Wall clock time and date at job start Tue Mar 31 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47118 * 239.99992 * 3 2 1 5 5 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47480 * 119.99840 * 3 2 1 7 7 C 1.37878 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47005 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46960 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00070 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99812 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00078 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47505 * 180.02562 * 16 15 13 18 18 C 1.52304 * 115.91593 * 248.17407 * 17 16 15 19 19 C 1.52069 * 115.31627 * 180.08682 * 17 16 15 20 20 H 1.08997 * 117.25658 * 359.63841 * 19 17 16 21 21 C 1.52713 * 120.52457 * 211.01350 * 19 17 16 22 22 C 1.53191 * 110.27282 * 21.42667 * 21 19 17 23 23 C 1.53301 * 108.42152 * 305.66249 * 22 21 19 24 24 C 1.52078 * 114.63788 * 34.41692 * 17 16 15 25 25 H 0.97005 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47528 * 60.00319 * 9 7 2 27 27 H 1.09003 * 109.47520 * 299.99936 * 9 7 2 28 28 H 1.09004 * 109.46949 * 60.00324 * 10 9 7 29 29 H 1.08996 * 109.47215 * 299.99692 * 10 9 7 30 30 H 1.08998 * 109.46893 * 59.99960 * 11 10 9 31 31 H 1.08999 * 109.47209 * 300.00438 * 11 10 9 32 32 H 1.08996 * 109.47291 * 59.99627 * 12 11 10 33 33 H 1.09003 * 109.46775 * 300.00305 * 12 11 10 34 34 H 0.96999 * 120.00157 * 359.97438 * 15 13 12 35 35 H 1.08998 * 109.46919 * 59.99799 * 16 15 13 36 36 H 1.08999 * 109.46963 * 300.00412 * 16 15 13 37 37 H 1.09006 * 117.53539 * 1.58340 * 18 17 16 38 38 H 1.09000 * 117.53917 * 146.76070 * 18 17 16 39 39 H 1.08994 * 109.35680 * 141.67938 * 21 19 17 40 40 H 1.09006 * 109.35677 * 261.39932 * 21 19 17 41 41 H 1.09001 * 109.88664 * 185.86748 * 22 21 19 42 42 H 1.09004 * 109.50709 * 65.22825 * 22 21 19 43 43 H 1.09002 * 109.61781 * 314.48032 * 23 22 21 44 44 H 1.08998 * 109.61503 * 194.12173 * 23 22 21 45 45 H 1.08995 * 109.26765 * 45.35851 * 24 17 16 46 46 H 1.09004 * 109.26550 * 285.89547 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0033 12 6 2.4744 -6.1501 0.0037 13 6 1.7209 -7.4551 0.0048 14 8 0.5081 -7.4551 0.0048 15 7 2.3948 -8.6223 0.0048 16 6 1.6623 -9.8910 0.0054 17 6 2.6565 -11.0540 0.0059 18 6 2.7019 -11.8914 -1.2654 19 6 2.0342 -12.4415 0.0045 20 1 0.9458 -12.5004 0.0093 21 6 2.7446 -13.6109 0.6825 22 6 3.7468 -13.0941 1.7194 23 6 4.6897 -12.1018 1.0293 24 6 3.9352 -10.7945 0.7871 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8726 -3.6039 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 0.8526 -5.0455 -0.8860 31 1 0.8545 -5.0442 0.8940 32 1 3.1018 -6.0915 0.8931 33 1 3.1005 -6.0931 -0.8868 34 1 3.3648 -8.6223 0.0037 35 1 1.0353 -9.9489 -0.8843 36 1 1.0360 -9.9485 0.8956 37 1 2.0517 -11.5941 -2.0882 38 1 3.6630 -12.3162 -1.5550 39 1 2.0077 -14.2437 1.1769 40 1 3.2765 -14.1950 -0.0687 41 1 4.3233 -13.9257 2.1246 42 1 3.2108 -12.5905 2.5241 43 1 5.0218 -12.5146 0.0767 44 1 5.5531 -11.9132 1.6673 45 1 3.6851 -10.3406 1.7460 46 1 4.5700 -10.1123 0.2216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927428430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:38 Heat of formation + Delta-G solvation = -59.481651 kcal Electronic energy + Delta-G solvation = -21139.346479 eV Core-core repulsion = 18027.670436 eV Total energy + Delta-G solvation = -3111.676044 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.59758 -39.26603 -35.16739 -34.68183 -33.46243 -32.57666 -31.14843 -29.77959 -27.13695 -25.21568 -25.10814 -22.37280 -22.28917 -21.14993 -20.11269 -19.92254 -18.58881 -17.16193 -16.32799 -16.04180 -15.78603 -15.31032 -14.72256 -14.67922 -14.41934 -14.33943 -14.05547 -13.77628 -13.48062 -13.19766 -12.60594 -12.52347 -12.30671 -11.98674 -11.69677 -11.64228 -11.55704 -11.36340 -11.25298 -10.94290 -10.72011 -10.51428 -10.48810 -10.37185 -10.21503 -10.01856 -9.71912 -9.57521 -9.18434 -9.07430 -8.95809 -8.27729 -5.92593 -3.95113 2.78459 3.04405 3.37003 3.39571 3.41263 3.43620 4.09582 4.29838 4.31753 4.43860 4.51001 4.62120 4.78829 4.80951 4.92717 5.05979 5.13207 5.21487 5.35955 5.36531 5.41019 5.42638 5.44002 5.44705 5.51846 5.58407 5.70138 5.73105 5.76467 5.82439 5.89027 5.92451 5.96549 6.18157 6.34330 6.38179 6.59114 6.88125 7.06192 7.23577 7.49246 7.76754 7.93422 8.09015 8.32180 8.50731 9.12426 9.68213 11.18682 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.046734 B = 0.002233 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.987964 B =12537.756644 C =12866.293973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.510 3.490 14 O -0.537 6.537 15 N -0.736 5.736 16 C 0.153 3.847 17 C -0.124 4.124 18 C -0.173 4.173 19 C -0.137 4.137 20 H 0.105 0.895 21 C -0.089 4.089 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.084 4.084 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -29.562 0.912 31.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.413 6.413 15 N -0.391 5.391 16 C 0.030 3.970 17 C -0.124 4.124 18 C -0.209 4.209 19 C -0.156 4.156 20 H 0.123 0.877 21 C -0.126 4.126 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.235 0.765 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.818 -29.434 0.907 30.740 hybrid contribution 0.860 0.911 -0.080 1.256 sum 9.678 -28.523 0.827 30.131 Atomic orbital electron populations 1.69969 1.06037 1.26592 1.50879 1.25049 0.94855 0.99224 0.95500 0.86664 0.79560 0.83255 0.78528 1.20303 1.21339 1.20296 1.21248 0.92936 0.91220 1.50459 0.92816 1.19096 0.94071 0.91264 0.97308 1.21652 0.99067 0.94027 1.00036 1.21448 0.97026 0.92706 1.02939 1.21789 1.00085 0.92065 1.03918 1.21109 0.88455 0.85612 0.75053 1.90704 1.14283 1.87728 1.48582 1.46137 1.10379 1.05488 1.77062 1.20915 0.92899 0.81024 1.02213 1.21236 0.97965 0.91840 1.01366 1.23331 1.02555 1.03844 0.91204 1.22280 0.99179 0.93410 1.00717 0.87720 1.21110 0.97887 0.95713 0.97934 1.21635 0.97256 0.98863 0.98070 1.21592 0.97974 0.95407 1.00840 1.20801 0.93784 0.97813 0.99751 0.93005 0.96601 0.96593 0.93499 0.93494 0.91831 0.91828 0.89193 0.89205 0.76516 0.91489 0.91338 0.88658 0.88534 0.91521 0.91634 0.91831 0.91568 0.91817 0.91561 0.90919 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.06 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.31 5.15 -26.72 -0.14 -2.45 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 13 C 0.51 7.34 7.83 -10.99 -0.09 7.25 16 14 O -0.54 -10.11 15.98 5.56 0.09 -10.03 16 15 N -0.74 -7.71 5.33 -60.30 -0.32 -8.03 16 16 C 0.15 1.52 5.64 -4.05 -0.02 1.50 16 17 C -0.12 -0.90 2.43 -155.81 -0.38 -1.28 16 18 C -0.17 -1.16 9.24 -26.75 -0.25 -1.41 16 19 C -0.14 -0.92 5.80 -90.90 -0.53 -1.45 16 20 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 21 C -0.09 -0.50 5.84 -26.78 -0.16 -0.66 16 22 C -0.12 -0.67 5.96 -26.48 -0.16 -0.83 16 23 C -0.12 -0.66 5.69 -26.64 -0.15 -0.81 16 24 C -0.08 -0.53 4.42 -27.27 -0.12 -0.65 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 3.12 6.61 -40.82 -0.27 2.85 16 35 H 0.07 0.73 7.77 -51.93 -0.40 0.33 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 38 H 0.10 0.59 7.26 -51.93 -0.38 0.21 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.35 8.06 -51.93 -0.42 -0.07 16 41 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 43 H 0.06 0.34 7.11 -51.93 -0.37 -0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.38 7.13 -51.93 -0.37 0.01 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -33.56 363.07 -10.35 -43.92 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -8.49 Total: -2.92 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.81 Total: -18.43 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.42 Total: -35.09 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.56 -10.35 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927428430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.565 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds