Wall clock time and date at job start Tue Mar 31 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00152 * 2 1 4 4 H 1.48499 * 109.46995 * 269.99929 * 3 2 1 5 5 H 1.48507 * 109.46935 * 29.99824 * 3 2 1 6 6 H 1.48494 * 109.47212 * 149.99578 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99586 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00014 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52141 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27715 * 182.38164 * 10 9 7 12 12 N 1.46842 * 109.52685 * 59.17772 * 11 10 9 13 13 C 1.46894 * 111.00102 * 174.16130 * 12 11 10 14 14 C 1.52983 * 109.43152 * 179.97438 * 13 12 11 15 15 C 1.53199 * 109.39777 * 178.09578 * 14 13 12 16 16 C 1.52406 * 109.26893 * 57.39091 * 15 14 13 17 17 C 1.52735 * 114.41244 * 78.25683 * 16 15 14 18 18 O 1.43475 * 88.30257 * 87.19506 * 17 16 15 19 19 C 1.43469 * 88.47544 * 27.57515 * 18 17 16 20 20 C 1.52401 * 113.58425 * 304.35991 * 16 15 14 21 21 C 1.52976 * 109.39044 * 59.77043 * 13 12 11 22 22 C 1.46846 * 111.19682 * 298.25843 * 12 11 10 23 23 C 1.53038 * 109.52598 * 61.74347 * 22 12 11 24 24 H 0.97006 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52565 * 300.12620 * 9 7 2 26 26 H 1.08996 * 109.50338 * 62.43429 * 10 9 7 27 27 H 1.08999 * 109.53307 * 302.33835 * 10 9 7 28 28 H 1.09007 * 109.45977 * 299.16069 * 11 10 9 29 29 H 1.09002 * 109.45119 * 179.19117 * 11 10 9 30 30 H 1.09000 * 109.43145 * 299.90184 * 13 12 11 31 31 H 1.08993 * 109.48292 * 58.12324 * 14 13 12 32 32 H 1.08993 * 109.49315 * 298.08302 * 14 13 12 33 33 H 1.09004 * 109.50565 * 297.45310 * 15 14 13 34 34 H 1.09000 * 109.53836 * 177.34700 * 15 14 13 35 35 H 1.09005 * 113.41694 * 332.33591 * 17 16 15 36 36 H 1.08998 * 113.46254 * 202.06385 * 17 16 15 37 37 H 1.09001 * 113.41256 * 87.28609 * 19 18 17 38 38 H 1.09003 * 113.41195 * 217.55769 * 19 18 17 39 39 H 1.08999 * 109.50675 * 175.57009 * 20 16 15 40 40 H 1.09003 * 109.50821 * 295.69994 * 20 16 15 41 41 H 1.09010 * 109.48060 * 301.91510 * 21 13 12 42 42 H 1.09003 * 109.48579 * 61.94058 * 21 13 12 43 43 H 1.09006 * 109.46317 * 181.75493 * 22 12 11 44 44 H 1.08995 * 109.46401 * 301.72639 * 22 12 11 45 45 H 1.08995 * 109.50437 * 180.87872 * 23 22 12 46 46 H 1.09003 * 109.53151 * 60.77743 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2450 -3.6639 0.0005 11 6 1.4750 -4.9852 -0.0595 12 7 0.6532 -5.0195 -1.2759 13 6 0.0069 -6.3286 -1.4378 14 6 -0.8387 -6.3246 -2.7127 15 6 -1.4744 -7.7050 -2.9060 16 6 -2.3073 -8.0517 -1.6776 17 6 -3.6709 -7.3657 -1.6254 18 8 -4.2010 -8.4555 -2.3934 19 6 -3.1799 -9.2949 -1.8357 20 6 -1.5224 -7.9933 -0.3725 21 6 -0.8863 -6.6071 -0.2275 22 6 -0.3405 -3.9384 -1.2761 23 6 0.3752 -2.5858 -1.2525 24 1 -0.4850 0.8401 -0.0004 25 1 0.6219 -2.5566 0.8889 26 1 2.8428 -3.6321 0.9113 27 1 2.8995 -3.5844 -0.8674 28 1 0.8314 -5.0705 0.8161 29 1 2.1804 -5.8160 -0.0741 30 1 0.7701 -7.1033 -1.5109 31 1 -0.2048 -6.0932 -3.5686 32 1 -1.6226 -5.5721 -2.6268 33 1 -0.6909 -8.4514 -3.0370 34 1 -2.1149 -7.6911 -3.7879 35 1 -3.6964 -6.4117 -2.1522 36 1 -4.0864 -7.3021 -0.6197 37 1 -3.4632 -9.7489 -0.8861 38 1 -2.7785 -10.0184 -2.5453 39 1 -2.1956 -8.1743 0.4654 40 1 -0.7412 -8.7534 -0.3833 41 1 -0.2862 -6.5763 0.6820 42 1 -1.6696 -5.8511 -0.1720 43 1 -0.9539 -4.0090 -2.1744 44 1 -0.9755 -4.0286 -0.3949 45 1 -0.3628 -1.7839 -1.2369 46 1 0.9998 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257908812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:48 Heat of formation + Delta-G solvation = -43.777366 kcal Electronic energy + Delta-G solvation = -23227.306853 eV Core-core repulsion = 20116.311798 eV Total energy + Delta-G solvation = -3110.995055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.40808 -40.31562 -37.50551 -35.16127 -33.14526 -32.10645 -31.29777 -30.29489 -27.60380 -27.21720 -25.51886 -24.27304 -23.75289 -23.22580 -21.37370 -20.05318 -19.20506 -18.44410 -17.31456 -17.09233 -16.82256 -16.59256 -16.40970 -15.59999 -15.16935 -15.06910 -14.80113 -14.66430 -14.43380 -14.19509 -13.78900 -13.62631 -13.27768 -13.06977 -13.00626 -12.85938 -12.67180 -12.53249 -12.24489 -12.16224 -12.03371 -11.81049 -11.64732 -11.54957 -11.23398 -11.07151 -10.92802 -10.76710 -10.60975 -10.57081 -10.34265 -9.01009 -8.07372 -6.20688 1.40718 1.41449 1.51458 2.43988 2.98141 3.04810 3.19195 3.24048 3.67607 3.84845 4.06500 4.17583 4.20776 4.27488 4.35393 4.38029 4.43010 4.45340 4.51298 4.57943 4.59016 4.65181 4.75965 4.81179 4.83910 4.90012 4.97362 4.99189 5.01811 5.08982 5.10896 5.16249 5.19079 5.23524 5.26591 5.28305 5.36727 5.48449 5.50956 5.60529 5.65320 6.02841 6.07116 6.36564 6.42258 6.45364 6.91318 7.47033 8.96935 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.035363 B = 0.003812 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.594911 B = 7342.713487 C = 7671.823877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.045 3.955 10 C -0.101 4.101 11 C 0.067 3.933 12 N -0.536 5.536 13 C 0.088 3.912 14 C -0.108 4.108 15 C -0.082 4.082 16 C -0.118 4.118 17 C 0.030 3.970 18 O -0.398 6.398 19 C 0.038 3.962 20 C -0.092 4.092 21 C -0.149 4.149 22 C 0.070 3.930 23 C -0.096 4.096 24 H 0.259 0.741 25 H -0.014 1.014 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.015 0.985 45 H 0.057 0.943 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.963 -19.379 -2.700 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.061 4.061 12 N -0.260 5.260 13 C -0.020 4.020 14 C -0.146 4.146 15 C -0.120 4.120 16 C -0.118 4.118 17 C -0.047 4.047 18 O -0.317 6.317 19 C -0.039 4.039 20 C -0.130 4.130 21 C -0.188 4.188 22 C -0.058 4.058 23 C -0.134 4.134 24 H 0.068 0.932 25 H 0.005 0.995 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.033 0.967 45 H 0.076 0.924 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.008 -19.206 -3.289 19.894 hybrid contribution -0.247 1.480 0.930 1.765 sum -4.256 -17.727 -2.359 18.382 Atomic orbital electron populations 1.70023 1.07131 1.26963 1.51617 1.25731 0.95667 1.02293 0.94892 0.85652 0.78786 0.79601 0.78194 1.20209 1.20919 1.19334 1.21610 0.92965 0.92390 1.50231 0.93215 1.18640 0.93132 0.92582 0.92954 1.21551 0.97976 0.94343 0.99972 1.22021 0.95889 0.97851 0.90322 1.62183 1.23016 1.03034 1.37736 1.21794 0.95318 0.90479 0.94444 1.21582 0.98479 0.97230 0.97308 1.21109 0.98616 0.96716 0.95531 1.22667 0.95069 0.96508 0.97564 1.23799 0.92182 0.92184 0.96533 1.89849 1.54691 1.24089 1.63068 1.23835 0.85851 0.94316 0.99870 1.21305 0.99680 0.96545 0.95458 1.22177 0.99434 0.97963 0.99191 1.22020 0.93255 0.91534 0.98973 1.21422 0.99067 0.94982 0.97938 0.93160 0.99548 0.93086 0.93237 0.95665 0.89657 0.89098 0.91291 0.92982 0.89525 0.91404 0.90618 0.89641 0.88837 0.88389 0.90800 0.89710 0.92023 0.93431 0.91071 0.96726 0.92432 0.95416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.86 11.37 21.45 0.24 -53.61 16 2 C 0.01 0.70 5.31 84.66 0.45 1.15 16 3 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.17 8.57 25.60 0.22 -29.95 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.33 2.16 -11.46 -0.02 2.30 16 10 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 11 C 0.07 2.26 4.88 86.33 0.42 2.68 16 12 N -0.54 -17.72 4.68 -871.21 -4.08 -21.80 16 13 C 0.09 2.16 2.24 44.90 0.10 2.26 16 14 C -0.11 -2.47 4.75 30.66 0.15 -2.33 16 15 C -0.08 -1.45 5.15 30.46 0.16 -1.30 16 16 C -0.12 -2.00 0.90 -52.76 -0.05 -2.05 16 17 C 0.03 0.60 7.80 64.18 0.50 1.10 16 18 O -0.40 -9.05 12.56 -148.98 -1.87 -10.92 16 19 C 0.04 0.58 7.93 64.17 0.51 1.09 16 20 C -0.09 -1.49 5.18 30.46 0.16 -1.33 16 21 C -0.15 -3.38 4.48 30.65 0.14 -3.24 16 22 C 0.07 2.69 4.67 86.33 0.40 3.10 16 23 C -0.10 -4.65 5.12 30.65 0.16 -4.50 16 24 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 25 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.03 0.87 6.58 -2.38 -0.02 0.85 16 29 H 0.09 2.41 8.12 -2.39 -0.02 2.39 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.34 5.90 -2.39 -0.01 1.32 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.27 7.98 -2.39 -0.02 1.25 16 35 H 0.08 1.67 7.69 -2.38 -0.02 1.65 16 36 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 37 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 38 H 0.10 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.07 1.08 8.05 -2.39 -0.02 1.06 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.48 6.42 -2.38 -0.02 1.46 16 42 H 0.05 1.26 6.73 -2.39 -0.02 1.25 16 43 H 0.07 2.55 5.94 -2.38 -0.01 2.53 16 44 H 0.01 0.59 6.75 -2.39 -0.02 0.57 16 45 H 0.06 3.16 6.17 -2.39 -0.01 3.15 16 46 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -62.72 335.69 0.70 -62.02 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.93 Total: 12.96 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 3.45 Total: -35.05 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -3.83 Total: -75.41 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.87 Total: -10.92 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -62.72 0.70 -62.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257908812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.238 kcal (2) G-P(sol) polarization free energy of solvation -62.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds