Wall clock time and date at job start Tue Mar 31 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.87026 * 2 1 4 4 C 1.54402 * 109.88218 * 238.83056 * 2 1 3 5 5 C 1.53478 * 103.78567 * 243.38402 * 4 2 1 6 6 C 1.52379 * 116.31215 * 250.76810 * 5 4 2 7 7 C 1.54044 * 86.63295 * 265.79877 * 6 5 4 8 8 N 1.46907 * 113.56827 * 221.00898 * 7 6 5 9 9 C 1.46891 * 110.99847 * 205.00208 * 8 7 6 10 10 C 1.53004 * 109.47144 * 185.18006 * 9 8 7 11 11 C 1.50701 * 115.54701 * 39.53571 * 10 9 8 12 12 H 1.07999 * 119.99927 * 264.94033 * 11 10 9 13 13 C 1.37880 * 119.99896 * 84.94018 * 11 10 9 14 14 N 1.31509 * 119.99967 * 353.32537 * 13 11 10 15 15 Si 1.86802 * 119.99761 * 173.32027 * 13 11 10 16 16 H 1.48508 * 109.46912 * 90.00210 * 15 13 11 17 17 H 1.48497 * 109.46980 * 209.99805 * 15 13 11 18 18 H 1.48495 * 109.47342 * 330.00402 * 15 13 11 19 19 C 1.52996 * 117.49672 * 253.83072 * 10 9 8 20 20 C 1.52999 * 117.49945 * 185.20610 * 10 9 8 21 21 C 1.52374 * 116.31799 * 148.44909 * 5 4 2 22 22 C 1.53670 * 103.67409 * 19.60083 * 5 4 2 23 23 O 1.43861 * 109.87892 * 121.00252 * 2 1 3 24 24 H 1.08998 * 109.47207 * 300.44795 * 1 2 3 25 25 H 1.08997 * 109.46731 * 60.45118 * 1 2 3 26 26 H 1.09006 * 109.46729 * 180.44614 * 1 2 3 27 27 H 1.08995 * 109.47052 * 179.55148 * 3 2 1 28 28 H 1.09002 * 109.47015 * 299.55321 * 3 2 1 29 29 H 1.08996 * 109.47171 * 59.55358 * 3 2 1 30 30 H 1.09001 * 110.56383 * 124.80632 * 4 2 1 31 31 H 1.09001 * 110.56333 * 1.96190 * 4 2 1 32 32 H 1.08999 * 113.68399 * 151.36265 * 6 5 4 33 33 H 1.08994 * 113.77388 * 20.24161 * 6 5 4 34 34 H 1.08991 * 113.56987 * 90.24670 * 7 6 5 35 35 H 1.00903 * 110.99273 * 328.95608 * 8 7 6 36 36 H 1.09003 * 109.47205 * 305.17989 * 9 8 7 37 37 H 1.09000 * 109.47482 * 65.17610 * 9 8 7 38 38 H 0.97004 * 119.99862 * 180.02562 * 14 13 11 39 39 H 1.08996 * 117.50110 * 359.97438 * 19 10 9 40 40 H 1.09003 * 117.50020 * 145.01851 * 19 10 9 41 41 H 1.09002 * 117.49678 * 214.97974 * 20 10 9 42 42 H 1.08993 * 117.49805 * 359.97438 * 20 10 9 43 43 H 1.08999 * 113.68748 * 339.76339 * 21 5 4 44 44 H 1.09007 * 113.68834 * 208.63222 * 21 5 4 45 45 H 1.09000 * 110.64411 * 83.06737 * 22 5 4 46 46 H 1.09005 * 110.63919 * 206.11965 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0551 -0.7515 -1.2424 5 6 2.8075 -1.9522 -0.6526 6 6 4.3263 -1.9224 -0.7718 7 6 4.1504 -2.7445 -2.0626 8 7 5.1425 -3.8171 -2.2157 9 6 5.3287 -4.1638 -3.6309 10 6 6.2680 -5.3665 -3.7420 11 6 6.0740 -6.4408 -2.7030 12 1 6.6788 -6.4421 -1.8082 13 6 5.1245 -7.4219 -2.8948 14 7 4.2998 -7.3482 -3.9166 15 14 5.0095 -8.8560 -1.7033 16 1 4.0725 -8.5120 -0.6036 17 1 4.5111 -10.0569 -2.4207 18 1 6.3532 -9.1391 -1.1382 19 6 7.6937 -5.1065 -4.2323 20 6 6.6867 -5.8086 -5.1456 21 6 2.8054 -3.2270 -1.4873 22 6 2.2411 -2.0723 0.7708 23 8 2.0192 -0.6968 1.1596 24 1 -0.3633 0.5208 0.8859 25 1 -0.3633 0.5068 -0.8940 26 1 -0.3633 -1.0277 0.0080 27 1 3.1400 1.4313 0.0080 28 1 1.6969 1.9529 -0.8940 29 1 1.6838 1.9576 0.8859 30 1 2.7332 -0.1183 -1.8146 31 1 1.2262 -1.0875 -1.8653 32 1 4.8387 -2.4620 0.0247 33 1 4.7344 -0.9258 -0.9396 34 1 4.0468 -2.1324 -2.9584 35 1 6.0198 -3.5619 -1.7873 36 1 4.3645 -4.4137 -4.0737 37 1 5.7619 -3.3145 -4.1592 38 1 3.6315 -8.0383 -4.0513 39 1 7.9624 -4.0787 -4.4762 40 1 8.4919 -5.7123 -3.8034 41 1 6.8223 -6.8764 -5.3174 42 1 6.2927 -5.2429 -5.9898 43 1 2.0031 -3.2667 -2.2240 44 1 2.8843 -4.1386 -0.8947 45 1 1.3024 -2.6263 0.7654 46 1 2.9647 -2.5470 1.4335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926347179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:43 Heat of formation + Delta-G solvation = -6.022039 kcal Electronic energy + Delta-G solvation = -22678.081896 eV Core-core repulsion = 19568.724035 eV Total energy + Delta-G solvation = -3109.357861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71068 -37.73440 -36.49635 -33.15928 -32.81178 -31.74117 -28.55655 -27.53871 -26.06303 -25.56792 -25.43150 -24.09340 -21.15816 -20.80860 -19.99299 -19.05571 -18.33938 -16.06306 -15.93133 -15.65347 -15.22855 -14.93583 -14.62405 -14.28147 -14.05683 -13.68085 -13.26034 -13.11697 -12.96599 -12.52130 -12.38835 -12.22981 -12.03250 -11.79352 -11.64014 -11.46832 -11.42129 -11.03123 -10.86615 -10.72568 -10.64239 -10.42357 -10.30097 -10.23030 -10.06366 -9.94920 -9.54222 -9.27274 -8.74975 -8.25965 -7.97314 -7.38007 -5.86830 -3.86678 3.39048 3.45338 3.48627 3.78313 4.45368 4.54436 4.57916 4.68056 4.86740 4.92310 5.00986 5.11374 5.28409 5.31307 5.41297 5.42904 5.47910 5.49601 5.56244 5.61149 5.68556 5.76658 5.77873 5.87514 5.95644 6.02094 6.02397 6.13360 6.16734 6.22088 6.32388 6.36263 6.54727 6.60310 6.63089 6.71806 6.78298 6.98493 7.02774 7.15186 7.51420 7.54596 8.04478 8.13088 8.31887 8.62986 9.09005 9.75402 11.23812 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.004225 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.410672 B = 6626.343721 C = 7316.028633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 C -0.142 4.142 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.123 4.123 7 C 0.066 3.934 8 N -0.645 5.645 9 C 0.109 3.891 10 C 0.050 3.950 11 C -0.461 4.461 12 H 0.056 0.944 13 C 0.073 3.927 14 N -0.884 5.884 15 Si 0.885 3.115 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.219 4.219 20 C -0.159 4.159 21 C -0.105 4.105 22 C 0.064 3.936 23 O -0.372 6.372 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.331 0.669 36 H 0.069 0.931 37 H -0.009 1.009 38 H 0.255 0.745 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 14.652 5.229 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.058 3.942 3 C -0.199 4.199 4 C -0.159 4.159 5 C -0.117 4.117 6 C -0.160 4.160 7 C -0.045 4.045 8 N -0.274 5.274 9 C -0.020 4.020 10 C 0.049 3.951 11 C -0.500 4.500 12 H 0.074 0.926 13 C -0.128 4.128 14 N -0.522 5.522 15 Si 0.713 3.287 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.257 4.257 20 C -0.197 4.197 21 C -0.143 4.143 22 C -0.013 4.013 23 O -0.292 6.292 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.087 0.913 37 H 0.009 0.991 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.078 0.922 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.019 14.140 5.450 16.306 hybrid contribution 0.235 -0.217 -0.058 0.325 sum -5.784 13.923 5.392 16.012 Atomic orbital electron populations 1.22253 0.95196 1.02432 1.02121 1.22148 0.93309 0.93067 0.85667 1.21883 1.01775 0.94218 1.02038 1.22693 1.00071 0.96049 0.97133 1.22275 0.96704 0.96873 0.95821 1.23030 0.94206 0.99804 0.98999 1.22985 0.94669 0.91674 0.95169 1.60373 1.12233 1.37976 1.16800 1.21513 0.99985 0.94030 0.86496 1.18897 0.88311 0.94274 0.93629 1.20134 1.18834 1.07453 1.03534 0.92596 1.24836 0.95246 0.97662 0.95090 1.70007 1.18938 1.33796 1.29441 0.86730 0.78118 0.82484 0.81354 1.20825 1.21647 1.20176 1.23085 0.95705 0.98499 1.08371 1.22482 1.03636 0.99026 0.94585 1.22826 0.97471 0.95926 0.98110 1.23338 0.99716 0.83544 0.94672 1.88901 1.85978 1.21311 1.32975 0.92136 0.91766 0.92248 0.91921 0.91535 0.92163 0.90450 0.90334 0.89150 0.92011 0.92437 0.85039 0.91282 0.99097 0.93550 0.92203 0.90608 0.90139 0.92245 0.92027 0.88651 0.92235 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.63 37.16 0.32 -1.26 16 2 C 0.10 1.08 1.20 -89.88 -0.11 0.97 16 3 C -0.14 -1.35 8.69 37.16 0.32 -1.03 16 4 C -0.12 -1.39 5.61 -25.75 -0.14 -1.53 16 5 C -0.12 -1.51 1.04 -154.59 -0.16 -1.67 16 6 C -0.12 -1.67 6.92 -26.50 -0.18 -1.85 16 7 C 0.07 1.06 4.03 -66.66 -0.27 0.79 16 8 N -0.64 -12.66 5.85 -105.61 -0.62 -13.28 16 9 C 0.11 2.39 5.60 -3.83 -0.02 2.37 16 10 C 0.05 1.20 1.73 -155.66 -0.27 0.93 16 11 C -0.46 -12.37 8.15 -34.44 -0.28 -12.65 16 12 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 13 C 0.07 2.01 5.39 -17.82 -0.10 1.91 16 14 N -0.88 -25.08 12.95 55.43 0.72 -24.37 16 15 Si 0.88 21.44 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.22 -4.77 9.88 -26.73 -0.26 -5.03 16 20 C -0.16 -3.75 9.48 -26.73 -0.25 -4.01 16 21 C -0.10 -1.64 7.24 -26.51 -0.19 -1.83 16 22 C 0.06 0.82 7.07 37.51 0.27 1.08 16 23 O -0.37 -4.99 10.86 -35.23 -0.38 -5.37 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.84 7.48 -51.93 -0.39 0.45 16 31 H 0.08 0.86 7.58 -51.93 -0.39 0.47 16 32 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 33 H 0.06 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.33 6.21 8.60 -39.29 -0.34 5.87 16 36 H 0.07 1.69 8.13 -51.93 -0.42 1.27 16 37 H -0.01 -0.18 7.94 -51.93 -0.41 -0.60 16 38 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 41 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 44 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 1.16 8.00 -51.93 -0.42 0.74 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -28.30 364.67 -9.79 -38.09 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.65 Total: 5.81 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.33 Total: -22.79 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.10 Total: -37.64 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.38 Total: -5.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.30 -9.79 -38.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926347179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.070 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds