Wall clock time and date at job start Tue Mar 31 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48499 * 109.46995 * 269.99929 * 3 2 1 5 5 H 1.48507 * 109.46935 * 29.99824 * 3 2 1 6 6 H 1.48494 * 109.47212 * 149.99578 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99586 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52141 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27715 * 182.38164 * 10 9 7 12 12 N 1.46842 * 109.52685 * 59.17772 * 11 10 9 13 13 C 1.46894 * 111.00102 * 174.16130 * 12 11 10 14 14 C 1.52983 * 109.43152 * 179.97438 * 13 12 11 15 15 C 1.53199 * 109.39777 * 178.09578 * 14 13 12 16 16 C 1.52406 * 109.26893 * 57.39091 * 15 14 13 17 17 C 1.52735 * 114.41244 * 78.25683 * 16 15 14 18 18 O 1.43475 * 88.30257 * 87.19506 * 17 16 15 19 19 C 1.43469 * 88.47544 * 27.57515 * 18 17 16 20 20 C 1.52401 * 113.58425 * 304.35991 * 16 15 14 21 21 C 1.52976 * 109.39044 * 59.77043 * 13 12 11 22 22 C 1.46846 * 111.19682 * 298.25843 * 12 11 10 23 23 C 1.53038 * 109.52598 * 61.74347 * 22 12 11 24 24 H 0.97006 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52565 * 300.12620 * 9 7 2 26 26 H 1.08996 * 109.50338 * 62.43429 * 10 9 7 27 27 H 1.08999 * 109.53307 * 302.33835 * 10 9 7 28 28 H 1.09007 * 109.45977 * 299.16069 * 11 10 9 29 29 H 1.09002 * 109.45119 * 179.19117 * 11 10 9 30 30 H 1.09000 * 109.43145 * 299.90184 * 13 12 11 31 31 H 1.08993 * 109.48292 * 58.12324 * 14 13 12 32 32 H 1.08993 * 109.49315 * 298.08302 * 14 13 12 33 33 H 1.09004 * 109.50565 * 297.45310 * 15 14 13 34 34 H 1.09000 * 109.53836 * 177.34700 * 15 14 13 35 35 H 1.09005 * 113.41694 * 332.33591 * 17 16 15 36 36 H 1.08998 * 113.46254 * 202.06385 * 17 16 15 37 37 H 1.09001 * 113.41256 * 87.28609 * 19 18 17 38 38 H 1.09003 * 113.41195 * 217.55769 * 19 18 17 39 39 H 1.08999 * 109.50675 * 175.57009 * 20 16 15 40 40 H 1.09003 * 109.50821 * 295.69994 * 20 16 15 41 41 H 1.09010 * 109.48060 * 301.91510 * 21 13 12 42 42 H 1.09003 * 109.48579 * 61.94058 * 21 13 12 43 43 H 1.09006 * 109.46317 * 181.75493 * 22 12 11 44 44 H 1.08995 * 109.46401 * 301.72639 * 22 12 11 45 45 H 1.08995 * 109.50437 * 180.87872 * 23 22 12 46 46 H 1.09003 * 109.53151 * 60.77743 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4750 -4.9852 -0.0595 12 7 0.6532 -5.0195 -1.2759 13 6 0.0069 -6.3286 -1.4378 14 6 -0.8387 -6.3246 -2.7127 15 6 -1.4744 -7.7050 -2.9060 16 6 -2.3073 -8.0517 -1.6776 17 6 -3.6709 -7.3657 -1.6254 18 8 -4.2010 -8.4555 -2.3934 19 6 -3.1799 -9.2949 -1.8357 20 6 -1.5224 -7.9933 -0.3725 21 6 -0.8863 -6.6071 -0.2275 22 6 -0.3405 -3.9384 -1.2761 23 6 0.3752 -2.5858 -1.2525 24 1 -0.4850 0.8401 -0.0004 25 1 0.6219 -2.5566 0.8889 26 1 2.8428 -3.6321 0.9113 27 1 2.8995 -3.5844 -0.8674 28 1 0.8314 -5.0705 0.8161 29 1 2.1804 -5.8160 -0.0741 30 1 0.7701 -7.1033 -1.5109 31 1 -0.2048 -6.0932 -3.5686 32 1 -1.6226 -5.5721 -2.6268 33 1 -0.6909 -8.4514 -3.0370 34 1 -2.1149 -7.6911 -3.7879 35 1 -3.6964 -6.4117 -2.1522 36 1 -4.0864 -7.3021 -0.6197 37 1 -3.4632 -9.7489 -0.8861 38 1 -2.7785 -10.0184 -2.5453 39 1 -2.1956 -8.1743 0.4654 40 1 -0.7412 -8.7534 -0.3833 41 1 -0.2862 -6.5763 0.6820 42 1 -1.6696 -5.8511 -0.1720 43 1 -0.9539 -4.0090 -2.1744 44 1 -0.9755 -4.0286 -0.3949 45 1 -0.3628 -1.7839 -1.2369 46 1 0.9998 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257908812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:49 Heat of formation + Delta-G solvation = -26.957443 kcal Electronic energy + Delta-G solvation = -23226.577486 eV Core-core repulsion = 20116.311798 eV Total energy + Delta-G solvation = -3110.265688 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57751 -38.98883 -36.16025 -33.49127 -31.52623 -31.06603 -29.72805 -29.04683 -26.47733 -25.91271 -24.26233 -23.11216 -22.32344 -21.73580 -20.08975 -18.71009 -18.05516 -16.51448 -16.33204 -16.16158 -15.75500 -15.50132 -14.52797 -14.22606 -14.20267 -13.71385 -13.64088 -13.35896 -12.96456 -12.67163 -12.48571 -12.27402 -12.22446 -11.97237 -11.80103 -11.32911 -11.15743 -10.93117 -10.86905 -10.71477 -10.54153 -10.42747 -10.25184 -10.20650 -10.00974 -9.82588 -9.78420 -9.36841 -8.92238 -8.65496 -8.26562 -7.62987 -5.95036 -4.00117 3.32720 3.39360 3.42631 3.78803 3.88224 4.39973 4.46972 4.53326 4.77185 4.96981 5.05055 5.09551 5.16205 5.26449 5.34756 5.37189 5.41695 5.45064 5.58141 5.63896 5.71774 5.82584 5.85648 5.87371 5.91477 5.97205 5.98505 6.06956 6.15232 6.20696 6.25021 6.34443 6.41539 6.48849 6.67176 6.68691 6.89763 7.11787 7.21043 7.48645 7.66628 7.76002 7.87529 8.08339 8.19417 8.51430 9.03614 9.64146 11.11053 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.003812 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.594911 B = 7342.713487 C = 7671.823877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.529 5.529 13 C 0.086 3.914 14 C -0.112 4.112 15 C -0.089 4.089 16 C -0.122 4.122 17 C 0.036 3.964 18 O -0.372 6.372 19 C 0.034 3.966 20 C -0.100 4.100 21 C -0.153 4.153 22 C 0.053 3.947 23 C -0.104 4.104 24 H 0.259 0.741 25 H 0.019 0.981 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.026 0.974 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.023 0.977 45 H 0.090 0.910 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -17.263 -2.596 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.252 5.252 13 C -0.023 4.023 14 C -0.150 4.150 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.041 4.041 18 O -0.290 6.290 19 C -0.043 4.043 20 C -0.139 4.139 21 C -0.192 4.192 22 C -0.074 4.074 23 C -0.143 4.143 24 H 0.068 0.932 25 H 0.037 0.963 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.109 0.891 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.609 -17.071 -3.185 17.967 hybrid contribution -0.054 0.811 0.898 1.211 sum -4.663 -16.261 -2.286 17.070 Atomic orbital electron populations 1.69881 1.05852 1.26230 1.51193 1.24962 0.94826 0.98959 0.95243 0.86647 0.79888 0.83713 0.78053 1.20744 1.21353 1.20015 1.21223 0.92869 0.90736 1.49990 0.92819 1.18670 0.92679 0.91694 0.93948 1.21680 0.98711 0.93898 1.00164 1.22114 0.95627 0.99022 0.90058 1.62245 1.23175 1.01792 1.38011 1.21681 0.94663 0.92448 0.93464 1.21638 0.99127 0.96069 0.98120 1.21168 0.98290 0.97814 0.95402 1.22733 0.95638 0.96195 0.97707 1.23707 0.91208 0.92695 0.96443 1.89864 1.53622 1.23115 1.62419 1.23687 0.87080 0.94695 0.98792 1.21350 0.99194 0.98093 0.95213 1.22258 1.00177 0.96627 1.00133 1.22334 0.93407 0.92956 0.98707 1.21659 1.00145 0.93168 0.99299 0.93157 0.96280 0.93364 0.92583 0.95556 0.92697 0.90803 0.90779 0.91499 0.91310 0.91140 0.89481 0.90400 0.90490 0.89805 0.91909 0.91468 0.91512 0.91552 0.92357 0.95887 0.89127 0.93958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.37 55.43 0.63 -24.79 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.04 8.57 -34.44 -0.29 -14.34 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.23 5.32 -26.65 -0.14 -2.38 16 11 C 0.06 1.05 4.88 -3.84 -0.02 1.03 16 12 N -0.53 -9.03 4.68 -226.72 -1.06 -10.09 16 13 C 0.09 1.16 2.24 -67.74 -0.15 1.01 16 14 C -0.11 -1.37 4.75 -26.64 -0.13 -1.49 16 15 C -0.09 -0.90 5.15 -26.93 -0.14 -1.04 16 16 C -0.12 -1.20 0.90 -155.40 -0.14 -1.34 16 17 C 0.04 0.39 7.80 25.11 0.20 0.59 16 18 O -0.37 -4.53 12.56 -35.23 -0.44 -4.98 16 19 C 0.03 0.32 7.93 25.10 0.20 0.52 16 20 C -0.10 -0.98 5.18 -26.93 -0.14 -1.12 16 21 C -0.15 -1.89 4.48 -26.64 -0.12 -2.01 16 22 C 0.05 1.01 4.67 -3.83 -0.02 0.99 16 23 C -0.10 -2.45 5.12 -26.65 -0.14 -2.59 16 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.03 0.47 6.58 -51.93 -0.34 0.13 16 29 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.88 5.90 -51.93 -0.31 0.57 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 35 H 0.09 0.96 7.69 -51.93 -0.40 0.56 16 36 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 37 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.06 0.56 8.05 -51.93 -0.42 0.15 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.87 6.42 -51.92 -0.33 0.54 16 42 H 0.07 0.91 6.73 -51.93 -0.35 0.56 16 43 H 0.06 1.03 5.94 -51.93 -0.31 0.72 16 44 H 0.02 0.45 6.75 -51.93 -0.35 0.10 16 45 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -28.45 335.69 -10.30 -38.76 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.15 Total: -0.72 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.32 Total: -19.57 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.43 Total: -34.88 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.44 Total: -4.98 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.45 -10.30 -38.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257908812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.798 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds