Wall clock time and date at job start Tue Mar 31 2020 01:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48496 * 109.47480 * 269.99996 * 3 2 1 5 5 H 1.48497 * 109.47064 * 30.00284 * 3 2 1 6 6 H 1.48504 * 109.46703 * 150.00172 * 3 2 1 7 7 C 1.37878 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99734 * 168.93034 * 7 2 1 9 9 C 1.50700 * 120.00134 * 348.92143 * 7 2 1 10 10 C 1.52992 * 115.54938 * 324.38247 * 9 7 2 11 11 N 1.46897 * 109.47280 * 305.16061 * 10 9 7 12 12 C 1.46902 * 111.00225 * 185.45570 * 11 10 9 13 13 H 1.09004 * 109.54100 * 309.80917 * 12 11 10 14 14 C 1.53256 * 109.54327 * 70.06978 * 12 11 10 15 15 C 1.53099 * 109.11080 * 176.24495 * 14 12 11 16 16 O 1.42899 * 109.51048 * 302.05312 * 15 14 12 17 17 C 1.42984 * 114.05512 * 61.46211 * 16 15 14 18 18 C 1.52707 * 109.43268 * 299.52744 * 17 16 15 19 19 C 1.53566 * 110.03752 * 295.21273 * 18 17 16 20 20 C 1.54347 * 106.47233 * 240.81375 * 19 18 17 21 21 C 1.54921 * 104.32086 * 336.35470 * 20 19 18 22 22 C 1.53940 * 109.87902 * 177.72699 * 18 17 16 23 23 C 1.53004 * 117.49617 * 110.05138 * 9 7 2 24 24 C 1.52995 * 117.49784 * 178.71010 * 9 7 2 25 25 H 0.96997 * 120.00113 * 5.05630 * 1 2 3 26 26 H 1.09004 * 109.47228 * 185.16091 * 10 9 7 27 27 H 1.09003 * 109.47701 * 65.16481 * 10 9 7 28 28 H 1.00902 * 110.99763 * 61.50413 * 11 10 9 29 29 H 1.09001 * 109.53455 * 296.14192 * 14 12 11 30 30 H 1.09005 * 109.53039 * 56.28386 * 14 12 11 31 31 H 1.08993 * 109.45982 * 62.07064 * 15 14 12 32 32 H 1.08999 * 109.46223 * 182.05537 * 15 14 12 33 33 H 1.08997 * 109.47470 * 179.53383 * 17 16 15 34 34 H 1.09010 * 109.47827 * 59.51695 * 17 16 15 35 35 H 1.09003 * 110.05867 * 121.56072 * 19 18 17 36 36 H 1.08994 * 110.10331 * 0.09208 * 19 18 17 37 37 H 1.08993 * 110.48525 * 95.10259 * 20 19 18 38 38 H 1.09007 * 110.48654 * 217.60886 * 20 19 18 39 39 H 1.08997 * 110.74978 * 156.15890 * 21 20 19 40 40 H 1.09003 * 110.74563 * 279.50566 * 21 20 19 41 41 H 1.08998 * 110.50319 * 261.44788 * 22 18 17 42 42 H 1.09004 * 110.49959 * 23.99202 * 22 18 17 43 43 H 1.08998 * 117.49688 * 215.00810 * 23 9 7 44 44 H 1.09001 * 117.49960 * 0.02562 * 23 9 7 45 45 H 1.09001 * 117.49846 * 359.97438 * 24 9 7 46 46 H 1.09000 * 117.50050 * 144.99919 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0695 -1.2027 -0.1801 9 6 1.2721 -2.4871 0.2497 10 6 0.1224 -2.4102 1.2562 11 7 0.6165 -1.8526 2.5222 12 6 -0.4283 -1.8833 3.5544 13 1 -1.3448 -1.4457 3.1586 14 6 -0.6907 -3.3334 3.9753 15 6 -1.7119 -3.3473 5.1158 16 8 -1.2175 -2.5708 6.2088 17 6 -0.9989 -1.1934 5.8933 18 6 0.0337 -1.0864 4.7735 19 6 1.3929 -1.6107 5.2592 20 6 2.3808 -0.4294 5.1538 21 6 1.7544 0.4996 4.0840 22 6 0.2350 0.3899 4.3864 23 6 1.1158 -3.4500 -0.9291 24 6 2.0877 -3.7808 0.2063 25 1 -0.4850 0.8367 -0.0740 26 1 -0.2756 -3.4099 1.4303 27 1 -0.6653 -1.7695 0.8599 28 1 0.9686 -0.9160 2.3919 29 1 -1.0839 -3.8937 3.1271 30 1 0.2403 -3.7890 4.3128 31 1 -2.6531 -2.9236 4.7656 32 1 -1.8755 -4.3737 5.4444 33 1 -0.6319 -0.6720 6.7773 34 1 -1.9362 -0.7419 5.5679 35 1 1.7247 -2.4330 4.6252 36 1 1.3178 -1.9440 6.2942 37 1 2.4595 0.0883 6.1097 38 1 3.3606 -0.7793 4.8287 39 1 2.1030 1.5246 4.2108 40 1 1.9757 0.1368 3.0802 41 1 -0.3492 0.6352 3.4995 42 1 -0.0390 1.0427 5.2153 43 1 0.1939 -4.0286 -0.9875 44 1 1.5431 -3.1484 -1.8854 45 1 3.1540 -3.6967 -0.0036 46 1 1.8053 -4.5772 0.8949 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001560232221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:05 Heat of formation + Delta-G solvation = -43.553290 kcal Electronic energy + Delta-G solvation = -24353.882812 eV Core-core repulsion = 21242.897474 eV Total energy + Delta-G solvation = -3110.985338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49493 -38.66274 -37.85706 -35.49783 -34.18913 -31.83847 -31.46160 -29.57327 -27.69626 -26.69725 -25.56494 -23.95826 -22.90119 -22.49136 -21.60317 -20.76558 -19.24186 -18.16067 -17.24801 -17.07997 -16.72570 -16.61027 -16.27488 -15.77795 -15.41598 -15.01623 -14.81806 -14.52836 -14.12622 -13.91037 -13.79211 -13.29917 -13.05383 -12.91731 -12.74055 -12.61786 -12.40214 -12.33054 -12.19021 -12.00485 -11.95980 -11.83881 -11.71671 -11.28942 -11.24270 -11.11734 -10.96176 -10.88427 -10.54400 -10.32841 -9.98460 -8.88942 -7.98202 -6.13887 1.35037 1.40623 1.49022 2.39527 2.95855 3.00680 3.44086 3.67253 3.70755 3.76526 3.87066 4.12091 4.17896 4.24546 4.36612 4.39895 4.45503 4.56095 4.60866 4.65146 4.68554 4.75663 4.80045 4.82957 4.90981 4.92721 4.95181 5.00273 5.02367 5.09344 5.16965 5.18132 5.21580 5.29483 5.30870 5.40974 5.49075 5.53352 5.56949 5.62012 5.70378 5.99053 6.26817 6.47008 6.63486 6.83551 7.03622 7.45230 8.91807 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.016254 B = 0.007964 C = 0.006284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.213038 B = 3514.931223 C = 4455.025193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.041 3.959 3 Si 0.925 3.075 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.044 0.956 9 C 0.034 3.966 10 C 0.112 3.888 11 N -0.668 5.668 12 C 0.098 3.902 13 H 0.005 0.995 14 C -0.139 4.139 15 C 0.066 3.934 16 O -0.389 6.389 17 C 0.078 3.922 18 C -0.087 4.087 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.208 4.208 24 C -0.186 4.186 25 H 0.259 0.741 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.349 0.651 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -1.395 12.391 12.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.159 4.159 3 Si 0.751 3.249 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.532 4.532 8 H 0.062 0.938 9 C 0.034 3.966 10 C -0.017 4.017 11 N -0.303 5.303 12 C -0.013 4.013 13 H 0.023 0.977 14 C -0.178 4.178 15 C -0.011 4.011 16 O -0.307 6.307 17 C 0.001 3.999 18 C -0.088 4.088 19 C -0.132 4.132 20 C -0.149 4.149 21 C -0.171 4.171 22 C -0.151 4.151 23 C -0.247 4.247 24 C -0.223 4.223 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.172 0.828 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.152 -1.911 12.839 13.157 hybrid contribution -0.203 1.649 -1.608 2.312 sum -2.355 -0.262 11.230 11.478 Atomic orbital electron populations 1.70020 1.06503 1.26777 1.50205 1.25383 0.95290 1.00791 0.94467 0.86061 0.79679 0.81028 0.78176 1.20889 1.20234 1.19129 1.20685 0.93586 0.90797 1.48134 0.93770 1.19049 0.95418 0.88511 0.93668 1.21222 0.96064 0.95959 0.88494 1.60673 1.33477 1.29262 1.06895 1.21410 0.92266 0.95404 0.92187 0.97673 1.22214 1.00611 0.96337 0.98601 1.22628 0.94856 0.96929 0.86713 1.87883 1.86069 1.20891 1.35897 1.22685 0.96661 0.82710 0.97828 1.21606 0.97422 0.94858 0.94877 1.21973 0.92548 0.98128 1.00585 1.22278 0.98228 0.95977 0.98418 1.22688 0.95394 0.99801 0.99203 1.22395 0.96411 0.95681 1.00604 1.22941 0.99993 1.07510 0.94230 1.22782 0.95990 1.01654 1.01892 0.93153 0.94954 0.93893 0.82754 0.91967 0.90976 0.93231 0.86990 0.86856 0.93305 0.92024 0.91061 0.90093 0.92421 0.91230 0.93276 0.94378 0.89178 0.90792 0.91522 0.91170 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.96 10.78 21.45 0.23 -47.73 16 2 C 0.04 2.14 4.27 84.65 0.36 2.50 16 3 Si 0.92 41.72 29.56 68.60 2.03 43.74 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.49 -26.47 8.46 25.60 0.22 -26.25 16 8 H 0.04 2.42 7.84 -2.91 -0.02 2.40 16 9 C 0.03 1.68 2.07 -52.93 -0.11 1.57 16 10 C 0.11 5.21 4.72 86.30 0.41 5.62 16 11 N -0.67 -28.15 5.20 -491.48 -2.55 -30.70 16 12 C 0.10 3.47 1.53 44.93 0.07 3.54 16 13 H 0.01 0.21 8.05 -2.38 -0.02 0.19 16 14 C -0.14 -4.29 5.11 30.71 0.16 -4.14 16 15 C 0.07 1.66 6.83 72.02 0.49 2.15 16 16 O -0.39 -10.37 10.44 -148.98 -1.56 -11.93 16 17 C 0.08 1.96 5.16 71.88 0.37 2.33 16 18 C -0.09 -2.59 0.52 -51.84 -0.03 -2.62 16 19 C -0.09 -2.77 5.12 31.24 0.16 -2.61 16 20 C -0.11 -3.11 6.83 31.71 0.22 -2.89 16 21 C -0.13 -4.32 6.48 32.04 0.21 -4.11 16 22 C -0.11 -3.47 5.41 31.71 0.17 -3.30 16 23 C -0.21 -9.53 9.96 30.62 0.30 -9.22 16 24 C -0.19 -8.16 9.93 30.62 0.30 -7.86 16 25 H 0.26 13.40 8.32 -92.71 -0.77 12.63 16 26 H 0.03 1.42 6.46 -2.38 -0.02 1.40 16 27 H 0.04 2.27 5.98 -2.39 -0.01 2.25 16 28 H 0.35 15.83 3.36 -89.69 -0.30 15.53 16 29 H 0.06 1.97 6.76 -2.39 -0.02 1.96 16 30 H 0.07 2.31 6.89 -2.38 -0.02 2.30 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.06 2.10 6.17 -2.39 -0.01 2.09 16 36 H 0.07 1.87 7.56 -2.39 -0.02 1.85 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.02 16 40 H 0.05 1.99 5.83 -2.39 -0.01 1.97 16 41 H 0.04 1.38 7.76 -2.39 -0.02 1.36 16 42 H 0.09 2.21 7.84 -2.38 -0.02 2.19 16 43 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 46 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -55.54 338.09 2.10 -53.45 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: 0.65 Total: 38.46 kcal Atomic # 6 Polarization: -48.59 SS G_CDS: 3.30 Total: -45.29 kcal Atomic # 7 Polarization: -76.11 SS G_CDS: -2.32 Total: -78.44 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: -1.56 Total: -11.93 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -55.54 2.10 -53.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001560232221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.896 kcal (2) G-P(sol) polarization free energy of solvation -55.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds