Wall clock time and date at job start Tue Mar 31 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48505 * 109.46927 * 269.99519 * 3 2 1 5 5 H 1.48498 * 109.47458 * 29.99281 * 3 2 1 6 6 H 1.48496 * 109.47202 * 149.99879 * 3 2 1 7 7 C 1.37871 * 120.00004 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85212 * 180.02562 * 7 2 1 9 9 C 1.53228 * 108.54026 * 128.63332 * 8 7 2 10 10 C 1.52956 * 109.40282 * 54.62828 * 9 8 7 11 11 H 1.08994 * 109.36069 * 56.47177 * 10 9 8 12 12 N 1.46903 * 109.41247 * 176.30011 * 10 9 8 13 13 C 1.46900 * 110.99857 * 275.35327 * 12 10 9 14 14 C 1.52967 * 109.44376 * 154.99668 * 13 12 10 15 15 C 1.53158 * 109.42744 * 181.88668 * 14 13 12 16 16 C 1.52584 * 109.30516 * 302.39523 * 15 14 13 17 17 C 1.53528 * 113.70117 * 284.08614 * 16 15 14 18 18 O 1.44273 * 85.37642 * 223.43979 * 17 16 15 19 19 C 1.44266 * 93.41274 * 23.85465 * 18 17 16 20 20 C 1.52579 * 113.23471 * 55.85639 * 16 15 14 21 21 C 1.52989 * 109.43929 * 275.19378 * 13 12 10 22 22 C 1.52964 * 109.81503 * 296.40139 * 10 9 8 23 23 C 1.51275 * 120.85250 * 0.02562 * 7 2 1 24 24 H 0.96998 * 120.00208 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.62303 * 248.35021 * 8 7 2 26 26 H 1.09004 * 109.62305 * 8.71823 * 8 7 2 27 27 H 1.08999 * 109.48033 * 294.64715 * 9 8 7 28 28 H 1.08999 * 109.48115 * 174.60804 * 9 8 7 29 29 H 1.00900 * 110.99991 * 39.29895 * 12 10 9 30 30 H 1.09005 * 109.41120 * 35.09576 * 13 12 10 31 31 H 1.09001 * 109.47825 * 61.90072 * 14 13 12 32 32 H 1.09002 * 109.48437 * 301.87596 * 14 13 12 33 33 H 1.08999 * 109.50091 * 182.44579 * 15 14 13 34 34 H 1.08998 * 109.49475 * 62.34554 * 15 14 13 35 35 H 1.09000 * 113.88552 * 337.55259 * 17 16 15 36 36 H 1.09005 * 113.88119 * 109.32641 * 17 16 15 37 37 H 1.08995 * 113.88808 * 222.04868 * 19 18 17 38 38 H 1.08995 * 114.01334 * 90.27189 * 19 18 17 39 39 H 1.09003 * 109.50204 * 64.07560 * 20 16 15 40 40 H 1.09002 * 109.50047 * 184.18747 * 20 16 15 41 41 H 1.08998 * 109.47689 * 298.08568 * 21 13 12 42 42 H 1.09001 * 109.47740 * 58.12136 * 21 13 12 43 43 H 1.09000 * 109.47832 * 183.58244 * 22 10 9 44 44 H 1.09004 * 109.48187 * 303.61627 * 22 10 9 45 45 H 1.08997 * 109.62327 * 111.64789 * 23 7 2 46 46 H 1.09006 * 109.77967 * 351.17766 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 6 3.5170 -1.2165 0.0011 9 6 3.9903 -2.1304 1.1363 10 6 3.3395 -3.5064 0.9857 11 1 3.5739 -3.9111 0.0012 12 7 3.8605 -4.4089 2.0212 13 6 5.1265 -5.0215 1.5972 14 6 5.9372 -5.4212 2.8313 15 6 7.2773 -6.0168 2.3894 16 6 7.0215 -7.2122 1.4764 17 6 6.5710 -8.4749 2.2245 18 8 7.4922 -9.1735 1.3614 19 6 8.2921 -7.9975 1.1197 20 6 6.1530 -6.8723 0.2688 21 6 4.8337 -6.2612 0.7500 22 6 1.8224 -3.3819 1.1363 23 6 1.2677 -2.5152 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 3.8778 -1.6009 -0.9529 26 1 3.8981 -0.2071 0.1567 27 1 3.7056 -1.6966 2.0949 28 1 5.0744 -2.2340 1.0916 29 1 3.9692 -3.9259 2.9004 30 1 5.6959 -4.3043 1.0059 31 1 5.3821 -6.1622 3.4065 32 1 6.1166 -4.5413 3.4491 33 1 7.8377 -6.3419 3.2660 34 1 7.8502 -5.2628 1.8498 35 1 6.8548 -8.4893 3.2769 36 1 5.5259 -8.7368 2.0590 37 1 8.6053 -7.8824 0.0821 38 1 9.1082 -7.8626 1.8295 39 1 6.6757 -6.1562 -0.3653 40 1 5.9478 -7.7800 -0.2989 41 1 4.2921 -6.9921 1.3504 42 1 4.2287 -5.9782 -0.1114 43 1 1.3702 -4.3726 1.0916 44 1 1.5891 -2.9185 2.0949 45 1 1.4206 -3.0196 -0.9535 46 1 0.2027 -2.3436 0.1574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257897678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:04:02 Heat of formation + Delta-G solvation = -43.193785 kcal Electronic energy + Delta-G solvation = -22875.565208 eV Core-core repulsion = 19764.595459 eV Total energy + Delta-G solvation = -3110.969749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.25929 -38.29844 -36.38072 -33.57141 -31.58252 -31.05076 -29.66854 -29.15539 -26.81946 -26.41142 -24.18708 -23.09514 -21.72135 -21.17627 -20.44127 -19.26670 -18.60471 -16.48270 -16.26102 -16.10204 -15.77241 -15.18437 -14.65094 -14.39914 -13.92468 -13.85094 -13.59066 -12.96914 -12.81705 -12.75270 -12.47042 -12.36950 -12.17591 -12.12686 -11.70647 -11.36921 -11.26578 -11.13182 -10.93033 -10.75721 -10.61821 -10.42766 -10.22911 -10.10431 -10.04119 -9.78817 -9.71336 -9.50529 -8.84112 -8.72123 -8.46094 -7.77321 -6.07466 -3.97966 3.26529 3.34770 3.35167 3.51387 3.91975 4.38900 4.41844 4.54266 4.70970 4.91000 5.01519 5.08363 5.18247 5.20363 5.26591 5.33603 5.40173 5.43828 5.59784 5.67371 5.72300 5.79409 5.81745 5.90514 5.94453 5.95070 6.00964 6.09725 6.17601 6.24886 6.33013 6.41731 6.53256 6.75905 6.84009 6.90928 6.97831 7.07571 7.23231 7.40927 7.62424 7.69821 7.75671 7.90665 7.95967 8.43610 9.00561 9.56981 11.02155 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.037925 B = 0.003627 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.118868 B = 7718.786590 C = 7975.379182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.484 4.484 8 C -0.017 4.017 9 C -0.132 4.132 10 C 0.100 3.900 11 H 0.064 0.936 12 N -0.688 5.688 13 C 0.088 3.912 14 C -0.118 4.118 15 C -0.108 4.108 16 C -0.120 4.120 17 C 0.043 3.957 18 O -0.383 6.383 19 C 0.038 3.962 20 C -0.095 4.095 21 C -0.104 4.104 22 C -0.093 4.093 23 C 0.009 3.991 24 H 0.263 0.737 25 H 0.014 0.986 26 H 0.031 0.969 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.335 0.665 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.001 0.999 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.373 -12.522 4.796 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.503 4.503 8 C -0.055 4.055 9 C -0.171 4.171 10 C -0.008 4.008 11 H 0.082 0.918 12 N -0.317 5.317 13 C -0.022 4.022 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.120 4.120 17 C -0.034 4.034 18 O -0.302 6.302 19 C -0.038 4.038 20 C -0.133 4.133 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.823 -13.216 4.509 19.649 hybrid contribution 1.091 1.975 0.207 2.266 sum 14.914 -11.241 4.716 19.262 Atomic orbital electron populations 1.69839 1.06102 1.26784 1.50166 1.24847 0.94704 0.98464 0.94767 0.86707 0.79932 0.83532 0.78428 1.20487 1.21668 1.19138 1.20056 0.89252 0.91619 1.49417 1.19760 0.96888 0.95356 0.93542 1.22198 0.96263 0.97529 1.01142 1.21507 0.96298 0.89692 0.93330 0.91806 1.60801 1.27015 1.37572 1.06310 1.21441 0.90075 0.95520 0.95201 1.21688 0.95372 1.00836 0.97692 1.21509 0.97645 0.96895 0.98582 1.23300 0.95801 0.95679 0.97189 1.24007 0.95482 0.89342 0.94526 1.89681 1.42824 1.31851 1.65803 1.24013 0.94184 0.83777 1.01871 1.21297 0.95774 1.00985 0.95261 1.21517 0.95873 0.96978 0.99865 1.21572 0.92638 0.98000 1.00891 1.19395 0.98560 0.92866 0.92083 0.92670 0.96788 0.95028 0.93064 0.95590 0.84765 0.94049 0.91230 0.92025 0.91658 0.91489 0.90364 0.89019 0.89337 0.90360 0.91453 0.91157 0.91491 0.91469 0.94625 0.93528 0.98047 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 12.73 55.43 0.71 -25.13 16 2 C 0.07 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 21.13 27.53 -169.99 -4.68 16.45 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.13 6.11 56.52 0.35 -5.79 16 7 C -0.48 -12.78 5.51 -98.92 -0.55 -13.33 16 8 C -0.02 -0.40 5.59 -27.49 -0.15 -0.56 16 9 C -0.13 -2.63 5.18 -26.64 -0.14 -2.77 16 10 C 0.10 1.89 2.17 -67.75 -0.15 1.74 16 11 H 0.06 1.25 7.08 -51.93 -0.37 0.89 16 12 N -0.69 -10.63 6.05 -99.80 -0.60 -11.24 16 13 C 0.09 1.14 2.24 -67.74 -0.15 0.98 16 14 C -0.12 -1.23 5.14 -26.67 -0.14 -1.37 16 15 C -0.11 -0.96 5.10 -26.86 -0.14 -1.10 16 16 C -0.12 -1.11 0.79 -154.37 -0.12 -1.23 16 17 C 0.04 0.41 8.01 37.37 0.30 0.71 16 18 O -0.38 -4.41 12.36 -35.23 -0.44 -4.84 16 19 C 0.04 0.34 8.35 37.39 0.31 0.65 16 20 C -0.10 -0.99 5.05 -26.87 -0.14 -1.13 16 21 C -0.10 -1.28 5.35 -26.66 -0.14 -1.43 16 22 C -0.09 -1.99 5.54 -26.62 -0.15 -2.13 16 23 C 0.01 0.22 5.97 -27.47 -0.16 0.06 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.03 0.74 4.59 -51.93 -0.24 0.50 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.47 7.35 -51.93 -0.38 0.08 16 29 H 0.33 4.99 8.07 -39.29 -0.32 4.68 16 30 H 0.04 0.59 7.06 -51.93 -0.37 0.23 16 31 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 32 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 33 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.09 0.87 7.54 -51.93 -0.39 0.48 16 37 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 38 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.74 8.07 -51.93 -0.42 0.32 16 41 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 42 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 46 H 0.06 1.56 7.08 -51.93 -0.37 1.19 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -28.27 339.99 -9.79 -38.06 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.29 Total: 0.51 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.61 Total: -18.94 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.10 Total: -36.36 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.44 Total: -4.84 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.68 Total: 16.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.27 -9.79 -38.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257897678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.135 kcal (2) G-P(sol) polarization free energy of solvation -28.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds