -4.05 Total: -80.60 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.02 Total: -5.56 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -61.84 4.62 -57.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891934131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.536 kcal (2) G-P(sol) polarization free energy of solvation -61.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds