Wall clock time and date at job start Tue Mar 31 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99615 * 2 1 4 4 N 1.46505 * 109.46884 * 125.00192 * 3 2 1 5 5 C 1.46498 * 120.00117 * 273.86117 * 4 3 2 6 6 C 1.50708 * 109.46995 * 279.97545 * 5 4 3 7 7 H 1.07999 * 119.99639 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99813 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99831 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00158 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47390 * 89.99629 * 10 8 6 12 12 H 1.48500 * 109.47116 * 209.99883 * 10 8 6 13 13 H 1.48501 * 109.47115 * 329.99693 * 10 8 6 14 14 C 1.34779 * 119.99764 * 93.86144 * 4 3 2 15 15 O 1.21273 * 120.00219 * 5.47243 * 14 4 3 16 16 C 1.50697 * 119.99716 * 185.46966 * 14 4 3 17 17 C 1.53005 * 115.55187 * 60.37502 * 16 14 4 18 18 C 1.53003 * 117.50234 * 274.70663 * 16 14 4 19 19 C 1.53002 * 117.49357 * 359.97438 * 18 16 14 20 20 C 1.52999 * 117.50180 * 145.01917 * 18 16 14 21 21 C 1.52997 * 117.50303 * 206.04680 * 16 14 4 22 22 C 1.52998 * 117.50351 * 214.98265 * 21 16 14 23 23 C 1.53003 * 117.49679 * 359.97433 * 21 16 14 24 24 H 1.08001 * 120.00359 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00544 * 0.02562 * 1 2 3 26 26 H 1.07992 * 120.00182 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47626 * 5.00341 * 3 2 1 28 28 H 1.09009 * 109.46912 * 244.99696 * 3 2 1 29 29 H 1.09000 * 109.46898 * 39.97158 * 5 4 3 30 30 H 1.08992 * 109.47251 * 159.97679 * 5 4 3 31 31 H 0.97000 * 119.99455 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47061 * 79.89260 * 17 16 14 33 33 H 1.08992 * 109.47379 * 199.89603 * 17 16 14 34 34 H 1.09003 * 109.46736 * 319.89901 * 17 16 14 35 35 H 1.09003 * 109.46774 * 76.01455 * 19 18 16 36 36 H 1.08998 * 109.46648 * 196.00486 * 19 18 16 37 37 H 1.08993 * 109.47756 * 316.00407 * 19 18 16 38 38 H 1.08997 * 109.46981 * 68.63334 * 20 18 16 39 39 H 1.09002 * 109.47191 * 188.63479 * 20 18 16 40 40 H 1.09006 * 109.46999 * 308.63714 * 20 18 16 41 41 H 1.09001 * 109.47282 * 69.24872 * 22 21 16 42 42 H 1.09004 * 109.47360 * 189.24880 * 22 21 16 43 43 H 1.09002 * 109.46804 * 309.25259 * 22 21 16 44 44 H 1.09009 * 109.46690 * 59.35319 * 23 21 16 45 45 H 1.09000 * 109.47610 * 179.35418 * 23 21 16 46 46 H 1.09001 * 109.47279 * 299.36340 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5347 1.7858 2.4466 6 6 2.5124 3.2924 2.4785 7 1 2.8100 3.8553 1.6062 8 6 2.1112 3.9518 3.6208 9 7 2.0922 5.2665 3.6488 10 14 1.5959 2.9779 5.1293 11 1 2.7821 2.7302 5.9876 12 1 0.5837 3.7493 5.8945 13 1 1.0122 1.6801 4.7050 14 6 4.2718 0.9390 0.9624 15 8 4.6784 0.6582 -0.1451 16 6 5.1956 0.8488 2.1496 17 6 4.7659 -0.1262 3.2476 18 6 5.9166 2.1270 2.5825 19 6 5.6449 3.3988 1.7765 20 6 6.1531 2.3320 4.0802 21 6 6.6955 1.0052 1.8912 22 6 7.6508 0.1749 2.7507 23 6 7.1427 1.2406 0.4471 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8499 -0.9352 -0.0004 27 1 1.3585 2.1317 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 1.5311 1.4036 2.6329 30 1 3.2129 1.4161 3.2156 31 1 1.8103 5.7304 4.4527 32 1 5.0319 -1.1422 2.9558 33 1 5.2721 0.1288 4.1785 34 1 3.6873 -0.0599 3.3905 35 1 4.6663 3.7969 2.0450 36 1 6.4121 4.1405 1.9986 37 1 5.6626 3.1652 0.7121 38 1 6.8818 1.6037 4.4359 39 1 6.5316 3.3394 4.2537 40 1 5.2142 2.1990 4.6178 41 1 7.5566 -0.8780 2.4852 42 1 8.6754 0.5034 2.5760 43 1 7.4011 0.3079 3.8034 44 1 6.6794 2.1512 0.0671 45 1 8.2273 1.3441 0.4148 46 1 6.8399 0.3944 -0.1697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141409005.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:34 Heat of formation + Delta-G solvation = 15.256390 kcal Electronic energy + Delta-G solvation = -24312.918493 eV Core-core repulsion = 21204.483334 eV Total energy + Delta-G solvation = -3108.435159 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51041 -37.74465 -35.50026 -33.43895 -32.23996 -30.54686 -30.22741 -28.60367 -28.09112 -25.81512 -25.53592 -25.03773 -22.60759 -20.81607 -19.45314 -17.55712 -17.34728 -17.00379 -15.75481 -15.56666 -15.11752 -14.64059 -14.36548 -14.04664 -13.77682 -13.63716 -13.16402 -12.74324 -12.57186 -12.48950 -12.24415 -11.95245 -11.90646 -11.74849 -11.46909 -11.43544 -11.41567 -11.25642 -11.14651 -11.05442 -10.91265 -10.86522 -10.55466 -10.21765 -9.98622 -9.52806 -9.32324 -9.03164 -8.93735 -8.70913 -8.42491 -7.70851 -6.19580 -4.17386 2.51952 3.16559 3.25396 3.27233 3.32083 3.84952 4.20583 4.28115 4.96348 5.05561 5.10435 5.12539 5.28853 5.42924 5.45576 5.52641 5.61605 5.81102 5.89002 5.95199 6.02202 6.07548 6.10662 6.11647 6.19300 6.22007 6.28645 6.32922 6.36503 6.41950 6.50332 6.54019 6.57299 6.65520 6.66782 6.77945 6.80029 6.89265 7.00720 7.02402 7.37313 7.44445 7.51598 8.16352 8.47471 8.82848 8.99552 9.40793 10.92505 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.009584 C = 0.006753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.493538 B = 2920.820780 C = 4145.566216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.141 3.859 4 N -0.582 5.582 5 C 0.198 3.802 6 C -0.528 4.528 7 H 0.082 0.918 8 C 0.079 3.921 9 N -0.891 5.891 10 Si 0.862 3.138 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.558 3.442 15 O -0.564 6.564 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.071 4.071 19 C -0.143 4.143 20 C -0.122 4.122 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.092 0.908 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.265 0.735 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -8.901 -0.409 10.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.175 4.175 3 C 0.018 3.982 4 N -0.311 5.311 5 C 0.077 3.923 6 C -0.566 4.566 7 H 0.100 0.900 8 C -0.124 4.124 9 N -0.528 5.528 10 Si 0.689 3.311 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.346 3.654 15 O -0.444 6.444 16 C -0.142 4.142 17 C -0.177 4.177 18 C -0.071 4.071 19 C -0.199 4.199 20 C -0.179 4.179 21 C -0.103 4.103 22 C -0.174 4.174 23 C -0.169 4.169 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.207 -8.862 -0.852 10.314 hybrid contribution -0.534 -0.394 1.010 1.208 sum 4.674 -9.256 0.158 10.370 Atomic orbital electron populations 1.23787 0.95807 1.01588 1.01822 1.23394 0.96103 0.99265 0.98782 1.20427 0.92382 0.94702 0.90641 1.47804 1.08846 1.62713 1.11737 1.20072 0.95465 0.96377 0.80353 1.21280 1.45294 0.89119 1.00891 0.90048 1.24787 0.94863 0.94618 0.98148 1.69882 1.47296 1.06870 1.28791 0.87063 0.79251 0.80850 0.83972 1.19738 1.21057 1.18942 1.19407 0.81756 0.75725 0.88462 1.90563 1.75632 1.52086 1.26164 1.21504 0.93302 1.01968 0.97456 1.21517 1.02267 0.97243 0.96660 1.21628 0.99917 0.89935 0.95633 1.21864 1.05228 0.94462 0.98364 1.21490 1.01669 1.01612 0.93087 1.21778 0.90467 1.01009 0.97065 1.21422 0.97874 0.98882 0.99244 1.21444 0.98775 1.03322 0.93331 0.88979 0.88301 0.88030 0.89622 0.89805 0.95703 0.93344 0.92493 0.92606 0.91463 0.91058 0.86959 0.93400 0.92866 0.92195 0.92068 0.91714 0.92595 0.92426 0.91649 0.91704 0.93893 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 14.32 29.02 0.42 -2.34 16 2 C -0.16 -2.54 9.85 -36.02 -0.35 -2.90 16 3 C 0.14 2.63 5.91 -5.19 -0.03 2.60 16 4 N -0.58 -11.89 2.46 -176.43 -0.43 -12.32 16 5 C 0.20 4.33 3.74 -5.19 -0.02 4.31 16 6 C -0.53 -13.23 7.75 -34.44 -0.27 -13.49 16 7 H 0.08 2.28 7.22 -52.49 -0.38 1.90 16 8 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -24.96 13.96 55.43 0.77 -24.19 16 10 Si 0.86 19.50 27.47 -169.99 -4.67 14.83 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 14 C 0.56 11.37 5.49 -10.99 -0.06 11.31 16 15 O -0.56 -12.33 13.39 5.56 0.07 -12.26 16 16 C -0.14 -2.51 1.47 -155.66 -0.23 -2.74 16 17 C -0.12 -1.92 7.84 37.16 0.29 -1.63 16 18 C -0.07 -1.25 2.70 -154.47 -0.42 -1.67 16 19 C -0.14 -2.81 8.58 37.16 0.32 -2.49 16 20 C -0.12 -1.97 8.29 37.16 0.31 -1.66 16 21 C -0.10 -1.67 2.70 -154.47 -0.42 -2.09 16 22 C -0.12 -1.54 8.61 37.16 0.32 -1.22 16 23 C -0.11 -1.87 8.00 37.16 0.30 -1.57 16 24 H 0.09 1.13 8.06 -52.49 -0.42 0.71 16 25 H 0.10 1.39 7.84 -52.48 -0.41 0.98 16 26 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 27 H 0.09 1.62 7.74 -51.93 -0.40 1.22 16 28 H 0.08 1.59 7.25 -51.92 -0.38 1.21 16 29 H 0.03 0.56 7.19 -51.93 -0.37 0.18 16 30 H 0.05 1.03 3.54 -51.93 -0.18 0.85 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.97 5.51 -51.93 -0.29 0.68 16 34 H 0.07 1.21 5.65 -51.93 -0.29 0.91 16 35 H 0.11 2.59 4.70 -51.93 -0.24 2.35 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 1.07 5.02 -51.93 -0.26 0.81 16 38 H 0.06 0.81 4.98 -51.93 -0.26 0.55 16 39 H 0.06 0.97 8.01 -51.93 -0.42 0.55 16 40 H 0.06 1.13 7.65 -51.93 -0.40 0.73 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 43 H 0.06 0.80 4.66 -51.93 -0.24 0.56 16 44 H 0.06 1.18 5.03 -51.92 -0.26 0.92 16 45 H 0.04 0.61 8.04 -51.93 -0.42 0.19 16 46 H 0.07 1.27 6.84 -51.93 -0.36 0.91 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -27.70 342.55 -6.29 -33.99 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.26 Total: 8.41 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 0.06 Total: -13.62 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.34 Total: -36.51 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.67 Total: 14.83 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.70 -6.29 -33.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141409005.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.248 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds