Wall clock time and date at job start Tue Mar 31 2020 01:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48500 * 109.47118 * 239.99992 * 3 2 1 5 5 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47480 * 119.99840 * 3 2 1 7 7 C 1.37878 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99804 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00074 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46970 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47005 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.46960 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00070 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99812 * 179.97438 * 13 12 11 16 16 C 1.46499 * 120.00078 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47505 * 180.02562 * 16 15 13 18 18 C 1.52304 * 115.91593 * 248.17407 * 17 16 15 19 19 C 1.52069 * 115.31627 * 180.08682 * 17 16 15 20 20 H 1.08997 * 117.25658 * 359.63841 * 19 17 16 21 21 C 1.52713 * 120.52457 * 211.01350 * 19 17 16 22 22 C 1.53191 * 110.27282 * 21.42667 * 21 19 17 23 23 C 1.53301 * 108.42152 * 305.66249 * 22 21 19 24 24 C 1.52078 * 114.63788 * 34.41692 * 17 16 15 25 25 H 0.97005 * 120.00218 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47528 * 60.00319 * 9 7 2 27 27 H 1.09003 * 109.47520 * 299.99936 * 9 7 2 28 28 H 1.09004 * 109.46949 * 60.00324 * 10 9 7 29 29 H 1.08996 * 109.47215 * 299.99692 * 10 9 7 30 30 H 1.08998 * 109.46893 * 59.99960 * 11 10 9 31 31 H 1.08999 * 109.47209 * 300.00438 * 11 10 9 32 32 H 1.08996 * 109.47291 * 59.99627 * 12 11 10 33 33 H 1.09003 * 109.46775 * 300.00305 * 12 11 10 34 34 H 0.96999 * 120.00157 * 359.97438 * 15 13 12 35 35 H 1.08998 * 109.46919 * 59.99799 * 16 15 13 36 36 H 1.08999 * 109.46963 * 300.00412 * 16 15 13 37 37 H 1.09006 * 117.53539 * 1.58340 * 18 17 16 38 38 H 1.09000 * 117.53917 * 146.76070 * 18 17 16 39 39 H 1.08994 * 109.35680 * 141.67938 * 21 19 17 40 40 H 1.09006 * 109.35677 * 261.39932 * 21 19 17 41 41 H 1.09001 * 109.88664 * 185.86748 * 22 21 19 42 42 H 1.09004 * 109.50709 * 65.22825 * 22 21 19 43 43 H 1.09002 * 109.61781 * 314.48032 * 23 22 21 44 44 H 1.08998 * 109.61503 * 194.12173 * 23 22 21 45 45 H 1.08995 * 109.26765 * 45.35851 * 24 17 16 46 46 H 1.09004 * 109.26550 * 285.89547 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4802 -4.9872 0.0033 12 6 2.4744 -6.1501 0.0037 13 6 1.7209 -7.4551 0.0048 14 8 0.5081 -7.4551 0.0048 15 7 2.3948 -8.6223 0.0048 16 6 1.6623 -9.8910 0.0054 17 6 2.6565 -11.0540 0.0059 18 6 2.7019 -11.8914 -1.2654 19 6 2.0342 -12.4415 0.0045 20 1 0.9458 -12.5004 0.0093 21 6 2.7446 -13.6109 0.6825 22 6 3.7468 -13.0941 1.7194 23 6 4.6897 -12.1018 1.0293 24 6 3.9352 -10.7945 0.7871 25 1 -0.4851 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8880 27 1 0.6247 -2.5563 0.8920 28 1 2.8726 -3.6039 0.8910 29 1 2.8712 -3.6048 -0.8890 30 1 0.8526 -5.0455 -0.8860 31 1 0.8545 -5.0442 0.8940 32 1 3.1018 -6.0915 0.8931 33 1 3.1005 -6.0931 -0.8868 34 1 3.3648 -8.6223 0.0037 35 1 1.0353 -9.9489 -0.8843 36 1 1.0360 -9.9485 0.8956 37 1 2.0517 -11.5941 -2.0882 38 1 3.6630 -12.3162 -1.5550 39 1 2.0077 -14.2437 1.1769 40 1 3.2765 -14.1950 -0.0687 41 1 4.3233 -13.9257 2.1246 42 1 3.2108 -12.5905 2.5241 43 1 5.0218 -12.5146 0.0767 44 1 5.5531 -11.9132 1.6673 45 1 3.6851 -10.3406 1.7460 46 1 4.5700 -10.1123 0.2216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927428430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:38 Heat of formation + Delta-G solvation = -78.805849 kcal Electronic energy + Delta-G solvation = -21140.184440 eV Core-core repulsion = 18027.670436 eV Total energy + Delta-G solvation = -3112.514004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31349 -40.27095 -36.69395 -35.82044 -34.60744 -34.04053 -31.88942 -31.30000 -28.36986 -26.74999 -25.64203 -24.04503 -22.83751 -21.94369 -21.60700 -21.13378 -19.12229 -18.41648 -18.10413 -17.16413 -16.97366 -16.52201 -16.12019 -15.78305 -15.18418 -14.99549 -14.82875 -14.69962 -14.52434 -14.33441 -14.05501 -13.60674 -13.58353 -13.27149 -13.04476 -12.79748 -12.72179 -12.37303 -12.22942 -12.15411 -12.12057 -11.83821 -11.70508 -11.37139 -11.35617 -11.21302 -11.18239 -10.89770 -10.66041 -10.53968 -10.48572 -10.03674 -8.18013 -6.30393 1.40569 1.44877 1.52677 1.64976 2.16080 2.42588 2.75835 3.14363 3.51687 3.74298 3.80604 3.87345 3.88551 4.06511 4.14812 4.16414 4.29933 4.35163 4.49189 4.59379 4.63394 4.66591 4.70082 4.78399 4.82170 4.84752 4.89133 4.91412 5.00901 5.04912 5.19712 5.21125 5.26830 5.28268 5.33932 5.35980 5.36357 5.41340 5.48134 5.52594 5.57817 5.78587 5.88466 6.25702 6.55499 6.87902 7.27217 7.39063 8.94030 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.046734 B = 0.002233 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.987964 B =12537.756644 C =12866.293973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.128 4.128 13 C 0.509 3.491 14 O -0.591 6.591 15 N -0.715 5.715 16 C 0.154 3.846 17 C -0.124 4.124 18 C -0.167 4.167 19 C -0.140 4.140 20 H 0.098 0.902 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.085 4.085 25 H 0.263 0.737 26 H -0.016 1.016 27 H -0.016 1.016 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.148 -30.270 0.868 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.167 4.167 13 C 0.297 3.703 14 O -0.472 6.472 15 N -0.368 5.368 16 C 0.030 3.970 17 C -0.124 4.124 18 C -0.204 4.204 19 C -0.159 4.159 20 H 0.116 0.884 21 C -0.125 4.125 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.150 -30.183 0.864 32.548 hybrid contribution -0.222 1.079 -0.067 1.104 sum 11.928 -29.104 0.797 31.463 Atomic orbital electron populations 1.70133 1.08086 1.27809 1.51826 1.26122 0.95816 1.03820 0.94807 0.85416 0.78143 0.77600 0.79364 1.18882 1.21114 1.18863 1.21725 0.93759 0.92188 1.50312 0.91507 1.19063 0.94717 0.93864 0.94271 1.21449 0.97798 0.92655 1.01369 1.21248 0.97520 0.93730 1.00958 1.21673 0.98924 0.89386 1.06750 1.21249 0.87770 0.86813 0.74477 1.90694 1.16593 1.88458 1.51417 1.45942 1.11192 1.04666 1.75047 1.20908 0.93506 0.81686 1.00907 1.21161 0.97945 0.90930 1.02393 1.23362 1.02981 1.03252 0.90784 1.22355 0.99086 0.93484 1.00944 0.88394 1.21122 0.98008 0.95222 0.98137 1.21643 0.97269 0.99216 0.97743 1.21585 0.97976 0.94744 1.01233 1.20832 0.93327 0.98683 0.99353 0.92866 0.99781 0.99763 0.91990 0.92005 0.93970 0.93948 0.86240 0.86301 0.74526 0.92770 0.92834 0.89203 0.87279 0.91263 0.90846 0.90847 0.92522 0.91312 0.90761 0.91543 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.29 21.45 0.28 -59.35 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.72 9.11 25.60 0.23 -31.48 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 11 C -0.10 -3.56 4.50 30.60 0.14 -3.43 16 12 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 13 C 0.51 14.28 7.83 87.66 0.69 14.97 16 14 O -0.59 -22.95 15.98 -3.03 -0.05 -23.00 16 15 N -0.71 -13.95 5.33 -463.08 -2.47 -16.42 16 16 C 0.15 3.01 5.64 86.38 0.49 3.50 16 17 C -0.12 -1.65 2.43 -53.03 -0.13 -1.78 16 18 C -0.17 -1.99 9.24 30.58 0.28 -1.71 16 19 C -0.14 -1.75 5.80 -10.98 -0.06 -1.81 16 20 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.09 -0.84 5.84 30.56 0.18 -0.67 16 22 C -0.12 -1.11 5.96 30.76 0.18 -0.93 16 23 C -0.12 -1.00 5.69 30.65 0.17 -0.82 16 24 C -0.08 -0.88 4.42 30.25 0.13 -0.74 16 25 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.42 5.36 6.61 -92.71 -0.61 4.74 16 35 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 36 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.18 7.95 -2.38 -0.02 1.16 16 38 H 0.11 1.05 7.26 -2.39 -0.02 1.03 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.61 8.06 -2.38 -0.02 0.59 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 0.63 8.05 -2.39 -0.02 0.61 16 43 H 0.07 0.53 7.11 -2.39 -0.02 0.52 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 46 H 0.08 0.63 7.13 -2.38 -0.02 0.62 16 Total: -1.00 -75.12 363.07 3.35 -71.77 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.32 Total: 10.51 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.24 Total: -30.63 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -2.18 Total: -75.77 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.12 3.35 -71.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927428430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.036 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds