Wall clock time and date at job start Tue Mar 31 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 115.56539 * 2 1 4 4 C 1.53076 * 117.50988 * 214.29676 * 2 1 3 5 5 C 1.53004 * 117.49278 * 145.03948 * 4 2 1 6 6 C 1.52996 * 117.53413 * 359.97438 * 4 2 1 7 7 C 1.52998 * 59.98612 * 252.52244 * 4 2 1 8 8 C 1.52992 * 117.50491 * 252.49998 * 7 4 2 9 9 C 1.50703 * 117.49602 * 107.49838 * 7 4 2 10 10 O 1.21283 * 120.00008 * 33.64414 * 9 7 4 11 11 N 1.34773 * 119.99973 * 213.64135 * 9 7 4 12 12 C 1.46503 * 119.99931 * 184.24570 * 11 9 7 13 13 C 1.53007 * 109.47145 * 184.71787 * 12 11 9 14 14 C 1.50703 * 115.54845 * 54.91461 * 13 12 11 15 15 H 1.07998 * 119.99675 * 215.40244 * 14 13 12 16 16 C 1.37877 * 119.99974 * 35.12188 * 14 13 12 17 17 N 1.31514 * 119.99871 * 4.25895 * 16 14 13 18 18 Si 1.86801 * 119.99798 * 184.25727 * 16 14 13 19 19 H 1.48492 * 109.47300 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46992 * 120.00408 * 18 16 14 21 21 H 1.48498 * 109.46839 * 239.99807 * 18 16 14 22 22 C 1.52999 * 117.49911 * 200.58511 * 13 12 11 23 23 C 1.52997 * 117.49924 * 269.24534 * 13 12 11 24 24 H 1.08997 * 109.46875 * 284.17876 * 1 2 3 25 25 H 1.09003 * 109.46597 * 44.17495 * 1 2 3 26 26 H 1.08992 * 109.47412 * 164.17029 * 1 2 3 27 27 H 1.09002 * 109.47373 * 199.33083 * 3 2 1 28 28 H 1.09000 * 109.47525 * 319.33009 * 3 2 1 29 29 H 1.09005 * 109.47025 * 79.33513 * 3 2 1 30 30 H 1.09003 * 109.46870 * 135.15689 * 5 4 2 31 31 H 1.08999 * 109.47298 * 255.15560 * 5 4 2 32 32 H 1.09000 * 109.47394 * 15.16015 * 5 4 2 33 33 H 1.09000 * 109.47455 * 351.16600 * 6 4 2 34 34 H 1.08999 * 109.47234 * 111.16870 * 6 4 2 35 35 H 1.09002 * 109.47425 * 231.16833 * 6 4 2 36 36 H 1.09008 * 109.47311 * 275.88809 * 8 7 4 37 37 H 1.09004 * 109.47142 * 35.87878 * 8 7 4 38 38 H 1.08992 * 109.47539 * 155.88851 * 8 7 4 39 39 H 0.96999 * 120.00579 * 4.24899 * 11 9 7 40 40 H 1.08999 * 109.47010 * 64.71918 * 12 11 9 41 41 H 1.08997 * 109.47242 * 304.71701 * 12 11 9 42 42 H 0.97008 * 119.99560 * 184.95759 * 17 16 14 43 43 H 1.09006 * 117.49642 * 215.00382 * 22 13 12 44 44 H 1.08998 * 117.49925 * 0.02562 * 22 13 12 45 45 H 1.09000 * 117.49817 * 359.97438 * 23 13 12 46 46 H 1.08998 * 117.49741 * 144.97042 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3801 0.0000 4 6 2.2370 -1.1216 -0.7650 5 6 3.5498 -0.7765 -1.4710 6 6 1.3604 -2.1579 -1.4711 7 6 2.2364 -1.1211 0.7650 8 6 3.5486 -0.7760 1.4719 9 6 1.3719 -2.1407 1.4608 10 8 1.2073 -3.2354 0.9654 11 7 0.7817 -1.8360 2.6335 12 6 0.0179 -2.8562 3.3560 13 6 -0.6405 -2.2255 4.5847 14 6 -1.5068 -1.0227 4.3125 15 1 -1.5416 -0.2104 5.0234 16 6 -2.2503 -0.9568 3.1533 17 7 -2.2693 -1.9784 2.3253 18 14 -3.2306 0.5836 2.7588 19 1 -3.0423 1.5812 3.8424 20 1 -2.7576 1.1554 1.4725 21 1 -4.6707 0.2388 2.6474 22 6 -1.0679 -3.1624 5.7163 23 6 0.1459 -2.2473 5.8969 24 1 -0.3633 0.2517 0.9963 25 1 -0.3632 0.7371 -0.7162 26 1 -0.3634 -0.9886 -0.2803 27 1 3.2218 1.2895 -0.3402 28 1 1.6439 2.0443 -0.6697 29 1 2.1754 1.7900 1.0100 30 1 4.2839 -1.5582 -1.2755 31 1 3.3763 -0.7014 -2.5445 32 1 3.9246 0.1759 -1.0960 33 1 0.3201 -2.0124 -1.1804 34 1 1.4560 -2.0398 -2.5504 35 1 1.6807 -3.1599 -1.1855 36 1 4.1672 -1.6704 1.5468 37 1 4.0794 -0.0140 0.9011 38 1 3.3343 -0.3978 2.4714 39 1 0.8626 -0.9412 2.9992 40 1 0.6881 -3.6553 3.6728 41 1 -0.7515 -3.2655 2.7014 42 1 -2.7332 -1.9061 1.4764 43 1 -1.9756 -2.9088 6.2639 44 1 -0.8796 -4.2280 5.5856 45 1 1.1321 -2.7114 5.8850 46 1 0.0370 -1.3915 6.5632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935781967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:29 Heat of formation + Delta-G solvation = -9.070107 kcal Electronic energy + Delta-G solvation = -24010.774805 eV Core-core repulsion = 20901.284770 eV Total energy + Delta-G solvation = -3109.490035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -41.72242 -39.28742 -38.13084 -34.71348 -34.10675 -31.93335 -31.58716 -29.90060 -27.83854 -27.17062 -26.91384 -26.47306 -23.05572 -22.57178 -21.10665 -19.80406 -18.71293 -18.14413 -17.07031 -16.80128 -16.60071 -16.29531 -15.79913 -15.48604 -15.15615 -14.81599 -14.55963 -14.35349 -13.98927 -13.57409 -13.54061 -13.31902 -13.27008 -13.13425 -12.95485 -12.87929 -12.74898 -12.61460 -12.53308 -12.52608 -12.46296 -12.25955 -12.04165 -11.45482 -11.32875 -11.00688 -10.73296 -10.63179 -10.31971 -10.14067 -9.94862 -9.55755 -7.94890 -6.16750 1.37903 1.44285 1.51654 1.93059 2.41502 2.46200 2.76270 3.10002 3.59933 3.65586 3.68089 3.83001 4.13735 4.20731 4.21995 4.28472 4.54274 4.57426 4.67511 4.74521 4.76108 4.78758 4.81724 4.83466 4.88206 4.93805 4.95060 4.96921 5.03943 5.10555 5.13631 5.15692 5.16157 5.23160 5.32481 5.34966 5.44569 5.48206 5.52631 5.61524 5.72766 5.96426 6.00151 6.39476 6.81110 7.06296 7.48054 7.66081 8.94288 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.007327 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.104560 B = 3820.361703 C = 4541.358926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.088 4.088 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.157 4.157 8 C -0.103 4.103 9 C 0.540 3.460 10 O -0.596 6.596 11 N -0.678 5.678 12 C 0.174 3.826 13 C 0.012 3.988 14 C -0.502 4.502 15 H 0.055 0.945 16 C 0.046 3.954 17 N -0.882 5.882 18 Si 0.931 3.069 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.293 1.293 22 C -0.201 4.201 23 C -0.185 4.185 24 H 0.044 0.956 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.012 0.988 41 H 0.079 0.921 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.656 7.310 -5.601 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 C -0.173 4.173 4 C -0.089 4.089 5 C -0.170 4.170 6 C -0.174 4.174 7 C -0.160 4.160 8 C -0.160 4.160 9 C 0.327 3.673 10 O -0.479 6.479 11 N -0.324 5.324 12 C 0.050 3.950 13 C 0.011 3.989 14 C -0.540 4.540 15 H 0.073 0.927 16 C -0.156 4.156 17 N -0.519 5.519 18 Si 0.758 3.242 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.220 1.220 22 C -0.240 4.240 23 C -0.222 4.222 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.234 0.766 40 H 0.030 0.970 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.400 6.450 -6.057 14.431 hybrid contribution -1.350 0.399 0.309 1.441 sum 10.050 6.850 -5.748 13.452 Atomic orbital electron populations 1.21431 0.93728 1.01331 1.01364 1.21876 0.93574 0.92282 1.01776 1.21524 1.01286 0.91738 1.02763 1.21849 0.98951 0.97952 0.90103 1.21504 0.92879 1.02491 1.00128 1.21429 0.98363 0.98139 0.99449 1.21806 0.99111 0.99866 0.95226 1.21279 0.92318 1.02132 1.00250 1.19990 0.79540 0.87434 0.80360 1.90565 1.64965 1.26263 1.66068 1.45582 1.50335 1.14977 1.21462 1.20677 0.92519 0.88286 0.93557 1.19257 0.97362 0.96289 0.85960 1.20650 1.25071 1.02590 1.05655 0.92693 1.25411 0.96267 0.97592 0.96345 1.70031 1.42528 1.29806 1.09504 0.85930 0.78450 0.81190 0.78628 1.19204 1.19801 1.21975 1.22935 0.98124 0.95644 1.07300 1.22933 0.94591 1.01743 1.02954 0.93675 0.91276 0.93912 0.89210 0.91242 0.91599 0.91892 0.90907 0.89474 0.94271 0.91116 0.93113 0.92502 0.88553 0.91765 0.76623 0.97025 0.90318 0.93567 0.90637 0.90906 0.89775 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.67 71.98 0.62 -3.70 16 2 C -0.09 -2.73 2.70 -52.16 -0.14 -2.87 16 3 C -0.12 -2.39 8.56 71.98 0.62 -1.78 16 4 C -0.09 -2.52 2.70 -52.16 -0.14 -2.66 16 5 C -0.11 -2.24 8.59 71.98 0.62 -1.62 16 6 C -0.12 -3.93 8.11 71.98 0.58 -3.35 16 7 C -0.16 -4.98 2.48 -52.93 -0.13 -5.11 16 8 C -0.10 -2.49 8.73 71.98 0.63 -1.86 16 9 C 0.54 22.83 5.64 87.66 0.49 23.33 16 10 O -0.60 -29.83 14.31 -3.04 -0.04 -29.87 16 11 N -0.68 -29.38 5.28 -463.04 -2.44 -31.82 16 12 C 0.17 8.43 4.68 86.38 0.40 8.84 16 13 C 0.01 0.56 1.98 -52.93 -0.10 0.46 16 14 C -0.50 -25.39 8.46 25.60 0.22 -25.17 16 15 H 0.05 2.78 7.82 -2.91 -0.02 2.75 16 16 C 0.05 2.36 5.26 84.65 0.44 2.80 16 17 N -0.88 -47.85 10.49 21.45 0.22 -47.62 16 18 Si 0.93 41.12 29.54 68.60 2.03 43.14 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 22 C -0.20 -8.80 9.96 30.62 0.30 -8.49 16 23 C -0.19 -7.43 9.93 30.62 0.30 -7.12 16 24 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.77 5.02 -2.39 -0.01 1.75 16 27 H 0.09 1.39 4.42 -2.39 -0.01 1.38 16 28 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.26 8.03 -2.39 -0.02 1.24 16 32 H 0.09 1.33 4.44 -2.39 -0.01 1.32 16 33 H 0.04 1.52 5.12 -2.39 -0.01 1.51 16 34 H 0.07 1.93 8.01 -2.39 -0.02 1.92 16 35 H 0.05 1.94 6.81 -2.39 -0.02 1.93 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.10 1.71 5.33 -2.38 -0.01 1.70 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.40 16.55 8.13 -92.71 -0.75 15.79 16 40 H 0.01 0.56 8.09 -2.39 -0.02 0.54 16 41 H 0.08 4.48 5.86 -2.39 -0.01 4.46 16 42 H 0.25 13.70 8.32 -92.70 -0.77 12.93 16 43 H 0.08 3.31 8.14 -2.38 -0.02 3.29 16 44 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 46 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -61.05 352.32 4.70 -56.35 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: 0.21 Total: 38.13 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.72 Total: -28.31 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.22 Total: -79.45 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.04 Total: -29.87 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -61.05 4.70 -56.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935781967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.281 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds