Wall clock time and date at job start Tue Mar 31 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29437 * 117.96234 * 2 1 4 4 C 1.50694 * 117.96701 * 0.51058 * 3 2 1 5 5 C 1.50078 * 124.07333 * 180.49078 * 3 2 1 6 6 C 1.53016 * 110.14500 * 342.86677 * 5 3 2 7 7 C 1.53004 * 109.81473 * 169.22427 * 6 5 3 8 8 C 1.50695 * 109.64518 * 289.74891 * 6 5 3 9 9 O 1.21289 * 120.00121 * 109.03719 * 8 6 5 10 10 N 1.34773 * 120.00410 * 289.04092 * 8 6 5 11 11 C 1.46498 * 119.99781 * 2.80393 * 10 8 6 12 12 C 1.46505 * 120.00355 * 182.80635 * 10 8 6 13 13 H 1.08999 * 109.47030 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.47210 * 120.00013 * 12 10 8 15 15 C 1.50703 * 109.46924 * 240.00172 * 12 10 8 16 16 H 1.07999 * 119.99647 * 335.09048 * 15 12 10 17 17 C 1.37877 * 120.00142 * 155.09539 * 15 12 10 18 18 N 1.31511 * 119.99463 * 355.29349 * 17 15 12 19 19 Si 1.86797 * 120.00051 * 175.29251 * 17 15 12 20 20 H 1.48498 * 109.47227 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46875 * 120.00009 * 19 17 15 22 22 H 1.48500 * 109.46777 * 239.99980 * 19 17 15 23 23 C 1.53394 * 108.44089 * 49.43739 * 6 5 3 24 24 C 1.50069 * 117.96040 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.47330 * 275.42287 * 1 2 3 26 26 H 1.09002 * 109.47215 * 35.42442 * 1 2 3 27 27 H 1.09002 * 109.47366 * 155.42482 * 1 2 3 28 28 H 1.09001 * 109.46845 * 63.76340 * 4 3 2 29 29 H 1.08994 * 109.47471 * 183.76248 * 4 3 2 30 30 H 1.09003 * 109.47078 * 303.77028 * 4 3 2 31 31 H 1.08997 * 109.35459 * 222.65989 * 5 3 2 32 32 H 1.08996 * 109.35858 * 103.07520 * 5 3 2 33 33 H 1.09007 * 109.47225 * 180.52778 * 7 6 5 34 34 H 1.08996 * 109.47052 * 300.52563 * 7 6 5 35 35 H 1.08997 * 109.47209 * 60.52783 * 7 6 5 36 36 H 1.09002 * 109.47308 * 265.64814 * 11 10 8 37 37 H 1.09001 * 109.47270 * 25.64471 * 11 10 8 38 38 H 1.09002 * 109.47301 * 145.64491 * 11 10 8 39 39 H 1.09002 * 109.47183 * 295.21261 * 14 12 10 40 40 H 1.09001 * 109.47277 * 55.21390 * 14 12 10 41 41 H 1.08999 * 109.47014 * 175.21319 * 14 12 10 42 42 H 0.96995 * 120.00775 * 5.28754 * 18 17 15 43 43 H 1.08999 * 109.63883 * 52.24781 * 23 6 5 44 44 H 1.09005 * 109.64277 * 172.66607 * 23 6 5 45 45 H 1.09003 * 109.35544 * 42.64061 * 24 2 1 46 46 H 1.08998 * 109.24848 * 282.98925 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1139 1.1433 0.0000 4 6 1.2697 2.3915 0.0119 5 6 3.6061 1.3030 -0.0106 6 6 4.2794 -0.0075 0.4022 7 6 5.7835 0.0751 0.1339 8 6 4.0396 -0.2604 1.8683 9 8 3.2918 -1.1498 2.2160 10 7 4.6560 0.5018 2.7933 11 6 5.5107 1.6151 2.3736 12 6 4.4712 0.2170 4.2185 13 1 3.8076 -0.6398 4.3347 14 6 5.8263 -0.0968 4.8557 15 6 3.8635 1.4181 4.8961 16 1 3.9988 2.4026 4.4731 17 6 3.1350 1.2602 6.0559 18 7 2.8919 0.0541 6.5206 19 14 2.4932 2.7592 6.9672 20 1 2.9003 3.9903 6.2435 21 1 1.0115 2.6958 7.0427 22 1 3.0583 2.7831 8.3403 23 6 3.6701 -1.1473 -0.4240 24 6 2.2106 -1.3255 -0.0006 25 1 -0.3634 0.0971 1.0231 26 1 -0.3634 0.8374 -0.5957 27 1 -0.3634 -0.9346 -0.4274 28 1 0.6972 2.4341 0.9384 29 1 1.9150 3.2672 -0.0570 30 1 0.5863 2.3760 -0.8371 31 1 3.8901 2.0907 0.6873 32 1 3.9330 1.5768 -1.0137 33 1 6.2560 -0.8643 0.4212 34 1 5.9538 0.2579 -0.9270 35 1 6.2122 0.8904 0.7166 36 1 6.5465 1.2791 2.3234 37 1 5.1945 1.9656 1.3911 38 1 5.4273 2.4289 3.0939 39 1 6.2269 -1.0142 4.4245 40 1 6.5163 0.7254 4.6657 41 1 5.7013 -0.2250 5.9309 42 1 3.2886 -0.7200 6.0916 43 1 3.7161 -0.8967 -1.4838 44 1 4.2232 -2.0687 -0.2411 45 1 1.7118 -1.9990 -0.6975 46 1 2.1748 -1.7518 1.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121186437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:39 Heat of formation + Delta-G solvation = -34.730446 kcal Electronic energy + Delta-G solvation = -24154.477191 eV Core-core repulsion = 21043.874440 eV Total energy + Delta-G solvation = -3110.602751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.03558 -39.07174 -37.27579 -35.98339 -34.63138 -32.77656 -31.21669 -29.62856 -27.99982 -27.85781 -26.91648 -25.50035 -24.42989 -23.65883 -21.97501 -19.95374 -18.77886 -18.46523 -17.46728 -16.37655 -16.21655 -15.88442 -15.69938 -15.56387 -15.43713 -15.01911 -14.66971 -14.59036 -14.23730 -13.75429 -13.54871 -13.45971 -13.30033 -13.18722 -13.14759 -13.04913 -12.92358 -12.73588 -12.62852 -12.56454 -12.45992 -12.18683 -12.09332 -11.95642 -11.90292 -11.07141 -11.01614 -10.87958 -10.53155 -10.05936 -9.29340 -9.19589 -8.62588 -6.37271 1.37686 1.49459 1.58797 1.73646 1.87976 2.36791 2.56281 3.19121 3.54482 3.66644 3.72559 4.10059 4.17019 4.25368 4.34049 4.40375 4.51393 4.55046 4.59259 4.62304 4.65876 4.66303 4.68232 4.73565 4.79155 4.83483 4.84171 4.90711 4.94796 4.96603 5.05453 5.09235 5.14102 5.18152 5.20005 5.29300 5.30166 5.36857 5.53822 5.81825 5.89488 5.92925 6.22736 6.26950 6.52281 6.86854 7.41894 7.56220 8.72979 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016550 B = 0.006910 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.409654 B = 4050.946323 C = 4700.707203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.133 4.133 3 C -0.157 4.157 4 C -0.111 4.111 5 C -0.069 4.069 6 C -0.073 4.073 7 C -0.160 4.160 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.594 5.594 11 C 0.063 3.937 12 C 0.239 3.761 13 H 0.013 0.987 14 C -0.129 4.129 15 C -0.602 4.602 16 H 0.058 0.942 17 C -0.031 4.031 18 N -0.937 5.937 19 Si 1.119 2.881 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.277 1.277 23 C -0.084 4.084 24 C -0.109 4.109 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.188 5.352 -17.561 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.133 4.133 3 C -0.157 4.157 4 C -0.167 4.167 5 C -0.105 4.105 6 C -0.076 4.076 7 C -0.217 4.217 8 C 0.296 3.704 9 O -0.474 6.474 10 N -0.324 5.324 11 C -0.078 4.078 12 C 0.137 3.863 13 H 0.031 0.969 14 C -0.188 4.188 15 C -0.640 4.640 16 H 0.076 0.924 17 C -0.229 4.229 18 N -0.575 5.575 19 Si 0.940 3.060 20 H -0.188 1.188 21 H -0.215 1.215 22 H -0.202 1.202 23 C -0.122 4.122 24 C -0.145 4.145 25 H 0.061 0.939 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.917 5.387 -16.083 17.211 hybrid contribution 0.587 -1.155 -0.482 1.383 sum 3.505 4.232 -16.565 17.452 Atomic orbital electron populations 1.20960 0.92510 1.03006 1.00963 1.20857 0.96248 0.94889 1.01298 1.20845 0.95992 0.95133 1.03781 1.20865 0.99280 0.95280 1.01317 1.20653 0.91333 0.95044 1.03469 1.20860 0.98985 0.98387 0.89373 1.22406 0.90973 1.03603 1.04701 1.21324 0.78785 0.80891 0.89416 1.90436 1.38609 1.35591 1.82731 1.48103 1.46947 1.30847 1.06457 1.22421 0.94236 0.89354 1.01827 1.18713 0.93396 0.96155 0.78079 0.96938 1.21941 0.98224 0.99267 0.99323 1.22412 1.36771 0.94160 1.10667 0.92368 1.27258 0.94734 1.03911 0.97040 1.70829 1.43381 0.98978 1.44268 0.82934 0.75894 0.71750 0.75375 1.18841 1.21540 1.20245 1.21415 0.94848 0.96616 0.99337 1.20877 0.95265 0.95214 1.03152 0.93929 0.89847 0.91715 0.93898 0.91112 0.90022 0.90242 0.86708 0.93228 0.88564 0.89111 0.91043 0.87726 0.92137 0.95073 0.91768 0.94686 0.93470 0.88858 0.92481 0.91284 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.38 9.17 71.24 0.65 -2.72 16 2 C -0.13 -4.28 5.60 -15.09 -0.08 -4.37 16 3 C -0.16 -4.66 5.56 -15.09 -0.08 -4.75 16 4 C -0.11 -2.81 8.67 71.23 0.62 -2.19 16 5 C -0.07 -1.75 4.07 29.66 0.12 -1.63 16 6 C -0.07 -2.12 0.51 -52.79 -0.03 -2.15 16 7 C -0.16 -3.45 8.04 71.98 0.58 -2.87 16 8 C 0.51 21.28 5.86 87.66 0.51 21.79 16 9 O -0.59 -30.62 12.15 -3.06 -0.04 -30.66 16 10 N -0.59 -25.24 2.75 -826.78 -2.27 -27.51 16 11 C 0.06 1.97 7.31 127.77 0.93 2.90 16 12 C 0.24 12.50 2.36 44.24 0.10 12.60 16 13 H 0.01 0.79 5.43 -2.39 -0.01 0.78 16 14 C -0.13 -5.93 9.25 71.98 0.67 -5.27 16 15 C -0.60 -33.40 8.17 25.60 0.21 -33.19 16 16 H 0.06 3.11 6.59 -2.91 -0.02 3.09 16 17 C -0.03 -1.80 5.45 84.66 0.46 -1.33 16 18 N -0.94 -59.36 13.62 21.45 0.29 -59.06 16 19 Si 1.12 50.83 29.91 68.60 2.05 52.88 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 C -0.08 -2.38 4.76 30.73 0.15 -2.24 16 24 C -0.11 -3.64 5.13 29.65 0.15 -3.48 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.96 6.09 -2.39 -0.01 1.94 16 27 H 0.06 1.67 7.98 -2.39 -0.02 1.65 16 28 H 0.04 1.26 8.04 -2.39 -0.02 1.24 16 29 H 0.07 1.54 7.93 -2.39 -0.02 1.52 16 30 H 0.08 1.70 6.82 -2.39 -0.02 1.68 16 31 H 0.08 2.09 5.40 -2.39 -0.01 2.08 16 32 H 0.11 2.08 8.11 -2.39 -0.02 2.06 16 33 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.82 3.68 -2.39 -0.01 1.81 16 36 H 0.07 1.86 7.17 -2.39 -0.02 1.84 16 37 H 0.10 2.59 3.19 -2.39 -0.01 2.59 16 38 H 0.06 2.05 6.59 -2.39 -0.02 2.03 16 39 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 2.59 7.51 -2.39 -0.02 2.58 16 41 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.25 16.71 6.66 -92.71 -0.62 16.09 16 43 H 0.09 2.03 8.12 -2.39 -0.02 2.01 16 44 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 46 H 0.08 3.57 5.06 -12.35 -0.06 3.51 16 Total: -1.00 -74.17 336.96 6.06 -68.10 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 1.07 Total: 25.17 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.96 Total: -28.91 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.98 Total: -86.58 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.04 Total: -30.66 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -74.17 6.06 -68.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121186437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.372 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds