Wall clock time and date at job start Tue Mar 31 2020 01:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99682 * 2 1 4 4 H 1.48499 * 109.47136 * 270.00114 * 3 2 1 5 5 H 1.48491 * 109.47340 * 30.00021 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00403 * 3 2 1 7 7 C 1.37875 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47000 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47208 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.27843 * 12 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11 16 16 C 1.52999 * 109.46992 * 179.97438 * 15 14 12 17 17 H 1.09003 * 115.55186 * 330.71898 * 16 15 14 18 18 C 1.53001 * 117.50252 * 116.39062 * 16 15 14 19 19 C 1.53000 * 60.00029 * 107.49124 * 18 16 15 20 20 H 1.09000 * 117.49887 * 107.49705 * 19 18 16 21 21 C 1.53007 * 117.50198 * 252.51317 * 19 18 16 22 22 C 1.54263 * 110.03071 * 246.53488 * 21 19 18 23 23 C 1.54971 * 104.15806 * 217.13293 * 22 21 19 24 24 C 1.54895 * 102.77194 * 37.88599 * 23 22 21 25 25 C 1.53874 * 110.03317 * 129.31228 * 21 19 18 26 26 H 0.97000 * 120.00572 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.46839 * 59.99740 * 9 7 2 28 28 H 1.09001 * 109.46310 * 299.99503 * 9 7 2 29 29 H 1.09000 * 109.47849 * 59.99708 * 10 9 7 30 30 H 1.08998 * 109.47443 * 299.99576 * 10 9 7 31 31 H 1.09009 * 109.46730 * 59.99606 * 11 10 9 32 32 H 1.08998 * 109.46846 * 300.00150 * 11 10 9 33 33 H 0.97000 * 119.99894 * 359.71837 * 14 12 11 34 34 H 1.08995 * 109.47421 * 299.99467 * 15 14 12 35 35 H 1.09001 * 109.47621 * 60.00103 * 15 14 12 36 36 H 1.08996 * 117.50030 * 214.98256 * 18 16 15 37 37 H 1.09003 * 117.49619 * 0.02562 * 18 16 15 38 38 H 1.09001 * 110.01300 * 7.92141 * 21 19 18 39 39 H 1.08998 * 110.48513 * 335.77655 * 22 21 19 40 40 H 1.08997 * 110.49089 * 98.42501 * 22 21 19 41 41 H 1.08994 * 110.71844 * 279.57605 * 23 22 21 42 42 H 1.08994 * 110.76459 * 156.21477 * 23 22 21 43 43 H 1.09003 * 110.48421 * 203.40143 * 24 23 22 44 44 H 1.09002 * 110.48412 * 80.76564 * 24 23 22 45 45 H 1.08999 * 110.03181 * 238.57012 * 25 21 19 46 46 H 1.09001 * 110.02726 * 359.95161 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 6 1.4805 -4.9871 -0.0020 12 6 2.4598 -6.1325 -0.0024 13 8 3.6522 -5.9108 -0.0027 14 7 2.0106 -7.4032 -0.0086 15 6 2.9627 -8.5166 -0.0150 16 6 2.1977 -9.8416 -0.0206 17 1 1.2204 -9.8223 0.4616 18 6 2.3656 -10.7492 -1.2408 19 6 3.0155 -11.1299 0.0909 20 1 2.5763 -11.9585 0.6466 21 6 4.5357 -10.9946 0.1994 22 6 5.1804 -12.3874 0.3550 23 6 6.3527 -12.1544 1.3415 24 6 5.7610 -11.1290 2.3404 25 6 4.9049 -10.1946 1.4609 26 1 -0.4851 0.8400 0.0004 27 1 0.6248 -2.5563 -0.8919 28 1 0.6242 -2.5575 0.8881 29 1 2.8715 -3.6047 0.8890 30 1 2.8727 -3.6039 -0.8909 31 1 0.8541 -5.0447 -0.8923 32 1 0.8534 -5.0450 0.8877 33 1 1.0569 -7.5804 -0.0086 34 1 3.5886 -8.4543 -0.9052 35 1 3.5900 -8.4634 0.8748 36 1 1.4988 -11.3271 -1.5613 37 1 3.0213 -10.4024 -2.0395 38 1 4.9302 -10.4975 -0.6868 39 1 4.4645 -13.0945 0.7739 40 1 5.5537 -12.7444 -0.6048 41 1 7.2152 -11.7353 0.8233 42 1 6.6190 -13.0804 1.8508 43 1 6.5582 -10.5687 2.8289 44 1 5.1388 -11.6326 3.0802 45 1 5.4794 -9.3097 1.1870 46 1 4.0011 -9.9021 1.9953 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340997318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:16:45 Heat of formation + Delta-G solvation = -55.708728 kcal Electronic energy + Delta-G solvation = -21202.376950 eV Core-core repulsion = 18090.864513 eV Total energy + Delta-G solvation = -3111.512437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.99145 -39.03943 -36.65517 -34.24945 -33.96065 -31.98771 -29.30039 -28.91796 -28.32335 -26.48719 -23.58930 -22.31692 -21.31163 -21.00015 -20.51807 -19.85491 -19.20707 -16.79504 -16.51981 -16.04443 -15.95097 -15.55053 -14.99096 -14.84556 -14.40293 -14.04893 -13.86503 -13.58802 -13.25398 -12.73963 -12.55978 -12.23336 -12.05390 -11.81884 -11.64703 -11.45462 -11.35546 -11.30789 -11.17850 -10.96759 -10.77974 -10.65537 -10.57310 -10.50967 -10.23758 -10.16105 -9.63727 -9.61586 -9.22339 -8.97798 -8.88394 -8.29506 -5.95206 -3.96426 2.98811 3.20591 3.36571 3.42205 3.47136 3.54596 4.17048 4.29269 4.32699 4.51481 4.60883 4.65339 4.73430 4.97897 5.12033 5.17745 5.19048 5.25283 5.31799 5.40795 5.41664 5.43496 5.50540 5.53258 5.61724 5.65953 5.68056 5.77264 5.78348 5.81551 5.89057 5.96483 5.99190 6.08038 6.14645 6.31096 6.56346 6.77162 6.97679 7.20328 7.67024 7.74463 7.87270 8.05801 8.49646 8.52574 9.10727 9.67346 11.16323 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.033354 B = 0.002448 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.286065 B =11436.261276 C =12015.948979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.540 6.540 14 N -0.739 5.739 15 C 0.143 3.857 16 C -0.164 4.164 17 H 0.109 0.891 18 C -0.173 4.173 19 C -0.131 4.131 20 H 0.106 0.894 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.259 0.741 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -28.311 1.202 28.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.299 3.701 13 O -0.416 6.416 14 N -0.392 5.392 15 C 0.020 3.980 16 C -0.183 4.183 17 H 0.127 0.873 18 C -0.210 4.210 19 C -0.150 4.150 20 H 0.124 0.876 21 C -0.083 4.083 22 C -0.153 4.153 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.161 4.161 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.233 0.767 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.979 -28.016 1.202 28.672 hybrid contribution -0.230 0.784 -0.062 0.819 sum 5.749 -27.232 1.139 27.855 Atomic orbital electron populations 1.69962 1.06028 1.26505 1.51290 1.25024 0.94863 0.99248 0.95437 0.86590 0.79897 0.83427 0.78088 1.20689 1.21279 1.19844 1.21281 0.93193 0.91031 1.50025 0.92586 1.19136 0.93987 0.91488 0.97105 1.21438 0.98614 0.91568 1.01655 1.21842 0.98158 0.94154 1.03693 1.21255 0.90382 0.83731 0.74715 1.90671 1.17371 1.84776 1.48768 1.46145 1.10024 1.05786 1.77279 1.21051 0.91369 0.83034 1.02558 1.22541 1.00936 0.91307 1.03479 0.87269 1.23224 1.03115 1.03124 0.91535 1.22522 0.94122 0.97682 1.00642 0.87588 1.21397 0.92089 0.96171 0.98637 1.22424 0.97275 0.96361 0.99290 1.22526 0.97896 0.98954 0.97071 1.22373 0.99058 0.97155 0.97712 1.22352 0.99964 0.98214 0.95566 0.93095 0.96621 0.96610 0.92732 0.92749 0.89421 0.89417 0.76737 0.91832 0.90433 0.88724 0.88557 0.90812 0.91517 0.91778 0.91534 0.91772 0.91752 0.91792 0.91389 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.51 8.44 7.83 -10.98 -0.09 8.36 16 13 O -0.54 -11.09 15.98 5.55 0.09 -11.00 16 14 N -0.74 -8.95 5.56 -60.30 -0.33 -9.29 16 15 C 0.14 1.57 4.87 -4.04 -0.02 1.55 16 16 C -0.16 -1.32 5.54 -90.62 -0.50 -1.82 16 17 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 18 C -0.17 -1.26 9.83 -26.73 -0.26 -1.52 16 19 C -0.13 -0.94 4.99 -90.62 -0.45 -1.39 16 20 H 0.11 0.69 7.81 -51.93 -0.41 0.28 16 21 C -0.06 -0.49 2.54 -89.50 -0.23 -0.72 16 22 C -0.12 -0.77 6.37 -25.03 -0.16 -0.93 16 23 C -0.13 -0.85 6.91 -24.69 -0.17 -1.02 16 24 C -0.13 -0.93 6.83 -25.07 -0.17 -1.10 16 25 C -0.12 -1.05 4.54 -25.62 -0.12 -1.16 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.09 1.35 8.14 -51.92 -0.42 0.92 16 32 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.40 3.69 8.40 -40.82 -0.34 3.35 16 34 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 35 H 0.08 0.92 5.10 -51.93 -0.26 0.66 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.75 7.95 -51.93 -0.41 0.33 16 38 H 0.07 0.62 7.93 -51.93 -0.41 0.21 16 39 H 0.07 0.41 7.64 -51.93 -0.40 0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 46 H 0.07 0.63 6.45 -51.93 -0.34 0.29 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -33.06 364.33 -10.45 -43.51 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -8.41 Total: -1.27 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.99 Total: -18.05 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.40 Total: -35.91 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.06 -10.45 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340997318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.198 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds