Wall clock time and date at job start Tue Mar 31 2020 00:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99582 * 2 1 4 4 H 1.48498 * 109.46981 * 269.99564 * 3 2 1 5 5 H 1.48496 * 109.47273 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.46754 * 149.99974 * 3 2 1 7 7 C 1.37870 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00558 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47401 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47032 * 300.00270 * 10 9 7 12 12 C 1.53004 * 109.46900 * 299.99538 * 11 10 9 13 13 N 1.46898 * 109.46829 * 180.02562 * 12 11 10 14 14 C 1.47171 * 111.00214 * 331.79511 * 13 12 11 15 15 C 1.53067 * 109.23020 * 179.97438 * 14 13 12 16 16 O 1.42987 * 109.53520 * 301.32580 * 15 14 13 17 17 C 1.43187 * 113.66999 * 60.38673 * 16 15 14 18 18 C 1.46888 * 110.97070 * 95.13170 * 13 12 11 19 19 C 1.53397 * 113.57137 * 312.62863 * 18 13 12 20 20 C 1.53852 * 86.96276 * 140.09900 * 19 18 13 21 21 C 1.53363 * 113.75868 * 50.65734 * 18 13 12 22 22 C 1.52996 * 109.46981 * 60.00599 * 12 11 10 23 23 C 1.53004 * 109.47251 * 59.99546 * 9 7 2 24 24 H 0.96999 * 120.00716 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46997 * 299.99806 * 9 7 2 26 26 H 1.09002 * 109.46960 * 179.97438 * 10 9 7 27 27 H 1.09000 * 109.46608 * 59.99978 * 10 9 7 28 28 H 1.08999 * 109.46861 * 179.97438 * 11 10 9 29 29 H 1.09002 * 109.47288 * 59.99582 * 11 10 9 30 30 H 1.09002 * 109.47186 * 300.00107 * 12 11 10 31 31 H 1.09000 * 109.50800 * 60.03349 * 14 13 12 32 32 H 1.08995 * 109.51762 * 299.88407 * 14 13 12 33 33 H 1.09000 * 109.46142 * 181.31000 * 15 14 13 34 34 H 1.08999 * 109.46062 * 61.34382 * 15 14 13 35 35 H 1.09000 * 109.55518 * 63.46550 * 17 16 15 36 36 H 1.09005 * 109.54985 * 183.65878 * 17 16 15 37 37 H 1.08999 * 113.62836 * 254.61810 * 19 18 13 38 38 H 1.08996 * 113.63051 * 25.57725 * 19 18 13 39 39 H 1.09002 * 113.59921 * 220.29838 * 20 19 18 40 40 H 1.08996 * 113.60414 * 89.42987 * 20 19 18 41 41 H 1.09004 * 113.63461 * 334.60686 * 21 18 13 42 42 H 1.09005 * 113.62708 * 105.46946 * 21 18 13 43 43 H 1.09002 * 109.47562 * 59.99738 * 22 12 11 44 44 H 1.09000 * 109.47127 * 180.02562 * 22 12 11 45 45 H 1.09002 * 109.47186 * 180.02562 * 23 9 7 46 46 H 1.08999 * 109.47246 * 300.00282 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 3.1250 -3.5809 -1.2487 12 6 2.2454 -3.6621 -2.4979 13 7 3.0900 -3.5848 -3.6973 14 6 4.3183 -2.8198 -3.4290 15 6 5.1665 -2.7653 -4.7021 16 8 5.4825 -4.0946 -5.1234 17 6 4.3312 -4.8922 -5.4213 18 6 3.4175 -4.9267 -4.1970 19 6 3.8955 -5.8891 -3.1023 20 6 3.0661 -6.9751 -3.8093 21 6 2.1954 -5.8371 -4.3694 22 6 1.2512 -2.4992 -2.4980 23 6 0.3719 -2.5805 -1.2490 24 1 -0.4851 0.8400 -0.0004 25 1 0.6241 -2.5567 0.8903 26 1 1.7004 -4.6060 0.0010 27 1 2.8720 -3.6042 0.8905 28 1 3.8336 -4.4091 -1.2484 29 1 3.6700 -2.6369 -1.2487 30 1 1.7004 -4.6061 -2.4979 31 1 4.8843 -3.3067 -2.6349 32 1 4.0569 -1.8070 -3.1225 33 1 6.0882 -2.2192 -4.5013 34 1 4.6082 -2.2581 -5.4889 35 1 3.7949 -4.4578 -6.2650 36 1 4.6445 -5.9059 -5.6712 37 1 4.9691 -6.0763 -3.1234 38 1 3.5279 -5.6368 -2.1077 39 1 2.5343 -7.6341 -3.1228 40 1 3.6201 -7.5182 -4.5749 41 1 1.3574 -5.5703 -3.7254 42 1 1.9013 -5.9812 -5.4091 43 1 1.7961 -1.5551 -2.4980 44 1 0.6242 -2.5572 -3.3877 45 1 -0.1734 -3.5243 -1.2488 46 1 -0.3365 -1.7520 -1.2494 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:14 Heat of formation + Delta-G solvation = -32.818724 kcal Electronic energy + Delta-G solvation = -24353.272961 eV Core-core repulsion = 21242.753108 eV Total energy + Delta-G solvation = -3110.519852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.18811 -39.21215 -38.08327 -35.79892 -33.87878 -31.58399 -30.70836 -30.06004 -27.50247 -26.78666 -26.36778 -24.82870 -23.44610 -22.44309 -21.75450 -20.41667 -19.04716 -18.01218 -17.60408 -17.10668 -16.87453 -16.50454 -16.16443 -15.70315 -15.21193 -15.01053 -14.82941 -14.74492 -14.55489 -13.98863 -13.55007 -13.44855 -13.20870 -12.99857 -12.84727 -12.80162 -12.56952 -12.40383 -12.31802 -12.06083 -11.85680 -11.82746 -11.61578 -11.44882 -11.33386 -11.06346 -10.88910 -10.72759 -10.55846 -10.41654 -10.19251 -9.04045 -8.02652 -6.12366 1.38951 1.41189 1.48940 2.45066 2.81270 2.93288 3.25752 3.69043 3.70878 3.74753 3.95178 3.99613 4.05866 4.18061 4.27040 4.39290 4.41522 4.54682 4.59993 4.64566 4.69556 4.77424 4.79553 4.80550 4.88978 4.91978 4.98309 4.99591 5.03198 5.06414 5.11328 5.17047 5.19596 5.28607 5.41014 5.46051 5.51067 5.66947 5.69693 5.76507 5.93210 6.14754 6.19383 6.26454 6.34232 6.47120 6.96920 7.53245 9.02181 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.006126 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.135918 B = 4569.644564 C = 5222.375418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.502 4.502 8 H 0.050 0.950 9 C 0.040 3.960 10 C -0.099 4.099 11 C -0.126 4.126 12 C 0.100 3.900 13 N -0.523 5.523 14 C 0.020 3.980 15 C 0.066 3.934 16 O -0.395 6.395 17 C 0.091 3.909 18 C 0.047 3.953 19 C -0.180 4.180 20 C -0.126 4.126 21 C -0.129 4.129 22 C -0.072 4.072 23 C -0.102 4.102 24 H 0.257 0.743 25 H -0.013 1.013 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.025 0.975 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.847 -11.905 -10.776 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.137 4.137 11 C -0.164 4.164 12 C -0.008 4.008 13 N -0.245 5.245 14 C -0.108 4.108 15 C -0.011 4.011 16 O -0.313 6.313 17 C 0.014 3.986 18 C -0.044 4.044 19 C -0.218 4.218 20 C -0.163 4.163 21 C -0.167 4.167 22 C -0.110 4.110 23 C -0.140 4.140 24 H 0.066 0.934 25 H 0.005 0.995 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.117 0.883 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.044 0.956 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.638 -11.578 -11.179 17.815 hybrid contribution 0.132 1.162 1.202 1.678 sum 7.770 -10.416 -9.977 16.383 Atomic orbital electron populations 1.70003 1.07020 1.26593 1.52275 1.25580 0.95414 1.01691 0.95548 0.85865 0.78943 0.80680 0.78067 1.20372 1.21391 1.19470 1.21339 0.92492 0.91468 1.48749 0.93195 1.18673 0.93093 0.93019 0.93083 1.21432 0.97688 0.97663 0.96944 1.22187 0.98033 1.00984 0.95219 1.21620 0.93587 0.98654 0.86907 1.62359 1.16276 1.14537 1.31342 1.22770 0.91090 0.98913 0.97989 1.22709 0.99799 0.83894 0.94670 1.87962 1.31585 1.24593 1.87187 1.22506 0.85542 0.96690 0.93872 1.23114 0.97455 0.87243 0.96548 1.23802 1.00572 0.98148 0.99322 1.22768 0.97718 0.95651 1.00189 1.23090 0.96139 0.94993 1.02456 1.21106 0.96348 0.97615 0.95935 1.21365 0.98394 0.98520 0.95768 0.93417 0.99468 0.93338 0.93960 0.91729 0.92466 0.90233 0.93854 0.91188 0.87112 0.92376 0.92006 0.86450 0.91616 0.89822 0.90806 0.88258 0.90358 0.89729 0.94171 0.94114 0.95598 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.17 11.32 21.44 0.24 -52.93 16 2 C 0.02 0.85 5.30 84.65 0.45 1.30 16 3 Si 0.94 43.75 29.54 68.60 2.03 45.78 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 7 C -0.50 -26.87 6.61 25.60 0.17 -26.70 16 8 H 0.05 2.65 6.71 -2.91 -0.02 2.63 16 9 C 0.04 1.97 2.59 -11.54 -0.03 1.94 16 10 C -0.10 -4.02 5.41 30.59 0.17 -3.85 16 11 C -0.13 -4.56 3.23 30.59 0.10 -4.46 16 12 C 0.10 3.45 1.48 44.92 0.07 3.52 16 13 N -0.52 -15.99 4.57 -819.90 -3.75 -19.74 16 14 C 0.02 0.62 4.27 86.27 0.37 0.99 16 15 C 0.07 1.67 6.94 72.00 0.50 2.17 16 16 O -0.39 -10.11 10.84 -148.98 -1.62 -11.73 16 17 C 0.09 1.98 6.05 71.92 0.43 2.41 16 18 C 0.05 1.15 1.01 3.72 0.00 1.15 16 19 C -0.18 -4.23 6.13 31.02 0.19 -4.04 16 20 C -0.13 -2.30 7.73 31.17 0.24 -2.06 16 21 C -0.13 -2.79 7.01 31.00 0.22 -2.58 16 22 C -0.07 -3.02 5.30 30.58 0.16 -2.85 16 23 C -0.10 -4.80 5.23 30.58 0.16 -4.64 16 24 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 2.09 4.99 -2.39 -0.01 2.08 16 29 H 0.06 2.31 4.93 -2.39 -0.01 2.29 16 30 H 0.08 2.63 4.83 -2.39 -0.01 2.62 16 31 H 0.04 1.35 6.11 -2.39 -0.01 1.34 16 32 H 0.07 2.39 7.64 -2.39 -0.02 2.37 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.12 2.00 7.33 -2.38 -0.02 1.98 16 37 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 38 H 0.08 2.26 4.23 -2.39 -0.01 2.25 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.41 7.63 -2.39 -0.02 1.40 16 41 H 0.08 1.97 5.86 -2.38 -0.01 1.95 16 42 H 0.08 1.56 8.09 -2.38 -0.02 1.54 16 43 H 0.04 1.91 7.06 -2.39 -0.02 1.89 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 Total: -1.00 -59.36 323.07 1.06 -58.30 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.96 Total: 18.03 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 3.20 Total: -37.71 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -3.51 Total: -72.66 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -1.62 Total: -11.73 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -59.36 1.06 -58.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.483 kcal (2) G-P(sol) polarization free energy of solvation -59.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds