Wall clock time and date at job start Tue Mar 31 2020 01:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99655 * 2 1 4 4 H 1.48493 * 109.47136 * 239.99800 * 3 2 1 5 5 H 1.48499 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46999 * 119.99591 * 3 2 1 7 7 C 1.38804 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99621 * 201.16116 * 7 2 1 9 9 N 1.36937 * 120.00203 * 21.15429 * 7 2 1 10 10 C 1.46497 * 119.99786 * 36.80095 * 9 7 2 11 11 C 1.52995 * 109.47288 * 89.99873 * 10 9 7 12 12 H 1.09001 * 109.87048 * 59.29808 * 11 10 9 13 13 C 1.54251 * 109.88363 * 180.31043 * 11 10 9 14 14 C 1.54102 * 104.00872 * 121.98942 * 13 11 10 15 15 C 1.54270 * 102.88366 * 20.23438 * 14 13 11 16 16 O 1.43803 * 109.88232 * 298.28404 * 11 10 9 17 17 C 1.52134 * 110.60545 * 262.17799 * 14 13 11 18 18 C 1.53147 * 109.57976 * 294.60204 * 17 14 13 19 19 C 1.53005 * 109.38752 * 301.28989 * 18 17 14 20 20 C 1.53005 * 109.58869 * 60.59798 * 19 18 17 21 21 C 1.52136 * 110.59905 * 138.28604 * 14 13 11 22 22 C 1.46501 * 119.99906 * 216.79974 * 9 7 2 23 23 C 1.52997 * 117.49989 * 14.49243 * 22 9 7 24 24 C 1.52998 * 117.50042 * 305.82861 * 22 9 7 25 25 H 0.96995 * 119.99992 * 354.78050 * 1 2 3 26 26 H 1.08998 * 109.47015 * 329.99620 * 10 9 7 27 27 H 1.09000 * 109.46796 * 209.99862 * 10 9 7 28 28 H 1.08996 * 110.52368 * 240.62446 * 13 11 10 29 29 H 1.09000 * 110.52154 * 3.22830 * 13 11 10 30 30 H 1.09002 * 110.62634 * 82.29517 * 15 14 13 31 31 H 1.09004 * 110.62341 * 205.15500 * 15 14 13 32 32 H 1.09006 * 109.44904 * 54.63329 * 17 14 13 33 33 H 1.09000 * 109.45442 * 174.56720 * 17 14 13 34 34 H 1.09000 * 109.48047 * 181.31264 * 18 17 14 35 35 H 1.09002 * 109.49274 * 61.27283 * 18 17 14 36 36 H 1.08996 * 109.45145 * 300.56123 * 19 18 17 37 37 H 1.08999 * 109.44667 * 180.63034 * 19 18 17 38 38 H 1.08995 * 109.48706 * 179.42430 * 20 19 18 39 39 H 1.09000 * 109.50004 * 59.37991 * 20 19 18 40 40 H 1.08996 * 109.45208 * 185.42927 * 21 14 13 41 41 H 1.09005 * 109.45064 * 305.38434 * 21 14 13 42 42 H 1.09000 * 115.54970 * 160.16619 * 22 9 7 43 43 H 1.09000 * 117.50352 * 359.97438 * 23 22 9 44 44 H 1.09001 * 117.49661 * 145.01961 * 23 22 9 45 45 H 1.08999 * 117.50240 * 214.97604 * 24 22 9 46 46 H 1.08998 * 117.49703 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0357 -1.2333 0.3382 9 7 1.3949 -2.3482 -0.4269 10 6 0.4531 -2.2996 -1.5480 11 6 1.2093 -2.5211 -2.8594 12 1 1.7106 -3.4888 -2.8391 13 6 0.2272 -2.4639 -4.0474 14 6 0.7816 -1.3333 -4.9357 15 6 2.2495 -1.2219 -4.4744 16 8 2.1759 -1.4735 -3.0495 17 6 0.0391 -0.0320 -4.6717 18 6 -1.4221 -0.1774 -5.1067 19 6 -1.4762 -0.5333 -6.5938 20 6 -0.7525 -1.8605 -6.8304 21 6 0.7122 -1.7237 -6.4045 22 6 1.6784 -3.6231 0.2369 23 6 2.3885 -3.5719 1.5911 24 6 3.1431 -4.0511 0.3484 25 1 -0.4850 0.8365 0.0764 26 1 -0.0352 -1.3253 -1.5702 27 1 -0.2981 -3.0798 -1.4254 28 1 0.2268 -3.4100 -4.5888 29 1 -0.7778 -2.2225 -3.7011 30 1 2.8648 -1.9752 -4.9663 31 1 2.6385 -0.2226 -4.6698 32 1 0.0797 0.1995 -3.6073 33 1 0.5075 0.7742 -5.2363 34 1 -1.9467 0.7630 -4.9385 35 1 -1.8975 -0.9680 -4.5261 36 1 -0.9916 0.2527 -7.1730 37 1 -2.5161 -0.6261 -6.9071 38 1 -0.8009 -2.1174 -7.8885 39 1 -1.2301 -2.6450 -6.2435 40 1 1.1954 -0.9551 -7.0076 41 1 1.2231 -2.6753 -6.5517 42 1 0.9353 -4.4064 0.0875 43 1 2.6452 -2.5898 1.9881 44 1 2.1127 -4.3217 2.3326 45 1 3.3634 -5.1160 0.2730 46 1 3.8957 -3.3844 -0.0724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653268564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:01 Heat of formation + Delta-G solvation = -16.950793 kcal Electronic energy + Delta-G solvation = -23890.861946 eV Core-core repulsion = 20781.030179 eV Total energy + Delta-G solvation = -3109.831767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.07271 -37.10983 -36.29794 -33.34686 -31.49872 -31.07326 -30.65426 -29.04038 -25.51098 -25.00472 -23.34321 -22.53669 -21.27330 -21.00083 -20.46199 -19.63049 -18.24925 -16.39369 -15.83842 -15.34857 -14.93281 -14.73816 -14.29298 -14.18248 -14.00291 -13.73958 -13.44200 -13.14334 -12.65290 -12.32727 -12.14727 -11.95893 -11.65470 -11.28786 -11.16367 -11.04460 -10.95214 -10.85453 -10.67986 -10.58948 -10.50325 -10.31858 -10.13187 -9.94148 -9.89920 -9.75783 -9.64137 -9.47837 -9.13010 -8.69085 -8.26977 -6.32875 -5.67404 -3.19890 3.45871 3.49929 3.57260 4.51028 4.60062 4.75576 4.85451 5.00683 5.05466 5.18533 5.31680 5.40755 5.45781 5.49940 5.52046 5.61552 5.67060 5.77222 5.80825 5.82574 5.96748 5.99247 6.03396 6.11751 6.16019 6.17809 6.21901 6.25714 6.27806 6.33404 6.42808 6.48481 6.53685 6.56637 6.66895 6.71912 6.76589 6.81439 6.86854 7.09050 7.26940 7.73203 7.88591 7.96481 8.65508 9.29806 9.93867 10.48124 11.34568 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.006687 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.795802 B = 4186.480713 C = 4989.473026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.021 3.979 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.056 0.944 9 N -0.543 5.543 10 C 0.148 3.852 11 C 0.062 3.938 12 H 0.043 0.957 13 C -0.139 4.139 14 C -0.085 4.085 15 C 0.047 3.953 16 O -0.333 6.333 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.102 4.102 22 C 0.127 3.873 23 C -0.198 4.198 24 C -0.228 4.228 25 H 0.254 0.746 26 H 0.108 0.892 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -3.986 -12.176 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.211 1.211 7 C -0.365 4.365 8 H 0.074 0.926 9 N -0.258 5.258 10 C 0.021 3.979 11 C 0.001 3.999 12 H 0.061 0.939 13 C -0.177 4.177 14 C -0.085 4.085 15 C -0.030 4.030 16 O -0.251 6.251 17 C -0.140 4.140 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.139 4.139 22 C 0.017 3.983 23 C -0.237 4.237 24 C -0.269 4.269 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.969 -3.692 -12.063 12.768 hybrid contribution 0.528 0.687 -0.198 0.889 sum -1.441 -3.005 -12.261 12.706 Atomic orbital electron populations 1.69852 1.05481 1.25783 1.52754 1.24999 0.94919 0.98229 0.99682 0.86475 0.79246 0.83432 0.78251 1.20641 1.21902 1.21135 1.18719 0.93882 0.84736 1.39212 0.92622 1.43284 1.49391 1.01871 1.31255 1.21249 0.90228 1.03360 0.83032 1.23629 0.89065 0.90192 0.96966 0.93900 1.23025 1.00964 0.97379 0.96332 1.21450 0.96245 0.96164 0.94641 1.23503 0.94477 1.00225 0.84837 1.89299 1.60588 1.55880 1.19307 1.21342 0.94386 0.95521 1.02747 1.21573 0.97127 1.01446 0.95462 1.21523 0.99645 0.97298 0.97016 1.21543 0.95816 0.97854 1.00251 1.21368 0.96534 1.00900 0.95147 1.21122 0.91281 0.90736 0.95170 1.23067 1.07134 1.01980 0.91477 1.23358 1.00184 0.98861 1.04526 0.93630 0.87455 0.94851 0.92025 0.90393 0.93614 0.90347 0.90190 0.92658 0.92274 0.91600 0.92440 0.92583 0.92594 0.91843 0.92229 0.92174 0.89710 0.88379 0.91015 0.91219 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.48 11.39 55.49 0.63 -24.85 16 2 C 0.02 0.58 4.97 -17.43 -0.09 0.49 16 3 Si 0.90 22.39 29.61 -169.99 -5.03 17.36 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.49 7.50 -15.06 -0.11 -6.60 16 8 H 0.06 1.59 7.16 -52.48 -0.38 1.21 16 9 N -0.54 -13.59 2.76 -165.67 -0.46 -14.05 16 10 C 0.15 3.41 4.86 -4.05 -0.02 3.39 16 11 C 0.06 1.24 3.69 -26.08 -0.10 1.14 16 12 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 13 C -0.14 -2.22 4.73 -25.50 -0.12 -2.35 16 14 C -0.08 -1.26 0.58 -154.15 -0.09 -1.35 16 15 C 0.05 0.81 6.61 37.82 0.25 1.06 16 16 O -0.33 -7.37 10.58 -35.23 -0.37 -7.74 16 17 C -0.10 -1.60 4.67 -27.10 -0.13 -1.73 16 18 C -0.12 -1.59 5.74 -26.65 -0.15 -1.74 16 19 C -0.12 -1.31 5.90 -26.73 -0.16 -1.47 16 20 C -0.12 -1.28 5.76 -26.65 -0.15 -1.43 16 21 C -0.10 -1.23 4.57 -27.10 -0.12 -1.35 16 22 C 0.13 2.80 6.61 -67.93 -0.45 2.35 16 23 C -0.20 -4.11 9.81 -26.69 -0.26 -4.37 16 24 C -0.23 -4.60 10.08 -26.69 -0.27 -4.87 16 25 H 0.25 7.05 8.32 -40.82 -0.34 6.71 16 26 H 0.11 2.80 5.45 -51.93 -0.28 2.52 16 27 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 28 H 0.06 0.88 7.69 -51.93 -0.40 0.48 16 29 H 0.08 1.27 5.77 -51.93 -0.30 0.97 16 30 H 0.05 0.71 8.02 -51.93 -0.42 0.30 16 31 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 32 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.92 6.50 -51.93 -0.34 0.59 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.71 7.41 -51.93 -0.38 0.33 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 42 H 0.09 1.71 8.10 -51.93 -0.42 1.29 16 43 H 0.10 2.27 6.95 -51.93 -0.36 1.90 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.86 7.98 -51.93 -0.41 1.45 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -28.93 346.64 -10.28 -39.21 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.31 Total: 3.68 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: -1.97 Total: -18.83 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.18 Total: -38.90 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.37 Total: -7.74 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.93 -10.28 -39.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653268564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.264 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds