Wall clock time and date at job start Tue Mar 31 2020 00:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99582 * 2 1 4 4 H 1.48498 * 109.46981 * 269.99564 * 3 2 1 5 5 H 1.48496 * 109.47273 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.46754 * 149.99974 * 3 2 1 7 7 C 1.37870 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00558 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47032 * 300.00270 * 10 9 7 12 12 C 1.53004 * 109.46900 * 299.99538 * 11 10 9 13 13 N 1.46898 * 109.46829 * 180.02562 * 12 11 10 14 14 C 1.47171 * 111.00214 * 331.79511 * 13 12 11 15 15 C 1.53067 * 109.23020 * 179.97438 * 14 13 12 16 16 O 1.42987 * 109.53520 * 301.32580 * 15 14 13 17 17 C 1.43187 * 113.66999 * 60.38673 * 16 15 14 18 18 C 1.46888 * 110.97070 * 95.13170 * 13 12 11 19 19 C 1.53397 * 113.57137 * 312.62863 * 18 13 12 20 20 C 1.53852 * 86.96276 * 140.09900 * 19 18 13 21 21 C 1.53363 * 113.75868 * 50.65734 * 18 13 12 22 22 C 1.52996 * 109.46981 * 60.00599 * 12 11 10 23 23 C 1.53004 * 109.47251 * 59.99546 * 9 7 2 24 24 H 0.96999 * 120.00716 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46997 * 299.99806 * 9 7 2 26 26 H 1.09002 * 109.46960 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.46608 * 59.99978 * 10 9 7 28 28 H 1.08999 * 109.46861 * 179.97438 * 11 10 9 29 29 H 1.09002 * 109.47288 * 59.99582 * 11 10 9 30 30 H 1.09002 * 109.47186 * 300.00107 * 12 11 10 31 31 H 1.09000 * 109.50800 * 60.03349 * 14 13 12 32 32 H 1.08995 * 109.51762 * 299.88407 * 14 13 12 33 33 H 1.09000 * 109.46142 * 181.31000 * 15 14 13 34 34 H 1.08999 * 109.46062 * 61.34382 * 15 14 13 35 35 H 1.09000 * 109.55518 * 63.46550 * 17 16 15 36 36 H 1.09005 * 109.54985 * 183.65878 * 17 16 15 37 37 H 1.08999 * 113.62836 * 254.61810 * 19 18 13 38 38 H 1.08996 * 113.63051 * 25.57725 * 19 18 13 39 39 H 1.09002 * 113.59921 * 220.29838 * 20 19 18 40 40 H 1.08996 * 113.60414 * 89.42987 * 20 19 18 41 41 H 1.09004 * 113.63461 * 334.60686 * 21 18 13 42 42 H 1.09005 * 113.62708 * 105.46946 * 21 18 13 43 43 H 1.09002 * 109.47562 * 59.99738 * 22 12 11 44 44 H 1.09000 * 109.47127 * 180.02562 * 22 12 11 45 45 H 1.09002 * 109.47186 * 180.02562 * 23 9 7 46 46 H 1.08999 * 109.47246 * 300.00282 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.1250 -3.5809 -1.2487 12 6 2.2454 -3.6621 -2.4979 13 7 3.0900 -3.5848 -3.6973 14 6 4.3183 -2.8198 -3.4290 15 6 5.1665 -2.7653 -4.7021 16 8 5.4825 -4.0946 -5.1234 17 6 4.3312 -4.8922 -5.4213 18 6 3.4175 -4.9267 -4.1970 19 6 3.8955 -5.8891 -3.1023 20 6 3.0661 -6.9751 -3.8093 21 6 2.1954 -5.8371 -4.3694 22 6 1.2512 -2.4992 -2.4980 23 6 0.3719 -2.5805 -1.2490 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 1.7004 -4.6060 0.0010 27 1 2.8720 -3.6042 0.8905 28 1 3.8336 -4.4091 -1.2484 29 1 3.6700 -2.6369 -1.2487 30 1 1.7004 -4.6061 -2.4979 31 1 4.8843 -3.3067 -2.6349 32 1 4.0569 -1.8070 -3.1225 33 1 6.0882 -2.2192 -4.5013 34 1 4.6082 -2.2581 -5.4889 35 1 3.7949 -4.4578 -6.2650 36 1 4.6445 -5.9059 -5.6712 37 1 4.9691 -6.0763 -3.1234 38 1 3.5279 -5.6368 -2.1077 39 1 2.5343 -7.6341 -3.1228 40 1 3.6201 -7.5182 -4.5749 41 1 1.3574 -5.5703 -3.7254 42 1 1.9013 -5.9812 -5.4091 43 1 1.7961 -1.5551 -2.4980 44 1 0.6242 -2.5572 -3.3877 45 1 -0.1734 -3.5243 -1.2488 46 1 -0.3365 -1.7520 -1.2494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:15 Heat of formation + Delta-G solvation = -17.231551 kcal Electronic energy + Delta-G solvation = -24352.597050 eV Core-core repulsion = 21242.753108 eV Total energy + Delta-G solvation = -3109.843942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03257 -37.68934 -37.00741 -34.30803 -31.99891 -29.98684 -29.30913 -28.71561 -26.07566 -25.73494 -24.60826 -23.73079 -21.98783 -20.95461 -20.36610 -18.74837 -17.84877 -16.73944 -16.12749 -15.69045 -15.49899 -15.16482 -14.62389 -14.28989 -14.05606 -13.64814 -13.51618 -13.10399 -12.99933 -12.72894 -12.25884 -11.99283 -11.65313 -11.45470 -11.35776 -11.27357 -11.02874 -10.93471 -10.74308 -10.64450 -10.52090 -10.39883 -10.22481 -10.09414 -9.91106 -9.52619 -9.43645 -9.10992 -8.85263 -8.60802 -8.24065 -7.75283 -5.94417 -3.98669 3.30442 3.38137 3.40195 3.88175 4.08316 4.45821 4.68465 4.70444 4.75437 4.94538 5.14121 5.28840 5.36209 5.43520 5.45769 5.55621 5.60921 5.68939 5.73858 5.79121 5.81251 5.92501 5.99154 6.05021 6.11267 6.17561 6.26033 6.29146 6.40438 6.50601 6.59196 6.63944 6.76412 6.80802 6.87861 7.02515 7.18607 7.19886 7.38442 7.49618 7.59363 7.70069 7.77388 7.97954 8.19978 8.51444 9.03264 9.64363 11.11500 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.006126 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.135918 B = 4569.644564 C = 5222.375418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.882 3.118 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.053 0.947 9 C 0.044 3.956 10 C -0.104 4.104 11 C -0.137 4.137 12 C 0.086 3.914 13 N -0.515 5.515 14 C 0.018 3.982 15 C 0.061 3.939 16 O -0.386 6.386 17 C 0.092 3.908 18 C 0.055 3.945 19 C -0.177 4.177 20 C -0.141 4.141 21 C -0.129 4.129 22 C -0.082 4.082 23 C -0.108 4.108 24 H 0.258 0.742 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.036 0.964 45 H 0.011 0.989 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 -10.266 -9.228 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.710 3.290 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.142 4.142 11 C -0.175 4.175 12 C -0.021 4.021 13 N -0.238 5.238 14 C -0.109 4.109 15 C -0.016 4.016 16 O -0.304 6.304 17 C 0.015 3.985 18 C -0.036 4.036 19 C -0.216 4.216 20 C -0.179 4.179 21 C -0.166 4.166 22 C -0.121 4.121 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.030 0.970 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.166 -9.928 -9.627 15.142 hybrid contribution 0.613 0.675 0.709 1.155 sum 6.779 -9.253 -8.917 14.529 Atomic orbital electron populations 1.69860 1.05800 1.26138 1.51177 1.24914 0.94730 0.98701 0.95496 0.86757 0.79966 0.84220 0.78046 1.20769 1.21370 1.20100 1.21104 0.92552 0.90444 1.49631 0.92919 1.18683 0.92632 0.91984 0.94120 1.21528 0.98207 0.98629 0.95879 1.22296 0.98161 1.01165 0.95917 1.21902 0.93987 0.99917 0.86273 1.62461 1.16052 1.12615 1.32634 1.22820 0.91051 1.00175 0.96894 1.22716 0.99378 0.83643 0.95862 1.87969 1.30732 1.24458 1.87286 1.22330 0.86116 0.95570 0.94503 1.22873 0.96224 0.88645 0.95897 1.23869 1.00301 0.97163 1.00264 1.22787 0.98659 0.96366 1.00057 1.23107 0.97031 0.94855 1.01645 1.21287 0.96182 0.97526 0.97055 1.21522 0.98734 0.99275 0.95086 0.93178 0.95931 0.95067 0.93731 0.93877 0.90503 0.91255 0.93232 0.89111 0.88838 0.92579 0.92461 0.88883 0.91631 0.88135 0.91440 0.90515 0.88775 0.91360 0.91239 0.94567 0.97012 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 11.32 55.43 0.63 -24.34 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.50 -13.03 6.61 -34.44 -0.23 -13.26 16 8 H 0.05 1.37 6.71 -52.49 -0.35 1.02 16 9 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 10 C -0.10 -2.12 5.41 -26.73 -0.14 -2.27 16 11 C -0.14 -2.53 3.23 -26.73 -0.09 -2.61 16 12 C 0.09 1.53 1.48 -67.71 -0.10 1.42 16 13 N -0.52 -8.22 4.57 -210.50 -0.96 -9.19 16 14 C 0.02 0.29 4.27 -3.64 -0.02 0.27 16 15 C 0.06 0.82 6.94 37.19 0.26 1.08 16 16 O -0.39 -5.48 10.84 -35.23 -0.38 -5.86 16 17 C 0.09 1.16 6.05 37.06 0.22 1.38 16 18 C 0.05 0.74 1.01 -131.31 -0.13 0.61 16 19 C -0.18 -2.35 6.13 -26.08 -0.16 -2.51 16 20 C -0.14 -1.56 7.73 -25.85 -0.20 -1.76 16 21 C -0.13 -1.59 7.01 -26.10 -0.18 -1.78 16 22 C -0.08 -1.71 5.30 -26.75 -0.14 -1.85 16 23 C -0.11 -2.48 5.23 -26.75 -0.14 -2.62 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.73 4.99 -51.93 -0.26 0.47 16 29 H 0.08 1.54 4.93 -51.93 -0.26 1.29 16 30 H 0.07 1.21 4.83 -51.93 -0.25 0.95 16 31 H 0.05 0.80 6.11 -51.93 -0.32 0.48 16 32 H 0.09 1.53 7.64 -51.93 -0.40 1.13 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.00 7.33 -51.93 -0.38 0.62 16 37 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 38 H 0.10 1.48 4.23 -51.93 -0.22 1.26 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.73 7.63 -51.93 -0.40 0.34 16 41 H 0.09 1.30 5.86 -51.93 -0.30 0.99 16 42 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 43 H 0.07 1.61 7.06 -51.93 -0.37 1.25 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -27.21 323.07 -9.85 -37.06 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.60 Total: 2.99 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -1.38 Total: -21.48 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: -0.34 Total: -33.52 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.38 Total: -5.86 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.21 -9.85 -37.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.828 kcal (2) G-P(sol) polarization free energy of solvation -27.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds