Wall clock time and date at job start Tue Mar 31 2020 02:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.87026 * 2 1 4 4 C 1.54402 * 109.88218 * 238.83056 * 2 1 3 5 5 C 1.53478 * 103.78567 * 243.38402 * 4 2 1 6 6 C 1.52379 * 116.31215 * 250.76810 * 5 4 2 7 7 C 1.54044 * 86.63295 * 265.79877 * 6 5 4 8 8 N 1.46907 * 113.56827 * 221.00898 * 7 6 5 9 9 C 1.46891 * 110.99847 * 205.00208 * 8 7 6 10 10 C 1.53004 * 109.47144 * 185.18006 * 9 8 7 11 11 C 1.50701 * 115.54701 * 39.53571 * 10 9 8 12 12 H 1.07999 * 119.99927 * 264.94033 * 11 10 9 13 13 C 1.37880 * 119.99896 * 84.94018 * 11 10 9 14 14 N 1.31509 * 119.99967 * 353.32537 * 13 11 10 15 15 Si 1.86802 * 119.99761 * 173.32027 * 13 11 10 16 16 H 1.48508 * 109.46912 * 90.00210 * 15 13 11 17 17 H 1.48497 * 109.46980 * 209.99805 * 15 13 11 18 18 H 1.48495 * 109.47342 * 330.00402 * 15 13 11 19 19 C 1.52996 * 117.49672 * 253.83072 * 10 9 8 20 20 C 1.52999 * 117.49945 * 185.20610 * 10 9 8 21 21 C 1.52374 * 116.31799 * 148.44909 * 5 4 2 22 22 C 1.53670 * 103.67409 * 19.60083 * 5 4 2 23 23 O 1.43861 * 109.87892 * 121.00252 * 2 1 3 24 24 H 1.08998 * 109.47207 * 300.44795 * 1 2 3 25 25 H 1.08997 * 109.46731 * 60.45118 * 1 2 3 26 26 H 1.09006 * 109.46729 * 180.44614 * 1 2 3 27 27 H 1.08995 * 109.47052 * 179.55148 * 3 2 1 28 28 H 1.09002 * 109.47015 * 299.55321 * 3 2 1 29 29 H 1.08996 * 109.47171 * 59.55358 * 3 2 1 30 30 H 1.09001 * 110.56383 * 124.80632 * 4 2 1 31 31 H 1.09001 * 110.56333 * 1.96190 * 4 2 1 32 32 H 1.08999 * 113.68399 * 151.36265 * 6 5 4 33 33 H 1.08994 * 113.77388 * 20.24161 * 6 5 4 34 34 H 1.08991 * 113.56987 * 90.24670 * 7 6 5 35 35 H 1.00903 * 110.99273 * 328.95608 * 8 7 6 36 36 H 1.09003 * 109.47205 * 305.17989 * 9 8 7 37 37 H 1.09000 * 109.47482 * 65.17610 * 9 8 7 38 38 H 0.97004 * 119.99862 * 180.02562 * 14 13 11 39 39 H 1.08996 * 117.50110 * 359.97438 * 19 10 9 40 40 H 1.09003 * 117.50020 * 145.01851 * 19 10 9 41 41 H 1.09002 * 117.49678 * 214.97974 * 20 10 9 42 42 H 1.08993 * 117.49805 * 359.97438 * 20 10 9 43 43 H 1.08999 * 113.68748 * 339.76339 * 21 5 4 44 44 H 1.09007 * 113.68834 * 208.63222 * 21 5 4 45 45 H 1.09000 * 110.64411 * 83.06737 * 22 5 4 46 46 H 1.09005 * 110.63919 * 206.11965 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0501 1.4389 0.0000 4 6 2.0551 -0.7515 -1.2424 5 6 2.8075 -1.9522 -0.6526 6 6 4.3263 -1.9224 -0.7718 7 6 4.1504 -2.7445 -2.0626 8 7 5.1425 -3.8171 -2.2157 9 6 5.3287 -4.1638 -3.6309 10 6 6.2680 -5.3665 -3.7420 11 6 6.0740 -6.4408 -2.7030 12 1 6.6788 -6.4421 -1.8082 13 6 5.1245 -7.4219 -2.8948 14 7 4.2998 -7.3482 -3.9166 15 14 5.0095 -8.8560 -1.7033 16 1 4.0725 -8.5120 -0.6036 17 1 4.5111 -10.0569 -2.4207 18 1 6.3532 -9.1391 -1.1382 19 6 7.6937 -5.1065 -4.2323 20 6 6.6867 -5.8086 -5.1456 21 6 2.8054 -3.2270 -1.4873 22 6 2.2411 -2.0723 0.7708 23 8 2.0192 -0.6968 1.1596 24 1 -0.3633 0.5208 0.8859 25 1 -0.3633 0.5068 -0.8940 26 1 -0.3633 -1.0277 0.0080 27 1 3.1400 1.4313 0.0080 28 1 1.6969 1.9529 -0.8940 29 1 1.6838 1.9576 0.8859 30 1 2.7332 -0.1183 -1.8146 31 1 1.2262 -1.0875 -1.8653 32 1 4.8387 -2.4620 0.0247 33 1 4.7344 -0.9258 -0.9396 34 1 4.0468 -2.1324 -2.9584 35 1 6.0198 -3.5619 -1.7873 36 1 4.3645 -4.4137 -4.0737 37 1 5.7619 -3.3145 -4.1592 38 1 3.6315 -8.0383 -4.0513 39 1 7.9624 -4.0787 -4.4762 40 1 8.4919 -5.7123 -3.8034 41 1 6.8223 -6.8764 -5.3174 42 1 6.2927 -5.2429 -5.9898 43 1 2.0031 -3.2667 -2.2240 44 1 2.8843 -4.1386 -0.8947 45 1 1.3024 -2.6263 0.7654 46 1 2.9647 -2.5470 1.4335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926347179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:41 Heat of formation + Delta-G solvation = -21.312924 kcal Electronic energy + Delta-G solvation = -22678.744958 eV Core-core repulsion = 19568.724035 eV Total energy + Delta-G solvation = -3110.020923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.75890 -39.05197 -38.11748 -34.33139 -34.02227 -33.79611 -29.70214 -28.29528 -27.50579 -26.96141 -26.74465 -25.73804 -22.91053 -22.09213 -20.94820 -20.89110 -19.52308 -17.91424 -17.05107 -16.72414 -16.55099 -16.29586 -16.15279 -15.86230 -15.26537 -15.01547 -14.64583 -14.46443 -14.06427 -13.78214 -13.61062 -13.36288 -13.17588 -13.08825 -12.91316 -12.83466 -12.65688 -12.57800 -12.43871 -12.33654 -12.11266 -11.95761 -11.83181 -11.47108 -11.31111 -11.17312 -10.99894 -10.68685 -10.47528 -10.27266 -9.84437 -8.90877 -7.96268 -5.99921 1.44433 1.46478 1.54103 2.52387 2.84629 3.33042 3.37085 3.52835 3.56661 3.67514 3.75785 3.90508 4.00835 4.10783 4.20728 4.26685 4.38153 4.46606 4.55418 4.61447 4.70707 4.76660 4.77772 4.79494 4.81875 4.86515 4.89972 4.93212 4.96477 4.99055 5.01962 5.06901 5.13639 5.15862 5.26780 5.29759 5.39672 5.41635 5.47792 5.66699 5.74677 5.92537 6.06295 6.45849 6.65761 6.85426 7.01836 7.64126 9.13493 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.004225 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.410672 B = 6626.343721 C = 7316.028633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.104 4.104 6 C -0.110 4.110 7 C 0.062 3.938 8 N -0.660 5.660 9 C 0.124 3.876 10 C 0.022 3.978 11 C -0.465 4.465 12 H 0.047 0.953 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 0.937 3.063 16 H -0.282 1.282 17 H -0.291 1.291 18 H -0.272 1.272 19 C -0.192 4.192 20 C -0.168 4.168 21 C -0.109 4.109 22 C 0.063 3.937 23 O -0.388 6.388 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.337 0.663 36 H 0.036 0.964 37 H 0.009 0.991 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 16.447 5.681 18.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.052 3.948 3 C -0.197 4.197 4 C -0.157 4.157 5 C -0.105 4.105 6 C -0.148 4.148 7 C -0.048 4.048 8 N -0.290 5.290 9 C -0.006 4.006 10 C 0.022 3.978 11 C -0.504 4.504 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.551 5.551 15 Si 0.765 3.235 16 H -0.208 1.208 17 H -0.217 1.217 18 H -0.197 1.197 19 C -0.229 4.229 20 C -0.206 4.206 21 C -0.148 4.148 22 C -0.013 4.013 23 O -0.308 6.308 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.817 15.943 5.914 17.972 hybrid contribution 0.189 -0.768 -0.200 0.815 sum -5.628 15.175 5.714 17.164 Atomic orbital electron populations 1.22250 0.94224 1.02253 1.03136 1.22360 0.94162 0.93636 0.84628 1.21900 1.01499 0.93212 1.03136 1.22718 1.00198 0.95325 0.97447 1.22154 0.96531 0.96059 0.95732 1.22938 0.94696 0.99988 0.97163 1.23079 0.93855 0.91352 0.96560 1.60266 1.13147 1.40093 1.15485 1.21196 0.97712 0.93714 0.87928 1.19046 0.90694 0.94853 0.93227 1.20355 1.18130 1.08190 1.03694 0.93505 1.25426 0.95285 0.99772 0.96470 1.70114 1.19604 1.34394 1.30943 0.85893 0.78070 0.79974 0.79586 1.20826 1.21682 1.19662 1.23069 0.94228 0.99702 1.05863 1.22398 1.05233 0.98019 0.94971 1.22756 0.97330 0.96359 0.98318 1.23313 0.99822 0.83743 0.94418 1.88892 1.86271 1.21354 1.34238 0.91897 0.90022 0.93030 0.92346 0.89611 0.91961 0.89473 0.89898 0.89577 0.90320 0.91932 0.84473 0.94505 0.97298 0.93915 0.89329 0.90620 0.92570 0.91205 0.92408 0.91111 0.92076 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 8.63 71.98 0.62 -2.17 16 2 C 0.09 1.82 1.20 -10.32 -0.01 1.81 16 3 C -0.14 -2.30 8.69 71.98 0.63 -1.67 16 4 C -0.12 -2.46 5.61 31.23 0.18 -2.29 16 5 C -0.10 -2.57 1.04 -52.23 -0.05 -2.63 16 6 C -0.11 -2.82 6.92 30.74 0.21 -2.61 16 7 C 0.06 1.94 4.03 45.60 0.18 2.12 16 8 N -0.66 -25.61 5.85 -488.06 -2.85 -28.47 16 9 C 0.12 5.39 5.60 86.31 0.48 5.88 16 10 C 0.02 1.08 1.73 -52.93 -0.09 0.98 16 11 C -0.47 -25.03 8.15 25.60 0.21 -24.82 16 12 H 0.05 2.55 7.82 -2.91 -0.02 2.52 16 13 C 0.03 1.61 5.39 84.66 0.46 2.07 16 14 N -0.91 -52.62 12.95 21.45 0.28 -52.34 16 15 Si 0.94 44.44 29.54 68.60 2.03 46.46 16 16 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 17 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 C -0.19 -7.98 9.88 30.59 0.30 -7.67 16 20 C -0.17 -7.87 9.48 30.60 0.29 -7.58 16 21 C -0.11 -3.40 7.24 30.74 0.22 -3.18 16 22 C 0.06 1.57 7.07 72.21 0.51 2.08 16 23 O -0.39 -9.80 10.86 -148.98 -1.62 -11.42 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.64 7.48 -2.39 -0.02 1.62 16 31 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 32 H 0.09 2.30 8.05 -2.39 -0.02 2.28 16 33 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 34 H 0.06 1.92 7.87 -2.39 -0.02 1.90 16 35 H 0.34 12.27 8.60 -89.69 -0.77 11.50 16 36 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 37 H 0.01 0.36 7.94 -2.39 -0.02 0.34 16 38 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.09 3.19 8.08 -2.39 -0.02 3.17 16 40 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.06 1.80 8.03 -2.39 -0.02 1.79 16 44 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 2.24 8.00 -2.38 -0.02 2.23 16 Total: -1.00 -59.99 364.67 2.12 -57.87 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 0.15 Total: 27.57 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.13 Total: -39.67 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.58 Total: -80.81 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.62 Total: -11.42 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.99 2.12 -57.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926347179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.561 kcal (2) G-P(sol) polarization free energy of solvation -59.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds