Wall clock time and date at job start Tue Mar 31 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99955 * 2 1 4 4 H 1.48506 * 109.47289 * 239.99965 * 3 2 1 5 5 H 1.48494 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47068 * 120.00518 * 3 2 1 7 7 C 1.37879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00042 * 174.04347 * 7 2 1 9 9 C 1.50701 * 119.99898 * 354.04379 * 7 2 1 10 10 N 1.46900 * 110.01367 * 301.95713 * 9 7 2 11 11 C 1.46896 * 111.00094 * 301.58552 * 10 9 7 12 12 C 1.52981 * 109.43478 * 238.26756 * 11 10 9 13 13 C 1.53163 * 109.41973 * 178.15272 * 12 11 10 14 14 C 1.52588 * 109.24723 * 57.65258 * 13 12 11 15 15 C 1.53548 * 113.68887 * 172.23880 * 14 13 12 16 16 O 1.44270 * 85.36093 * 223.41487 * 15 14 13 17 17 C 1.44272 * 93.42767 * 23.84917 * 16 15 14 18 18 C 1.52574 * 113.20856 * 303.96231 * 14 13 12 19 19 C 1.52973 * 109.43057 * 118.03401 * 11 10 9 20 20 C 1.54268 * 110.03115 * 63.34372 * 9 7 2 21 21 C 1.54970 * 104.15461 * 95.75624 * 20 9 7 22 22 C 1.54887 * 102.78043 * 37.88703 * 21 20 9 23 23 C 1.53869 * 110.03461 * 180.56395 * 9 7 2 24 24 H 0.97005 * 120.00171 * 5.07436 * 1 2 3 25 25 H 1.00901 * 111.00205 * 65.54583 * 10 9 7 26 26 H 1.09003 * 109.39504 * 358.14856 * 11 10 9 27 27 H 1.08992 * 109.47694 * 58.16643 * 12 11 10 28 28 H 1.09001 * 109.47794 * 298.13866 * 12 11 10 29 29 H 1.08997 * 109.50858 * 297.71779 * 13 12 11 30 30 H 1.09003 * 109.54226 * 177.60412 * 13 12 11 31 31 H 1.09002 * 113.88821 * 337.51928 * 15 14 13 32 32 H 1.08995 * 113.88780 * 109.30492 * 15 14 13 33 33 H 1.09004 * 113.88832 * 222.05062 * 17 16 15 34 34 H 1.08993 * 113.89176 * 90.26014 * 17 16 15 35 35 H 1.08997 * 109.50566 * 175.96837 * 18 14 13 36 36 H 1.08999 * 109.50874 * 296.10074 * 18 14 13 37 37 H 1.09002 * 109.48041 * 301.82069 * 19 11 10 38 38 H 1.08999 * 109.48493 * 61.85976 * 19 11 10 39 39 H 1.08997 * 110.49066 * 214.40000 * 20 9 7 40 40 H 1.08998 * 110.48709 * 337.04651 * 20 9 7 41 41 H 1.09003 * 110.71970 * 279.56863 * 21 20 9 42 42 H 1.09004 * 110.76264 * 156.22261 * 21 20 9 43 43 H 1.08995 * 110.48635 * 203.40093 * 22 21 20 44 44 H 1.09004 * 110.48388 * 80.76207 * 22 21 20 45 45 H 1.09007 * 110.03123 * 359.95382 * 23 9 7 46 46 H 1.08999 * 110.03284 * 121.38127 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0802 -1.1965 -0.0976 9 6 1.2571 -2.4957 0.1343 10 7 0.4820 -2.5035 1.3822 11 6 1.3570 -2.3124 2.5466 12 6 1.2085 -3.5031 3.4956 13 6 2.1549 -3.3259 4.6868 14 6 1.8392 -2.0081 5.3884 15 6 2.5996 -1.8143 6.7082 16 8 1.3404 -1.3395 7.2282 17 6 0.5653 -2.0557 6.2445 18 6 1.9074 -0.8005 4.4585 19 6 0.9655 -1.0234 3.2713 20 6 0.3171 -2.6928 -1.0729 21 6 1.1338 -3.5771 -2.0488 22 6 1.8718 -4.5488 -1.0948 23 6 2.2454 -3.6749 0.1203 24 1 -0.4850 0.8368 -0.0743 25 1 -0.2470 -1.8063 1.3594 26 1 2.3924 -2.2411 2.2135 27 1 1.4582 -4.4227 2.9667 28 1 0.1802 -3.5569 3.8531 29 1 3.1860 -3.3124 4.3337 30 1 2.0202 -4.1516 5.3855 31 1 2.9416 -2.7448 7.1613 32 1 3.3749 -1.0496 6.6626 33 1 -0.2647 -1.4813 5.8330 34 1 0.2789 -3.0606 6.5543 35 1 1.6033 0.0945 5.0013 36 1 2.9278 -0.6777 4.0955 37 1 1.0428 -0.1816 2.5830 38 1 -0.0600 -1.1058 3.6314 39 1 -0.5950 -3.2050 -0.7666 40 1 0.0807 -1.7333 -1.5330 41 1 1.8457 -2.9737 -2.6122 42 1 0.4721 -4.1236 -2.7209 43 1 2.7691 -4.9433 -1.5715 44 1 1.2111 -5.3611 -0.7918 45 1 3.2657 -3.3058 0.0152 46 1 2.1500 -4.2530 1.0394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257904933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:00 Heat of formation + Delta-G solvation = -35.354216 kcal Electronic energy + Delta-G solvation = -23999.764230 eV Core-core repulsion = 20889.134431 eV Total energy + Delta-G solvation = -3110.629799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.85335 -38.07908 -36.07580 -32.99773 -31.73426 -30.40368 -28.86923 -27.46978 -26.51308 -26.24053 -24.26744 -23.21187 -22.26944 -20.27790 -19.37240 -18.32870 -18.11681 -16.31263 -15.99683 -15.76479 -15.43618 -14.83019 -14.56481 -14.14829 -13.78503 -13.65731 -13.14379 -12.89259 -12.48375 -12.28482 -12.07805 -11.95644 -11.77530 -11.63452 -11.35180 -10.97105 -10.69921 -10.60634 -10.56347 -10.38065 -10.21976 -10.07892 -9.92676 -9.78617 -9.73907 -9.46666 -9.43340 -9.24014 -9.21145 -9.09283 -8.36120 -6.93716 -5.99985 -4.15570 3.23009 3.29539 3.32989 3.85078 4.34853 4.37405 4.89187 5.13734 5.21136 5.31677 5.37912 5.47278 5.67243 5.72010 5.78192 5.82931 5.86087 5.89528 5.93585 6.00725 6.03424 6.13341 6.26086 6.29319 6.38828 6.41377 6.53011 6.57728 6.60633 6.63763 6.69426 6.79023 6.83008 6.85082 6.97502 7.04671 7.17986 7.26616 7.28970 7.41413 7.59947 7.77626 7.90580 8.28218 8.77002 8.93285 9.18436 9.53592 10.94177 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.006861 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.182328 B = 4079.979569 C = 5154.269301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.050 0.950 9 C 0.235 3.765 10 N -0.682 5.682 11 C 0.106 3.894 12 C -0.104 4.104 13 C -0.110 4.110 14 C -0.115 4.115 15 C 0.036 3.964 16 O -0.386 6.386 17 C 0.043 3.957 18 C -0.092 4.092 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.263 0.737 25 H 0.354 0.646 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.038 0.962 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.041 0.959 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -5.404 7.141 9.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.129 4.129 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.068 0.932 9 C 0.145 3.855 10 N -0.314 5.314 11 C -0.005 4.005 12 C -0.143 4.143 13 C -0.148 4.148 14 C -0.115 4.115 15 C -0.041 4.041 16 O -0.305 6.305 17 C -0.034 4.034 18 C -0.130 4.130 19 C -0.164 4.164 20 C -0.132 4.132 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.176 0.824 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.141 -5.780 7.461 9.677 hybrid contribution 0.831 1.897 -0.258 2.088 sum 2.972 -3.883 7.203 8.706 Atomic orbital electron populations 1.69743 1.05487 1.26939 1.50384 1.24871 0.94736 0.98458 0.94789 0.86911 0.79987 0.83958 0.78710 1.20465 1.21310 1.20229 1.21792 0.93458 0.91310 1.50013 0.93193 1.19060 0.89149 0.90671 0.86614 1.61110 1.14254 1.54346 1.01676 1.21105 0.98079 0.90610 0.90744 1.21642 0.98149 0.99634 0.94836 1.21550 1.00560 0.94872 0.97808 1.23258 0.94977 0.97933 0.95301 1.24028 0.88751 0.99157 0.92118 1.89638 1.17893 1.67297 1.55688 1.24001 0.95758 0.96658 0.86937 1.21273 1.00983 0.94973 0.95808 1.22011 0.97597 1.00573 0.96199 1.22239 0.96305 0.98690 0.95979 1.22438 0.98633 0.97386 0.97414 1.22265 0.98438 0.97663 0.97242 1.22299 0.99153 0.97109 0.96245 0.92687 0.82420 0.91830 0.92257 0.92817 0.91848 0.92504 0.90583 0.89588 0.89223 0.90529 0.92230 0.91657 0.90413 0.93135 0.94371 0.90392 0.92463 0.93998 0.93904 0.93063 0.93514 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.48 10.13 55.43 0.56 -21.92 16 2 C 0.07 1.83 3.78 -17.82 -0.07 1.77 16 3 Si 0.88 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.53 -13.08 6.69 -34.44 -0.23 -13.31 16 8 H 0.05 1.29 7.33 -52.49 -0.38 0.91 16 9 C 0.23 5.29 0.47 -131.64 -0.06 5.23 16 10 N -0.68 -14.76 5.88 -93.11 -0.55 -15.31 16 11 C 0.11 2.03 1.30 -67.74 -0.09 1.94 16 12 C -0.10 -1.69 5.38 -26.66 -0.14 -1.83 16 13 C -0.11 -1.50 5.10 -26.86 -0.14 -1.64 16 14 C -0.11 -1.60 0.79 -154.37 -0.12 -1.72 16 15 C 0.04 0.46 8.36 37.39 0.31 0.78 16 16 O -0.39 -5.88 12.36 -35.23 -0.44 -6.31 16 17 C 0.04 0.59 7.99 37.39 0.30 0.89 16 18 C -0.09 -1.50 5.05 -26.86 -0.14 -1.63 16 19 C -0.13 -2.36 4.95 -26.65 -0.13 -2.49 16 20 C -0.09 -2.11 5.56 -25.03 -0.14 -2.25 16 21 C -0.12 -2.37 6.91 -24.70 -0.17 -2.54 16 22 C -0.12 -2.18 6.83 -25.07 -0.17 -2.35 16 23 C -0.11 -2.25 5.32 -25.62 -0.14 -2.38 16 24 H 0.26 6.59 8.32 -40.82 -0.34 6.25 16 25 H 0.35 8.39 6.29 -39.29 -0.25 8.15 16 26 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 27 H 0.06 0.98 6.97 -51.93 -0.36 0.62 16 28 H 0.05 0.87 8.02 -51.93 -0.42 0.45 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 32 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.09 1.25 7.52 -51.93 -0.39 0.86 16 34 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 35 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.71 6.81 -51.93 -0.35 1.36 16 38 H 0.05 0.93 7.53 -51.93 -0.39 0.54 16 39 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.08 1.96 6.38 -51.93 -0.33 1.63 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.98 7.37 -51.92 -0.38 0.59 16 46 H 0.05 1.01 6.10 -51.93 -0.32 0.70 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -24.88 335.97 -9.60 -34.47 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -8.09 Total: 10.38 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.13 Total: -21.56 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.01 Total: -37.23 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.44 Total: -6.31 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -24.88 -9.60 -34.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257904933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.879 kcal (2) G-P(sol) polarization free energy of solvation -24.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds