Wall clock time and date at job start Tue Mar 31 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99548 * 2 1 4 4 H 1.48497 * 109.46896 * 274.99313 * 3 2 1 5 5 H 1.48497 * 109.47312 * 34.99525 * 3 2 1 6 6 H 1.48501 * 109.46934 * 154.99968 * 3 2 1 7 7 C 1.37875 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99971 * 173.27084 * 7 2 1 9 9 C 1.50703 * 119.99822 * 353.26894 * 7 2 1 10 10 C 1.53004 * 115.54842 * 183.05415 * 9 7 2 11 11 N 1.46903 * 109.46971 * 34.42105 * 10 9 7 12 12 C 1.46845 * 110.99964 * 70.75366 * 11 10 9 13 13 C 1.53043 * 109.52409 * 185.84047 * 12 11 10 14 14 C 1.53120 * 109.27596 * 300.82015 * 13 12 11 15 15 C 1.53120 * 109.15055 * 57.65861 * 14 13 12 16 16 C 1.46845 * 111.00232 * 194.96353 * 11 10 9 17 17 H 1.08994 * 109.45944 * 294.16854 * 16 11 10 18 18 C 1.53005 * 109.45921 * 54.14349 * 16 11 10 19 19 H 1.08996 * 110.33460 * 292.02323 * 18 16 11 20 20 C 1.54473 * 110.37312 * 54.27854 * 18 16 11 21 21 C 1.54505 * 104.06594 * 142.80666 * 20 18 16 22 22 C 1.54479 * 104.06019 * 359.97438 * 21 20 18 23 23 O 1.44423 * 104.90204 * 335.96553 * 22 21 20 24 24 C 1.52996 * 117.50355 * 328.72896 * 9 7 2 25 25 C 1.53002 * 117.49803 * 37.39228 * 9 7 2 26 26 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47133 * 274.42302 * 10 9 7 28 28 H 1.08996 * 109.46875 * 154.41979 * 10 9 7 29 29 H 1.09005 * 109.46423 * 305.85749 * 12 11 10 30 30 H 1.08994 * 109.46417 * 65.83349 * 12 11 10 31 31 H 1.08993 * 109.50087 * 60.76205 * 13 12 11 32 32 H 1.08998 * 109.50243 * 180.84413 * 13 12 11 33 33 H 1.09000 * 109.52269 * 177.55979 * 14 13 12 34 34 H 1.08995 * 109.52565 * 297.68534 * 14 13 12 35 35 H 1.09006 * 109.49458 * 182.38757 * 15 14 13 36 36 H 1.09005 * 109.50836 * 62.27767 * 15 14 13 37 37 H 1.09006 * 110.51200 * 24.16088 * 20 18 16 38 38 H 1.09000 * 110.51175 * 261.45209 * 20 18 16 39 39 H 1.09006 * 110.51527 * 241.35301 * 21 20 18 40 40 H 1.08999 * 110.63016 * 118.69918 * 21 20 18 41 41 H 1.09000 * 110.37153 * 94.85638 * 22 21 20 42 42 H 1.09003 * 110.36997 * 217.07464 * 22 21 20 43 43 H 1.08994 * 117.49820 * 215.00480 * 24 9 7 44 44 H 1.09003 * 117.49404 * 0.02562 * 24 9 7 45 45 H 1.09005 * 117.49856 * 359.96910 * 25 9 7 46 46 H 1.08992 * 117.49764 * 144.96893 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5955 1.4122 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1972 -0.1091 9 6 1.2589 -2.4946 0.1541 10 6 2.1295 -3.7513 0.2139 11 7 3.3889 -3.4422 0.9042 12 6 3.1631 -3.2251 2.3388 13 6 4.4654 -2.7644 2.9976 14 6 5.5433 -3.8314 2.7872 15 6 5.7246 -4.0730 1.2861 16 6 4.3860 -4.4960 0.6771 17 1 4.0499 -5.4209 1.1455 18 6 4.5580 -4.7194 -0.8268 19 1 3.6537 -5.1559 -1.2507 20 6 4.8945 -3.3875 -1.5333 21 6 5.9064 -3.7892 -2.6296 22 6 6.0621 -5.3162 -2.4553 23 8 5.6993 -5.5721 -1.0810 24 6 -0.0203 -2.4808 0.9933 25 6 -0.1049 -2.6119 -0.5294 26 1 -0.4850 0.8400 0.0004 27 1 2.3446 -4.0929 -0.7986 28 1 1.6003 -4.5344 0.7569 29 1 2.3974 -2.4613 2.4746 30 1 2.8329 -4.1562 2.7994 31 1 4.7890 -1.8263 2.5470 32 1 4.3011 -2.6179 4.0652 33 1 6.4843 -3.4883 3.2173 34 1 5.2378 -4.7585 3.2722 35 1 6.4606 -4.8620 1.1309 36 1 6.0680 -3.1553 0.8086 37 1 5.3488 -2.6874 -0.8322 38 1 3.9991 -2.9553 -1.9799 39 1 6.8611 -3.2877 -2.4706 40 1 5.5135 -3.5555 -3.6191 41 1 5.3896 -5.8457 -3.1302 42 1 7.0943 -5.6156 -2.6374 43 1 -0.2415 -3.3669 1.5881 44 1 -0.3227 -1.5308 1.4341 45 1 -0.4630 -1.7482 -1.0898 46 1 -0.3817 -3.5842 -0.9368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308159835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:54 Heat of formation + Delta-G solvation = -12.966651 kcal Electronic energy + Delta-G solvation = -24070.914478 eV Core-core repulsion = 20961.255476 eV Total energy + Delta-G solvation = -3109.659002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.87554 -37.95163 -36.20480 -32.90584 -31.81093 -31.40372 -31.12093 -27.53787 -26.34442 -25.12573 -23.63571 -22.35610 -21.36001 -20.76694 -20.40070 -18.82154 -18.75166 -16.24074 -16.15798 -15.49509 -15.27871 -14.92243 -14.54366 -14.22009 -13.83442 -13.57260 -13.36264 -13.23651 -12.86149 -12.51641 -12.20228 -11.74955 -11.67103 -11.35552 -11.20075 -11.04965 -11.02121 -10.87569 -10.57144 -10.55430 -10.39365 -10.15949 -10.09441 -9.92924 -9.90417 -9.85860 -9.41453 -9.33654 -8.68492 -8.21536 -7.93721 -7.45820 -5.84575 -3.84362 3.33830 3.42256 3.46932 3.92990 4.49610 4.69561 4.86629 4.98895 5.14464 5.16634 5.21054 5.28218 5.33297 5.43108 5.50572 5.71725 5.76697 5.83460 5.87495 5.92155 5.96351 6.04409 6.11959 6.14039 6.19676 6.28853 6.32593 6.38860 6.44407 6.46287 6.50717 6.57100 6.72831 6.76650 6.79783 6.86408 7.06278 7.12855 7.27553 7.33856 7.73767 7.86388 7.98782 8.16857 8.28960 8.69635 9.16660 9.69243 11.12633 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.006751 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.332522 B = 4146.586931 C = 4407.385559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.050 3.950 3 Si 0.889 3.111 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.441 4.441 8 H 0.075 0.925 9 C 0.028 3.972 10 C 0.096 3.904 11 N -0.501 5.501 12 C 0.067 3.933 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.103 4.103 16 C 0.091 3.909 17 H 0.032 0.968 18 C 0.081 3.919 19 H 0.066 0.934 20 C -0.133 4.133 21 C -0.159 4.159 22 C 0.046 3.954 23 O -0.376 6.376 24 C -0.195 4.195 25 C -0.191 4.191 26 H 0.254 0.746 27 H 0.062 0.938 28 H 0.010 0.990 29 H 0.094 0.906 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.084 0.916 43 H 0.036 0.964 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.078 -8.126 -0.189 12.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.149 4.149 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.479 4.479 8 H 0.093 0.907 9 C 0.027 3.973 10 C -0.031 4.031 11 N -0.226 5.226 12 C -0.060 4.060 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.141 4.141 16 C -0.018 4.018 17 H 0.050 0.950 18 C 0.024 3.976 19 H 0.084 0.916 20 C -0.171 4.171 21 C -0.196 4.196 22 C -0.031 4.031 23 O -0.295 6.295 24 C -0.233 4.233 25 C -0.230 4.230 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.028 0.972 29 H 0.113 0.887 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.055 0.945 44 H 0.124 0.876 45 H 0.130 0.870 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.239 -7.707 -0.230 12.818 hybrid contribution -0.269 0.224 0.153 0.382 sum 9.970 -7.484 -0.078 12.467 Atomic orbital electron populations 1.70039 1.05773 1.25531 1.51292 1.25047 0.94807 0.99053 0.96015 0.86622 0.80095 0.83875 0.77648 1.21228 1.21665 1.19775 1.20630 0.93865 0.87836 1.45545 0.90674 1.18959 0.85243 0.92902 1.00213 1.21732 0.88700 0.96118 0.96593 1.61760 1.09228 1.40943 1.10635 1.21989 0.97704 0.99574 0.86762 1.21589 0.95228 0.99246 0.99343 1.21591 0.98758 0.98846 0.96515 1.21514 0.95999 1.01731 0.94814 1.21462 0.94174 0.93249 0.92875 0.94980 1.23075 0.88671 0.90132 0.95755 0.91626 1.22833 0.99699 0.97578 0.96992 1.22989 1.00509 0.95985 1.00166 1.23321 1.00269 0.95289 0.84181 1.89112 1.48578 1.64104 1.27660 1.22851 1.07348 0.99898 0.93175 1.22881 1.05504 0.98881 0.95703 0.93536 0.91959 0.97151 0.88738 0.96736 0.90891 0.92435 0.92532 0.92960 0.91639 0.91088 0.89541 0.89527 0.91243 0.90990 0.92839 0.89771 0.94521 0.87600 0.87015 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.34 8.64 55.43 0.48 -23.86 16 2 C 0.05 1.33 5.25 -17.82 -0.09 1.24 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.44 -11.30 8.33 -34.44 -0.29 -11.59 16 8 H 0.08 1.93 7.29 -52.49 -0.38 1.55 16 9 C 0.03 0.65 1.58 -155.66 -0.25 0.41 16 10 C 0.10 1.93 4.80 -3.82 -0.02 1.91 16 11 N -0.50 -9.19 2.83 -226.69 -0.64 -9.83 16 12 C 0.07 1.21 5.20 -3.83 -0.02 1.19 16 13 C -0.12 -1.80 6.09 -26.65 -0.16 -1.96 16 14 C -0.12 -1.65 6.00 -26.61 -0.16 -1.81 16 15 C -0.10 -1.52 4.93 -26.65 -0.13 -1.65 16 16 C 0.09 1.48 1.94 -67.73 -0.13 1.35 16 17 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 18 C 0.08 1.27 2.48 -25.96 -0.06 1.20 16 19 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 20 C -0.13 -2.06 5.73 -25.17 -0.14 -2.20 16 21 C -0.16 -1.97 7.09 -25.17 -0.18 -2.15 16 22 C 0.05 0.56 7.62 37.93 0.29 0.85 16 23 O -0.38 -5.64 10.35 -35.23 -0.36 -6.01 16 24 C -0.19 -4.75 9.13 -26.69 -0.24 -5.00 16 25 C -0.19 -4.69 9.39 -26.69 -0.25 -4.94 16 26 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.06 1.22 5.32 -51.93 -0.28 0.94 16 28 H 0.01 0.21 7.83 -51.93 -0.41 -0.20 16 29 H 0.09 1.96 6.95 -51.93 -0.36 1.59 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.94 7.52 -51.93 -0.39 0.55 16 36 H 0.07 1.10 6.41 -51.93 -0.33 0.77 16 37 H 0.09 1.43 6.16 -51.93 -0.32 1.11 16 38 H 0.09 1.49 7.95 -51.93 -0.41 1.08 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.11 2.86 6.29 -51.93 -0.33 2.54 16 45 H 0.11 3.04 6.29 -51.93 -0.33 2.71 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 338.75 15.07 5.10 5.10 Total: -1.00 -26.62 338.75 -10.37 -36.99 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.08 Total: 4.84 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -1.84 Total: -23.15 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: -0.16 Total: -33.69 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.36 Total: -6.01 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.62 -10.37 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308159835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.020 kcal (2) G-P(sol) polarization free energy of solvation -26.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds