Wall clock time and date at job start Tue Mar 31 2020 01:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86806 * 119.99548 * 2 1 4 4 H 1.48497 * 109.46896 * 274.99313 * 3 2 1 5 5 H 1.48497 * 109.47312 * 34.99525 * 3 2 1 6 6 H 1.48501 * 109.46934 * 154.99968 * 3 2 1 7 7 C 1.37875 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99971 * 173.27084 * 7 2 1 9 9 C 1.50703 * 119.99822 * 353.26894 * 7 2 1 10 10 C 1.53004 * 115.54842 * 183.05415 * 9 7 2 11 11 N 1.46903 * 109.46971 * 34.42105 * 10 9 7 12 12 C 1.46845 * 110.99964 * 70.75366 * 11 10 9 13 13 C 1.53043 * 109.52409 * 185.84047 * 12 11 10 14 14 C 1.53120 * 109.27596 * 300.82015 * 13 12 11 15 15 C 1.53120 * 109.15055 * 57.65861 * 14 13 12 16 16 C 1.46845 * 111.00232 * 194.96353 * 11 10 9 17 17 H 1.08994 * 109.45944 * 294.16854 * 16 11 10 18 18 C 1.53005 * 109.45921 * 54.14349 * 16 11 10 19 19 H 1.08996 * 110.33460 * 292.02323 * 18 16 11 20 20 C 1.54473 * 110.37312 * 54.27854 * 18 16 11 21 21 C 1.54505 * 104.06594 * 142.80666 * 20 18 16 22 22 C 1.54479 * 104.06019 * 359.97438 * 21 20 18 23 23 O 1.44423 * 104.90204 * 335.96553 * 22 21 20 24 24 C 1.52996 * 117.50355 * 328.72896 * 9 7 2 25 25 C 1.53002 * 117.49803 * 37.39228 * 9 7 2 26 26 H 0.97000 * 120.00225 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47133 * 274.42302 * 10 9 7 28 28 H 1.08996 * 109.46875 * 154.41979 * 10 9 7 29 29 H 1.09005 * 109.46423 * 305.85749 * 12 11 10 30 30 H 1.08994 * 109.46417 * 65.83349 * 12 11 10 31 31 H 1.08993 * 109.50087 * 60.76205 * 13 12 11 32 32 H 1.08998 * 109.50243 * 180.84413 * 13 12 11 33 33 H 1.09000 * 109.52269 * 177.55979 * 14 13 12 34 34 H 1.08995 * 109.52565 * 297.68534 * 14 13 12 35 35 H 1.09006 * 109.49458 * 182.38757 * 15 14 13 36 36 H 1.09005 * 109.50836 * 62.27767 * 15 14 13 37 37 H 1.09006 * 110.51200 * 24.16088 * 20 18 16 38 38 H 1.09000 * 110.51175 * 261.45209 * 20 18 16 39 39 H 1.09006 * 110.51527 * 241.35301 * 21 20 18 40 40 H 1.08999 * 110.63016 * 118.69918 * 21 20 18 41 41 H 1.09000 * 110.37153 * 94.85638 * 22 21 20 42 42 H 1.09003 * 110.36997 * 217.07464 * 22 21 20 43 43 H 1.08994 * 117.49820 * 215.00480 * 24 9 7 44 44 H 1.09003 * 117.49404 * 0.02562 * 24 9 7 45 45 H 1.09005 * 117.49856 * 359.96910 * 25 9 7 46 46 H 1.08992 * 117.49764 * 144.96893 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.3910 2.1074 -1.3948 5 1 1.5033 2.6200 0.8029 6 1 3.5955 1.4122 0.5917 7 6 2.0046 -1.1940 0.0005 8 1 3.0790 -1.1972 -0.1091 9 6 1.2589 -2.4946 0.1541 10 6 2.1295 -3.7513 0.2139 11 7 3.3889 -3.4422 0.9042 12 6 3.1631 -3.2251 2.3388 13 6 4.4654 -2.7644 2.9976 14 6 5.5433 -3.8314 2.7872 15 6 5.7246 -4.0730 1.2861 16 6 4.3860 -4.4960 0.6771 17 1 4.0499 -5.4209 1.1455 18 6 4.5580 -4.7194 -0.8268 19 1 3.6537 -5.1559 -1.2507 20 6 4.8945 -3.3875 -1.5333 21 6 5.9064 -3.7892 -2.6296 22 6 6.0621 -5.3162 -2.4553 23 8 5.6993 -5.5721 -1.0810 24 6 -0.0203 -2.4808 0.9933 25 6 -0.1049 -2.6119 -0.5294 26 1 -0.4850 0.8400 0.0004 27 1 2.3446 -4.0929 -0.7986 28 1 1.6003 -4.5344 0.7569 29 1 2.3974 -2.4613 2.4746 30 1 2.8329 -4.1562 2.7994 31 1 4.7890 -1.8263 2.5470 32 1 4.3011 -2.6179 4.0652 33 1 6.4843 -3.4883 3.2173 34 1 5.2378 -4.7585 3.2722 35 1 6.4606 -4.8620 1.1309 36 1 6.0680 -3.1553 0.8086 37 1 5.3488 -2.6874 -0.8322 38 1 3.9991 -2.9553 -1.9799 39 1 6.8611 -3.2877 -2.4706 40 1 5.5135 -3.5555 -3.6191 41 1 5.3896 -5.8457 -3.1302 42 1 7.0943 -5.6156 -2.6374 43 1 -0.2415 -3.3669 1.5881 44 1 -0.3227 -1.5308 1.4341 45 1 -0.4630 -1.7482 -1.0898 46 1 -0.3817 -3.5842 -0.9368 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308159835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:53 Heat of formation + Delta-G solvation = -25.552750 kcal Electronic energy + Delta-G solvation = -24071.460252 eV Core-core repulsion = 20961.255476 eV Total energy + Delta-G solvation = -3110.204776 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13569 -39.30165 -37.94366 -34.34759 -33.35956 -32.85260 -32.45931 -28.73193 -28.06193 -26.95232 -24.82561 -23.77650 -22.65605 -22.41642 -21.75069 -20.69993 -20.04450 -17.95244 -17.33766 -16.95808 -16.77607 -16.44925 -15.94786 -15.56097 -15.26046 -15.10800 -14.74117 -14.54399 -14.21775 -13.98363 -13.71827 -13.28797 -12.99756 -12.91053 -12.77139 -12.50757 -12.40704 -12.40449 -12.14262 -12.06214 -11.89881 -11.76372 -11.64034 -11.40452 -11.28957 -11.09561 -11.07479 -10.75461 -10.47515 -10.15361 -9.91499 -8.92802 -7.88701 -5.92882 1.43622 1.47699 1.57259 2.51731 2.71510 3.14533 3.39207 3.74977 3.80927 3.95345 4.03810 4.10865 4.11302 4.17989 4.24143 4.38624 4.47532 4.52675 4.56169 4.64063 4.68321 4.77235 4.78836 4.85138 4.89366 4.92845 5.02377 5.06834 5.11473 5.13124 5.17257 5.20351 5.25019 5.29407 5.32996 5.42242 5.45784 5.50199 5.62374 5.74366 5.94941 6.06038 6.23695 6.37455 6.50936 6.70998 7.12004 7.62625 9.06665 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.006751 C = 0.006351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.332522 B = 4146.586931 C = 4407.385559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.005 3.995 3 Si 0.944 3.056 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.442 4.442 8 H 0.072 0.928 9 C 0.028 3.972 10 C 0.106 3.894 11 N -0.508 5.508 12 C 0.068 3.932 13 C -0.111 4.111 14 C -0.113 4.113 15 C -0.097 4.097 16 C 0.092 3.908 17 H 0.030 0.970 18 C 0.085 3.915 19 H 0.058 0.942 20 C -0.132 4.132 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.385 6.385 24 C -0.193 4.193 25 C -0.195 4.195 26 H 0.250 0.750 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.061 0.939 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.285 -9.254 -0.159 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.480 4.480 8 H 0.090 0.910 9 C 0.027 3.973 10 C -0.022 4.022 11 N -0.234 5.234 12 C -0.059 4.059 13 C -0.149 4.149 14 C -0.151 4.151 15 C -0.134 4.134 16 C -0.017 4.017 17 H 0.048 0.952 18 C 0.027 3.973 19 H 0.076 0.924 20 C -0.170 4.170 21 C -0.190 4.190 22 C -0.033 4.033 23 O -0.304 6.304 24 C -0.231 4.231 25 C -0.233 4.233 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.462 -8.841 -0.203 15.281 hybrid contribution -0.968 0.556 0.121 1.123 sum 11.494 -8.286 -0.082 14.169 Atomic orbital electron populations 1.70192 1.06808 1.25699 1.52327 1.25673 0.95465 1.01794 0.96288 0.85749 0.79115 0.80581 0.77368 1.21146 1.22077 1.19181 1.20809 0.93761 0.88777 1.44662 0.91014 1.19084 0.85295 0.93880 0.99055 1.21539 0.89127 0.94190 0.97342 1.61691 1.08686 1.42166 1.10809 1.21933 0.98306 0.98838 0.86869 1.21547 0.94411 0.99026 0.99926 1.21559 0.99017 0.98575 0.95904 1.21469 0.95059 1.01546 0.95370 1.21503 0.94184 0.92344 0.93628 0.95209 1.22930 0.88857 0.90244 0.95226 0.92399 1.22723 0.99435 0.97178 0.97646 1.22968 1.00074 0.96464 0.99523 1.23537 1.01969 0.94908 0.82901 1.89093 1.48036 1.63911 1.29399 1.22684 1.08151 0.99127 0.93129 1.22767 1.06391 0.98738 0.95431 0.94017 0.91390 0.96964 0.92087 0.96067 0.92511 0.90709 0.90416 0.92059 0.90656 0.91930 0.90915 0.91942 0.90151 0.89938 0.91927 0.87306 0.92828 0.90472 0.89844 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.28 8.64 21.45 0.19 -51.10 16 2 C 0.00 0.26 5.25 84.65 0.44 0.70 16 3 Si 0.94 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.44 -22.98 8.33 25.60 0.21 -22.77 16 8 H 0.07 3.73 7.29 -2.91 -0.02 3.71 16 9 C 0.03 1.32 1.58 -52.93 -0.08 1.24 16 10 C 0.11 4.22 4.80 86.30 0.41 4.64 16 11 N -0.51 -18.41 2.83 -871.12 -2.47 -20.88 16 12 C 0.07 2.41 5.20 86.33 0.45 2.86 16 13 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 14 C -0.11 -2.80 6.00 30.67 0.18 -2.62 16 15 C -0.10 -2.65 4.93 30.64 0.15 -2.50 16 16 C 0.09 2.86 1.94 44.94 0.09 2.94 16 17 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 18 C 0.09 2.54 2.48 31.10 0.08 2.62 16 19 H 0.06 1.81 6.54 -2.39 -0.02 1.80 16 20 C -0.13 -3.96 5.73 31.61 0.18 -3.78 16 21 C -0.15 -3.46 7.09 31.61 0.22 -3.24 16 22 C 0.04 0.92 7.62 72.48 0.55 1.47 16 23 O -0.39 -10.65 10.35 -148.98 -1.54 -12.19 16 24 C -0.19 -9.56 9.13 30.62 0.28 -9.28 16 25 C -0.19 -9.67 9.39 30.62 0.29 -9.38 16 26 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 27 H 0.07 2.63 5.32 -2.39 -0.01 2.62 16 28 H 0.01 0.48 7.83 -2.39 -0.02 0.47 16 29 H 0.06 2.56 6.95 -2.38 -0.02 2.54 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 1.94 7.52 -2.38 -0.02 1.92 16 36 H 0.06 1.83 6.41 -2.38 -0.02 1.81 16 37 H 0.07 2.37 6.16 -2.38 -0.01 2.36 16 38 H 0.06 2.16 7.95 -2.39 -0.02 2.14 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.05 2.43 8.05 -2.39 -0.02 2.41 16 44 H 0.08 4.30 6.29 -2.39 -0.01 4.29 16 45 H 0.08 4.66 6.29 -2.38 -0.02 4.64 16 46 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -57.18 338.75 2.79 -54.39 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.94 Total: 24.33 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.65 Total: -40.17 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -2.28 Total: -71.98 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -1.54 Total: -12.19 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -57.18 2.79 -54.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308159835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.838 kcal (2) G-P(sol) polarization free energy of solvation -57.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds