Wall clock time and date at job start Tue Mar 31 2020 01:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99955 * 2 1 4 4 H 1.48506 * 109.47289 * 239.99965 * 3 2 1 5 5 H 1.48494 * 109.47590 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47068 * 120.00518 * 3 2 1 7 7 C 1.37879 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00042 * 174.04347 * 7 2 1 9 9 C 1.50701 * 119.99898 * 354.04379 * 7 2 1 10 10 N 1.46900 * 110.01367 * 301.95713 * 9 7 2 11 11 C 1.46896 * 111.00094 * 301.58552 * 10 9 7 12 12 C 1.52981 * 109.43478 * 238.26756 * 11 10 9 13 13 C 1.53163 * 109.41973 * 178.15272 * 12 11 10 14 14 C 1.52588 * 109.24723 * 57.65258 * 13 12 11 15 15 C 1.53548 * 113.68887 * 172.23880 * 14 13 12 16 16 O 1.44270 * 85.36093 * 223.41487 * 15 14 13 17 17 C 1.44272 * 93.42767 * 23.84917 * 16 15 14 18 18 C 1.52574 * 113.20856 * 303.96231 * 14 13 12 19 19 C 1.52973 * 109.43057 * 118.03401 * 11 10 9 20 20 C 1.54268 * 110.03115 * 63.34372 * 9 7 2 21 21 C 1.54970 * 104.15461 * 95.75624 * 20 9 7 22 22 C 1.54887 * 102.78043 * 37.88703 * 21 20 9 23 23 C 1.53869 * 110.03461 * 180.56395 * 9 7 2 24 24 H 0.97005 * 120.00171 * 5.07436 * 1 2 3 25 25 H 1.00901 * 111.00205 * 65.54583 * 10 9 7 26 26 H 1.09003 * 109.39504 * 358.14856 * 11 10 9 27 27 H 1.08992 * 109.47694 * 58.16643 * 12 11 10 28 28 H 1.09001 * 109.47794 * 298.13866 * 12 11 10 29 29 H 1.08997 * 109.50858 * 297.71779 * 13 12 11 30 30 H 1.09003 * 109.54226 * 177.60412 * 13 12 11 31 31 H 1.09002 * 113.88821 * 337.51928 * 15 14 13 32 32 H 1.08995 * 113.88780 * 109.30492 * 15 14 13 33 33 H 1.09004 * 113.88832 * 222.05062 * 17 16 15 34 34 H 1.08993 * 113.89176 * 90.26014 * 17 16 15 35 35 H 1.08997 * 109.50566 * 175.96837 * 18 14 13 36 36 H 1.08999 * 109.50874 * 296.10074 * 18 14 13 37 37 H 1.09002 * 109.48041 * 301.82069 * 19 11 10 38 38 H 1.08999 * 109.48493 * 61.85976 * 19 11 10 39 39 H 1.08997 * 110.49066 * 214.40000 * 20 9 7 40 40 H 1.08998 * 110.48709 * 337.04651 * 20 9 7 41 41 H 1.09003 * 110.71970 * 279.56863 * 21 20 9 42 42 H 1.09004 * 110.76264 * 156.22261 * 21 20 9 43 43 H 1.08995 * 110.48635 * 203.40093 * 22 21 20 44 44 H 1.09004 * 110.48388 * 80.76207 * 22 21 20 45 45 H 1.09007 * 110.03123 * 359.95382 * 23 9 7 46 46 H 1.08999 * 110.03284 * 121.38127 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0802 -1.1965 -0.0976 9 6 1.2571 -2.4957 0.1343 10 7 0.4820 -2.5035 1.3822 11 6 1.3570 -2.3124 2.5466 12 6 1.2085 -3.5031 3.4956 13 6 2.1549 -3.3259 4.6868 14 6 1.8392 -2.0081 5.3884 15 6 2.5996 -1.8143 6.7082 16 8 1.3404 -1.3395 7.2282 17 6 0.5653 -2.0557 6.2445 18 6 1.9074 -0.8005 4.4585 19 6 0.9655 -1.0234 3.2713 20 6 0.3171 -2.6928 -1.0729 21 6 1.1338 -3.5771 -2.0488 22 6 1.8718 -4.5488 -1.0948 23 6 2.2454 -3.6749 0.1203 24 1 -0.4850 0.8368 -0.0743 25 1 -0.2470 -1.8063 1.3594 26 1 2.3924 -2.2411 2.2135 27 1 1.4582 -4.4227 2.9667 28 1 0.1802 -3.5569 3.8531 29 1 3.1860 -3.3124 4.3337 30 1 2.0202 -4.1516 5.3855 31 1 2.9416 -2.7448 7.1613 32 1 3.3749 -1.0496 6.6626 33 1 -0.2647 -1.4813 5.8330 34 1 0.2789 -3.0606 6.5543 35 1 1.6033 0.0945 5.0013 36 1 2.9278 -0.6777 4.0955 37 1 1.0428 -0.1816 2.5830 38 1 -0.0600 -1.1058 3.6314 39 1 -0.5950 -3.2050 -0.7666 40 1 0.0807 -1.7333 -1.5330 41 1 1.8457 -2.9737 -2.6122 42 1 0.4721 -4.1236 -2.7209 43 1 2.7691 -4.9433 -1.5715 44 1 1.2111 -5.3611 -0.7918 45 1 3.2657 -3.3058 0.0152 46 1 2.1500 -4.2530 1.0394 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257904933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:59 Heat of formation + Delta-G solvation = -48.720987 kcal Electronic energy + Delta-G solvation = -24000.343857 eV Core-core repulsion = 20889.134431 eV Total energy + Delta-G solvation = -3111.209426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98821 -39.71164 -37.50131 -34.70896 -33.39513 -31.73987 -30.32957 -29.14835 -27.99321 -27.45254 -25.95799 -24.61454 -23.62594 -21.77676 -20.89839 -20.07792 -19.35851 -18.14217 -17.17690 -16.85746 -16.74438 -16.57885 -16.15259 -15.72121 -15.35637 -15.01454 -14.58301 -14.34206 -13.97958 -13.88607 -13.39566 -13.28136 -13.14011 -13.10548 -13.04570 -12.74335 -12.45418 -12.33127 -12.06401 -11.93361 -11.69262 -11.48130 -11.41771 -11.31007 -11.17538 -11.09796 -10.95920 -10.90234 -10.68612 -10.46968 -10.23392 -8.72531 -7.92759 -6.14925 1.32892 1.38041 1.40963 2.41047 2.80354 3.18019 3.26874 3.73687 3.95212 4.01634 4.21933 4.25705 4.29658 4.37627 4.39962 4.44817 4.53769 4.55946 4.64602 4.68218 4.73232 4.92886 4.96832 5.03276 5.04989 5.06010 5.12366 5.12840 5.21986 5.23131 5.24898 5.28741 5.32324 5.35759 5.40167 5.48324 5.58733 5.61279 5.73651 5.75436 5.78165 5.86771 6.06992 6.38012 6.87248 7.12511 7.32096 7.57221 8.95658 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.006861 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.182328 B = 4079.979569 C = 5154.269301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.533 4.533 8 H 0.034 0.966 9 C 0.227 3.773 10 N -0.681 5.681 11 C 0.109 3.891 12 C -0.096 4.096 13 C -0.102 4.102 14 C -0.116 4.116 15 C 0.043 3.957 16 O -0.410 6.410 17 C 0.045 3.955 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.106 4.106 24 H 0.259 0.741 25 H 0.339 0.661 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.072 -7.271 8.347 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.153 4.153 3 Si 0.743 3.257 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.573 4.573 8 H 0.052 0.948 9 C 0.137 3.863 10 N -0.311 5.311 11 C -0.001 4.001 12 C -0.134 4.134 13 C -0.140 4.140 14 C -0.116 4.116 15 C -0.033 4.033 16 O -0.329 6.329 17 C -0.032 4.032 18 C -0.125 4.125 19 C -0.156 4.156 20 C -0.131 4.131 21 C -0.154 4.154 22 C -0.148 4.148 23 C -0.145 4.145 24 H 0.069 0.931 25 H 0.159 0.841 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.831 -7.656 8.670 11.908 hybrid contribution 0.615 2.529 -0.654 2.684 sum 3.446 -5.127 8.015 10.120 Atomic orbital electron populations 1.69827 1.06011 1.26886 1.50857 1.25221 0.95182 1.00069 0.94857 0.86310 0.79113 0.82028 0.78294 1.20691 1.21386 1.20344 1.21949 0.92751 0.92786 1.49841 0.94820 1.19141 0.89505 0.90553 0.87073 1.61225 1.14173 1.53481 1.02212 1.21131 0.96078 0.92334 0.90598 1.21522 0.99121 0.97704 0.95057 1.21514 0.99755 0.95584 0.97122 1.23183 0.96198 0.96781 0.95487 1.24181 0.88067 1.00530 0.90516 1.89625 1.19108 1.68042 1.56139 1.24095 0.95155 0.97527 0.86401 1.21172 0.99681 0.96419 0.95231 1.21858 0.98309 0.98995 0.96466 1.22138 0.96628 0.97634 0.96705 1.22395 0.98492 0.97231 0.97309 1.22229 0.99511 0.97215 0.95808 1.22216 0.97802 0.96660 0.97780 0.93104 0.84119 0.94235 0.92337 0.92593 0.91747 0.89508 0.87816 0.89052 0.90178 0.88207 0.92524 0.92305 0.94188 0.93220 0.94879 0.93657 0.93373 0.91690 0.91644 0.91609 0.94615 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.91 10.13 21.45 0.22 -46.69 16 2 C 0.05 2.43 3.78 84.66 0.32 2.75 16 3 Si 0.91 42.39 29.54 68.60 2.03 44.42 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -27.21 6.69 25.60 0.17 -27.04 16 8 H 0.03 1.79 7.33 -2.91 -0.02 1.77 16 9 C 0.23 10.34 0.47 3.50 0.00 10.34 16 10 N -0.68 -29.78 5.88 -448.48 -2.64 -32.42 16 11 C 0.11 4.21 1.30 44.90 0.06 4.27 16 12 C -0.10 -2.93 5.38 30.64 0.16 -2.76 16 13 C -0.10 -2.48 5.10 30.51 0.16 -2.33 16 14 C -0.12 -3.00 0.79 -52.09 -0.04 -3.04 16 15 C 0.04 0.97 8.36 72.13 0.60 1.57 16 16 O -0.41 -11.51 12.36 -148.98 -1.84 -13.35 16 17 C 0.04 1.12 7.99 72.13 0.58 1.69 16 18 C -0.09 -2.79 5.05 30.51 0.15 -2.63 16 19 C -0.12 -4.51 4.95 30.64 0.15 -4.36 16 20 C -0.09 -4.20 5.56 31.70 0.18 -4.02 16 21 C -0.12 -4.41 6.91 31.91 0.22 -4.19 16 22 C -0.11 -3.79 6.83 31.67 0.22 -3.57 16 23 C -0.11 -4.25 5.32 31.32 0.17 -4.09 16 24 H 0.26 13.39 8.32 -92.70 -0.77 12.62 16 25 H 0.34 16.51 6.29 -89.69 -0.56 15.95 16 26 H 0.04 1.71 6.32 -2.39 -0.02 1.70 16 27 H 0.06 1.81 6.97 -2.39 -0.02 1.79 16 28 H 0.06 1.69 8.02 -2.39 -0.02 1.68 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 31 H 0.10 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 33 H 0.08 2.14 7.52 -2.39 -0.02 2.12 16 34 H 0.10 2.05 8.05 -2.39 -0.02 2.03 16 35 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.82 6.81 -2.39 -0.02 1.80 16 38 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 39 H 0.03 1.49 8.05 -2.39 -0.02 1.47 16 40 H 0.04 2.33 6.38 -2.39 -0.02 2.32 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 45 H 0.04 1.47 7.37 -2.38 -0.02 1.46 16 46 H 0.06 2.21 6.10 -2.39 -0.01 2.20 16 Total: -1.00 -54.34 335.97 1.24 -53.09 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: 0.38 Total: 32.36 kcal Atomic # 6 Polarization: -40.51 SS G_CDS: 3.10 Total: -37.41 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.42 Total: -79.11 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.84 Total: -13.35 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -54.34 1.24 -53.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257904933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.372 kcal (2) G-P(sol) polarization free energy of solvation -54.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds