Wall clock time and date at job start Tue Mar 31 2020 01:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48497 * 109.47003 * 240.00162 * 3 2 1 5 5 H 1.48498 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47075 * 119.99825 * 3 2 1 7 7 C 1.37877 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00123 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46830 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50698 * 109.47228 * 179.97438 * 11 10 9 13 13 C 1.29442 * 117.96493 * 94.97695 * 12 11 10 14 14 C 1.50066 * 124.07638 * 179.52984 * 13 12 11 15 15 C 1.53025 * 110.14518 * 17.13412 * 14 13 12 16 16 H 1.08998 * 109.64593 * 70.24851 * 15 14 13 17 17 N 1.46900 * 109.63866 * 190.88077 * 15 14 13 18 18 C 1.47014 * 111.00531 * 58.63243 * 17 15 14 19 19 C 1.53097 * 109.26081 * 177.60933 * 18 17 15 20 20 O 1.43017 * 109.25882 * 56.84704 * 19 18 17 21 21 C 1.43007 * 113.73764 * 301.32796 * 20 19 18 22 22 C 1.47022 * 111.00043 * 294.99655 * 17 15 14 23 23 C 1.53378 * 108.44951 * 310.57177 * 15 14 13 24 24 C 1.50066 * 117.95917 * 274.99976 * 12 11 10 25 25 H 0.96993 * 120.00256 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47161 * 60.00534 * 9 7 2 27 27 H 1.08998 * 109.47183 * 300.00194 * 9 7 2 28 28 H 1.08997 * 109.47672 * 60.00304 * 10 9 7 29 29 H 1.09007 * 109.47014 * 299.99557 * 10 9 7 30 30 H 1.08997 * 109.46849 * 59.99531 * 11 10 9 31 31 H 1.08998 * 109.46848 * 299.99541 * 11 10 9 32 32 H 1.08000 * 117.95916 * 359.55215 * 13 12 11 33 33 H 1.08999 * 109.35865 * 137.33649 * 14 13 12 34 34 H 1.08992 * 109.36112 * 257.06222 * 14 13 12 35 35 H 1.09004 * 109.50594 * 297.54358 * 18 17 15 36 36 H 1.08997 * 109.50529 * 57.66908 * 18 17 15 37 37 H 1.09004 * 109.50310 * 296.90921 * 19 18 17 38 38 H 1.09000 * 109.50363 * 176.78454 * 19 18 17 39 39 H 1.08998 * 109.51238 * 298.73602 * 21 20 19 40 40 H 1.09000 * 109.54254 * 178.62919 * 21 20 19 41 41 H 1.09003 * 109.50407 * 302.32595 * 22 17 15 42 42 H 1.08992 * 109.50281 * 62.45935 * 22 17 15 43 43 H 1.09000 * 109.64464 * 307.74292 * 23 15 14 44 44 H 1.08995 * 109.64455 * 187.10992 * 23 15 14 45 45 H 1.09000 * 109.35786 * 317.33549 * 24 12 11 46 46 H 1.08994 * 109.36458 * 76.92383 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4597 -6.1325 -0.0018 13 6 2.7789 -6.6589 1.1369 14 6 3.7303 -7.8087 1.2945 15 6 4.5671 -7.9782 0.0246 16 1 5.2691 -7.1492 -0.0650 17 7 5.3019 -9.2489 0.0836 18 6 4.3796 -10.3849 0.2248 19 6 5.1810 -11.6894 0.2221 20 8 6.1533 -11.6478 1.2701 21 6 7.0685 -10.5541 1.1633 22 6 6.2862 -9.2381 1.1756 23 6 3.6212 -7.9852 -1.1827 24 6 3.0047 -6.5915 -1.3225 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6043 -0.8906 30 1 0.8540 -5.0446 -0.8913 31 1 0.8535 -5.0452 0.8886 32 1 2.3324 -6.2451 2.0289 33 1 4.3913 -7.6174 2.1399 34 1 3.1654 -8.7227 1.4772 35 1 3.8331 -10.2955 1.1637 36 1 3.6761 -10.3882 -0.6077 37 1 5.6848 -11.8050 -0.7376 38 1 4.5072 -12.5308 0.3838 39 1 7.6273 -10.6367 0.2311 40 1 7.7604 -10.5741 2.0053 41 1 6.9745 -8.4043 1.0370 42 1 5.7702 -9.1303 2.1296 43 1 2.8322 -8.7207 -1.0258 44 1 4.1808 -8.2305 -2.0853 45 1 2.1976 -6.6253 -2.0544 46 1 3.7680 -5.8913 -1.6616 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:38 Heat of formation + Delta-G solvation = -52.493807 kcal Electronic energy + Delta-G solvation = -21922.505014 eV Core-core repulsion = 18811.131986 eV Total energy + Delta-G solvation = -3111.373028 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40513 -38.49189 -35.98673 -33.95195 -32.26493 -31.53514 -30.76577 -29.91446 -27.37323 -25.64673 -24.49343 -23.46360 -22.90662 -21.54895 -20.25408 -19.92631 -17.47981 -17.01091 -16.38017 -16.21185 -15.37610 -15.30556 -15.16792 -14.76224 -14.53291 -14.35568 -13.97687 -13.83307 -13.14918 -12.85281 -12.83426 -12.44347 -12.27190 -12.17144 -11.93698 -11.75861 -11.54141 -11.17304 -11.05238 -10.84400 -10.71390 -10.69143 -10.59222 -10.50587 -10.26892 -9.93978 -9.62163 -9.28077 -9.10480 -8.62869 -8.33328 -8.30981 -5.97794 -4.00089 2.48466 3.34086 3.38221 3.40918 3.44494 3.61584 4.47446 4.52656 4.60828 4.64868 4.76402 4.84439 4.92147 4.96211 5.00694 5.20193 5.22257 5.31759 5.35957 5.37615 5.40572 5.48952 5.52900 5.53881 5.62549 5.67916 5.82477 5.87537 5.95312 6.02713 6.13034 6.17363 6.28683 6.41952 6.67291 6.70800 6.75205 6.83507 6.90938 6.95116 7.19287 7.30658 7.70484 7.86353 8.02998 8.46020 9.07129 9.63704 11.13537 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.038024 B = 0.002714 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.198821 B =10314.680217 C =10639.788862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.101 4.101 11 C -0.091 4.091 12 C -0.100 4.100 13 C -0.176 4.176 14 C -0.115 4.115 15 C 0.084 3.916 16 H 0.088 0.912 17 N -0.529 5.529 18 C 0.009 3.991 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.014 3.986 23 C -0.108 4.108 24 C -0.083 4.083 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.549 -23.302 0.051 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.139 4.139 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.195 4.195 14 C -0.153 4.153 15 C -0.024 4.024 16 H 0.106 0.894 17 N -0.253 5.253 18 C -0.119 4.119 19 C -0.013 4.013 20 O -0.306 6.306 21 C -0.013 4.013 22 C -0.115 4.115 23 C -0.146 4.146 24 C -0.121 4.121 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.670 -23.382 -0.246 25.703 hybrid contribution -0.112 1.456 0.675 1.609 sum 10.559 -21.926 0.429 24.340 Atomic orbital electron populations 1.69954 1.06050 1.26649 1.50974 1.25031 0.94848 0.99222 0.95408 0.86668 0.79596 0.83196 0.78609 1.20244 1.21287 1.20268 1.21244 0.92980 0.91187 1.50426 0.92827 1.19115 0.94050 0.91419 0.97086 1.21586 0.98909 0.93196 1.00219 1.20925 0.96459 0.93543 1.01917 1.21054 0.97928 0.96672 0.94365 1.21650 1.01312 0.98873 0.97623 1.21035 0.97670 0.97904 0.98708 1.21847 0.94714 0.91010 0.94783 0.89391 1.62513 1.16026 1.02854 1.43928 1.22888 0.95693 0.91361 1.01942 1.22677 0.90780 0.96781 0.91090 1.87976 1.44686 1.48500 1.49462 1.22662 0.91332 0.85011 1.02277 1.22800 0.95914 0.99199 0.93547 1.21652 0.97907 0.97308 0.97707 1.20412 1.00404 0.95777 0.95473 0.92985 0.96679 0.96760 0.93558 0.93474 0.91901 0.92028 0.87979 0.91617 0.91173 0.93357 0.89281 0.92359 0.88610 0.92336 0.88563 0.89570 0.93524 0.91969 0.90923 0.90705 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.13 5.14 -26.73 -0.14 -2.27 16 11 C -0.09 -1.58 5.22 -27.88 -0.15 -1.72 16 12 C -0.10 -1.45 5.09 -100.94 -0.51 -1.96 16 13 C -0.18 -2.41 9.37 -35.90 -0.34 -2.74 16 14 C -0.11 -1.30 4.72 -28.18 -0.13 -1.43 16 15 C 0.08 0.90 2.30 -67.50 -0.16 0.74 16 16 H 0.09 1.02 8.12 -51.93 -0.42 0.60 16 17 N -0.53 -5.10 4.73 -226.08 -1.07 -6.17 16 18 C 0.01 0.08 4.88 -3.71 -0.02 0.06 16 19 C 0.06 0.52 7.01 37.21 0.26 0.78 16 20 O -0.39 -3.87 10.83 -35.23 -0.38 -4.25 16 21 C 0.06 0.52 7.01 37.21 0.26 0.78 16 22 C 0.01 0.12 5.32 -3.71 -0.02 0.10 16 23 C -0.11 -1.13 4.84 -26.52 -0.13 -1.26 16 24 C -0.08 -1.03 5.80 -28.17 -0.16 -1.19 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 31 H 0.06 1.08 7.80 -51.93 -0.41 0.67 16 32 H 0.10 1.46 7.75 -52.49 -0.41 1.05 16 33 H 0.07 0.73 7.15 -51.93 -0.37 0.36 16 34 H 0.07 0.77 5.89 -51.93 -0.31 0.47 16 35 H 0.05 0.46 6.20 -51.93 -0.32 0.14 16 36 H 0.09 0.72 6.38 -51.93 -0.33 0.39 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.44 6.82 -51.93 -0.35 0.09 16 43 H 0.06 0.63 6.79 -51.93 -0.35 0.28 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -30.90 350.64 -10.53 -41.44 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.30 Total: -3.06 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.78 Total: -23.54 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.33 Total: -32.81 kcal Atomic # 8 Polarization: -3.87 SS G_CDS: -0.38 Total: -4.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.90 -10.53 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.056 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds