Wall clock time and date at job start Tue Mar 31 2020 00:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47170 * 90.00114 * 3 2 1 5 5 H 1.48497 * 109.47420 * 210.00272 * 3 2 1 6 6 H 1.48502 * 109.47249 * 330.00130 * 3 2 1 7 7 C 1.37873 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99853 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00393 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47245 * 175.05750 * 9 7 2 11 11 C 1.42898 * 113.99963 * 184.98382 * 10 9 7 12 12 C 1.53002 * 109.47369 * 184.92691 * 11 10 9 13 13 N 1.46908 * 109.46728 * 67.29065 * 12 11 10 14 14 C 1.47901 * 111.00047 * 300.12521 * 13 12 11 15 15 C 1.53987 * 107.05617 * 214.15672 * 14 13 12 16 16 H 1.09001 * 110.30934 * 120.14342 * 15 14 13 17 17 C 1.52999 * 110.30806 * 242.20884 * 15 14 13 18 18 C 1.53003 * 117.49810 * 247.29557 * 17 15 14 19 19 C 1.53004 * 117.49749 * 178.63375 * 17 15 14 20 20 C 1.54591 * 105.14438 * 1.22818 * 15 14 13 21 21 C 1.48528 * 110.99772 * 182.72917 * 13 12 11 22 22 H 1.09005 * 110.67194 * 41.28379 * 21 13 12 23 23 C 1.53001 * 110.66642 * 278.15663 * 21 13 12 24 24 C 1.53003 * 117.49729 * 135.35184 * 23 21 13 25 25 C 1.53000 * 117.50034 * 66.69448 * 23 21 13 26 26 H 0.96998 * 120.00168 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47063 * 295.05570 * 9 7 2 28 28 H 1.09002 * 109.46757 * 55.05515 * 9 7 2 29 29 H 1.08997 * 109.47388 * 304.92935 * 11 10 9 30 30 H 1.09006 * 109.46954 * 64.93084 * 11 10 9 31 31 H 1.08994 * 109.47286 * 187.28997 * 12 11 10 32 32 H 1.08997 * 109.47161 * 307.29720 * 12 11 10 33 33 H 1.09005 * 109.91520 * 333.51158 * 14 13 12 34 34 H 1.08999 * 109.91630 * 94.80111 * 14 13 12 35 35 H 1.08993 * 115.55169 * 32.96494 * 17 15 14 36 36 H 1.09001 * 117.50100 * 359.97438 * 18 17 15 37 37 H 1.09002 * 117.49579 * 145.02405 * 18 17 15 38 38 H 1.08997 * 117.49922 * 214.97600 * 19 17 15 39 39 H 1.08997 * 117.50361 * 0.02562 * 19 17 15 40 40 H 1.08993 * 110.72996 * 140.31496 * 20 15 14 41 41 H 1.09004 * 110.72262 * 263.60247 * 20 15 14 42 42 H 1.08999 * 115.54922 * 281.01874 * 23 21 13 43 43 H 1.08994 * 117.50324 * 0.02562 * 24 23 21 44 44 H 1.09007 * 117.49924 * 145.01999 * 24 23 21 45 45 H 1.09001 * 117.49900 * 214.97869 * 25 23 21 46 46 H 1.09004 * 117.49896 * 359.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1752 -3.5828 -0.1172 11 6 1.5555 -4.8645 -0.2401 12 6 2.6304 -5.9534 -0.2341 13 7 3.2654 -6.0072 1.0895 14 6 3.8961 -4.7129 1.4279 15 6 5.1589 -5.0273 2.2512 16 1 6.0448 -4.6399 1.7480 17 6 5.0411 -4.4278 3.6539 18 6 5.9893 -3.2824 4.0145 19 6 6.1981 -4.6705 4.6253 20 6 5.2172 -6.5702 2.3279 21 6 4.3608 -7.0101 1.1139 22 1 4.9447 -6.9646 0.1946 23 6 3.8000 -8.4171 1.3301 24 6 4.3538 -9.5409 0.4518 25 6 2.9367 -9.0124 0.2159 26 1 -0.4850 -0.8400 0.0004 27 1 0.6928 -2.5965 0.9306 28 1 0.5592 -2.5193 -0.8427 29 1 0.8752 -5.0210 0.5970 30 1 0.9975 -4.9101 -1.1753 31 1 2.1726 -6.9171 -0.4569 32 1 3.3828 -5.7253 -0.9890 33 1 4.1700 -4.1835 0.5152 34 1 3.2085 -4.1081 2.0189 35 1 4.0337 -4.3967 4.0688 36 1 6.6973 -2.9563 3.2526 37 1 5.6057 -2.4981 4.6670 38 1 5.9518 -4.7986 5.6793 39 1 7.0433 -5.2569 4.2649 40 1 6.2432 -6.9232 2.2243 41 1 4.7776 -6.9270 3.2594 42 1 3.5363 -8.6653 2.3582 43 1 5.1179 -9.2780 -0.2797 44 1 4.4540 -10.5286 0.9020 45 1 2.1052 -9.6525 0.5110 46 1 2.7679 -8.4014 -0.6709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176658694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:04 Heat of formation + Delta-G solvation = -19.307556 kcal Electronic energy + Delta-G solvation = -22684.235593 eV Core-core repulsion = 19574.301629 eV Total energy + Delta-G solvation = -3109.933964 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93404 -38.79423 -38.27615 -36.65602 -35.26451 -33.33588 -29.94403 -29.54575 -28.16803 -24.88340 -24.28083 -23.74939 -23.04182 -23.03023 -22.18083 -21.10879 -20.45157 -19.16850 -17.83006 -17.51495 -16.64468 -16.38574 -16.22113 -15.77009 -15.59556 -15.25086 -15.23409 -14.72725 -14.45949 -13.97217 -13.81218 -13.51200 -13.39502 -13.04462 -12.95234 -12.53374 -12.52612 -12.36462 -12.30196 -12.13550 -12.03552 -11.94646 -11.78025 -11.50448 -11.12944 -11.04010 -10.94583 -10.84798 -10.81696 -10.58582 -10.32493 -9.37767 -8.84707 -6.55305 1.49698 1.59451 1.79031 2.46954 2.68726 2.89326 2.99754 3.04683 3.26040 3.60661 3.64400 3.73413 3.91778 4.04418 4.11076 4.14898 4.18616 4.22782 4.25315 4.34116 4.39579 4.45892 4.49082 4.60839 4.64758 4.71100 4.71892 4.77676 4.80753 4.87582 4.88978 5.01387 5.02796 5.05092 5.15189 5.24826 5.26966 5.29340 5.31851 5.36966 5.42214 5.66258 5.90524 5.97779 6.12415 6.31730 6.62973 7.25617 8.56277 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.004957 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.925161 B = 5646.858685 C = 7225.652268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.028 4.028 3 Si 1.128 2.872 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.616 4.616 8 H 0.051 0.949 9 C 0.199 3.801 10 O -0.391 6.391 11 C 0.052 3.948 12 C 0.055 3.945 13 N -0.514 5.514 14 C 0.066 3.934 15 C -0.066 4.066 16 H 0.071 0.929 17 C -0.153 4.153 18 C -0.193 4.193 19 C -0.154 4.154 20 C -0.093 4.093 21 C 0.091 3.909 22 H 0.048 0.952 23 C -0.137 4.137 24 C -0.163 4.163 25 C -0.190 4.190 26 H 0.255 0.745 27 H -0.025 1.025 28 H -0.020 1.020 29 H 0.041 0.959 30 H 0.048 0.952 31 H 0.117 0.883 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -18.040 4.985 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.225 4.225 3 Si 0.947 3.053 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.654 4.654 8 H 0.070 0.930 9 C 0.124 3.876 10 O -0.311 6.311 11 C -0.025 4.025 12 C -0.072 4.072 13 N -0.238 5.238 14 C -0.062 4.062 15 C -0.085 4.085 16 H 0.090 0.910 17 C -0.172 4.172 18 C -0.230 4.230 19 C -0.191 4.191 20 C -0.131 4.131 21 C -0.016 4.016 22 H 0.066 0.934 23 C -0.156 4.156 24 C -0.201 4.201 25 C -0.227 4.227 26 H 0.064 0.936 27 H -0.007 1.007 28 H -0.002 1.002 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.128 0.872 45 H 0.119 0.881 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.049 -16.519 5.341 21.133 hybrid contribution -0.334 -1.147 -0.811 1.444 sum 11.715 -17.666 4.530 21.676 Atomic orbital electron populations 1.70893 1.07771 1.29789 1.48123 1.27562 0.96438 1.06519 0.92030 0.82820 0.74020 0.70252 0.78196 1.19292 1.19506 1.19992 1.22212 0.95154 0.91904 1.56085 0.93022 1.19894 0.89357 0.86126 0.92265 1.87927 1.34241 1.14656 1.94255 1.22607 0.96192 0.84295 0.99394 1.22515 0.96240 0.98137 0.90347 1.64708 1.27540 1.04975 1.26586 1.22641 0.94687 0.90849 0.98047 1.21604 0.96702 0.96577 0.93584 0.91026 1.22222 0.95620 1.03571 0.95743 1.23084 1.03176 0.92545 1.04152 1.22987 0.99452 0.98117 0.98497 1.22469 1.00099 0.92673 0.97858 1.22389 0.90517 0.90850 0.97850 0.93374 1.22069 1.04720 0.91778 0.96994 1.23071 0.96387 0.98261 1.02361 1.23105 0.95097 1.04045 1.00412 0.93591 1.00720 1.00247 0.94086 0.93339 0.86508 0.95003 0.95230 0.93463 0.89443 0.88905 0.89143 0.87890 0.87503 0.89198 0.90126 0.87357 0.88710 0.87202 0.88065 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.65 21.45 0.29 -58.16 16 2 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 3 Si 1.13 51.34 29.90 68.60 2.05 53.39 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.62 -37.67 9.43 25.60 0.24 -37.43 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.20 11.41 5.05 71.24 0.36 11.77 16 10 O -0.39 -19.52 7.14 -148.98 -1.06 -20.58 16 11 C 0.05 2.05 6.10 71.98 0.44 2.49 16 12 C 0.06 1.74 5.03 86.30 0.43 2.18 16 13 N -0.51 -15.92 5.03 -858.26 -4.32 -20.24 16 14 C 0.07 2.35 4.65 86.44 0.40 2.76 16 15 C -0.07 -1.79 3.16 -9.92 -0.03 -1.82 16 16 H 0.07 1.92 7.95 -2.39 -0.02 1.90 16 17 C -0.15 -4.06 4.88 -10.79 -0.05 -4.11 16 18 C -0.19 -4.74 10.19 30.62 0.31 -4.43 16 19 C -0.15 -3.05 10.00 30.62 0.31 -2.74 16 20 C -0.09 -2.01 5.82 31.80 0.19 -1.82 16 21 C 0.09 2.16 2.54 45.26 0.11 2.28 16 22 H 0.05 1.17 7.82 -2.38 -0.02 1.15 16 23 C -0.14 -2.65 5.43 -10.79 -0.06 -2.71 16 24 C -0.16 -2.47 10.20 30.62 0.31 -2.16 16 25 C -0.19 -3.40 9.27 30.62 0.28 -3.12 16 26 H 0.25 16.26 7.19 -92.71 -0.67 15.59 16 27 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 28 H -0.02 -1.19 7.81 -2.39 -0.02 -1.21 16 29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.12 2.99 4.86 -2.39 -0.01 2.98 16 32 H 0.03 1.04 8.00 -2.39 -0.02 1.02 16 33 H 0.03 1.23 6.56 -2.38 -0.02 1.22 16 34 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 35 H 0.09 2.63 7.93 -2.39 -0.02 2.61 16 36 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.71 7.68 -2.39 -0.02 1.69 16 42 H 0.11 2.08 8.01 -2.39 -0.02 2.06 16 43 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 46 H 0.09 1.73 5.76 -2.38 -0.01 1.72 16 Total: -1.00 -68.63 358.30 1.70 -66.93 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 1.03 Total: 18.74 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 3.71 Total: -40.08 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -4.03 Total: -78.41 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -1.06 Total: -20.58 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Total: -68.63 1.70 -66.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176658694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.622 kcal (2) G-P(sol) polarization free energy of solvation -68.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds