Wall clock time and date at job start Tue Mar 31 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86806 * 119.99655 * 2 1 4 4 H 1.48493 * 109.47136 * 239.99800 * 3 2 1 5 5 H 1.48499 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46999 * 119.99591 * 3 2 1 7 7 C 1.38804 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99621 * 201.16116 * 7 2 1 9 9 N 1.36937 * 120.00203 * 21.15429 * 7 2 1 10 10 C 1.46497 * 119.99786 * 36.80095 * 9 7 2 11 11 C 1.52995 * 109.47288 * 89.99873 * 10 9 7 12 12 H 1.09001 * 109.87048 * 59.29808 * 11 10 9 13 13 C 1.54251 * 109.88363 * 180.31043 * 11 10 9 14 14 C 1.54102 * 104.00872 * 121.98942 * 13 11 10 15 15 C 1.54270 * 102.88366 * 20.23438 * 14 13 11 16 16 O 1.43803 * 109.88232 * 298.28404 * 11 10 9 17 17 C 1.52134 * 110.60545 * 262.17799 * 14 13 11 18 18 C 1.53147 * 109.57976 * 294.60204 * 17 14 13 19 19 C 1.53005 * 109.38752 * 301.28989 * 18 17 14 20 20 C 1.53005 * 109.58869 * 60.59798 * 19 18 17 21 21 C 1.52136 * 110.59905 * 138.28604 * 14 13 11 22 22 C 1.46501 * 119.99906 * 216.79974 * 9 7 2 23 23 C 1.52997 * 117.49989 * 14.49243 * 22 9 7 24 24 C 1.52998 * 117.50042 * 305.82861 * 22 9 7 25 25 H 0.96995 * 119.99992 * 354.78050 * 1 2 3 26 26 H 1.08998 * 109.47015 * 329.99620 * 10 9 7 27 27 H 1.09000 * 109.46796 * 209.99862 * 10 9 7 28 28 H 1.08996 * 110.52368 * 240.62446 * 13 11 10 29 29 H 1.09000 * 110.52154 * 3.22830 * 13 11 10 30 30 H 1.09002 * 110.62634 * 82.29517 * 15 14 13 31 31 H 1.09004 * 110.62341 * 205.15500 * 15 14 13 32 32 H 1.09006 * 109.44904 * 54.63329 * 17 14 13 33 33 H 1.09000 * 109.45442 * 174.56720 * 17 14 13 34 34 H 1.09000 * 109.48047 * 181.31264 * 18 17 14 35 35 H 1.09002 * 109.49274 * 61.27283 * 18 17 14 36 36 H 1.08996 * 109.45145 * 300.56123 * 19 18 17 37 37 H 1.08999 * 109.44667 * 180.63034 * 19 18 17 38 38 H 1.08995 * 109.48706 * 179.42430 * 20 19 18 39 39 H 1.09000 * 109.50004 * 59.37991 * 20 19 18 40 40 H 1.08996 * 109.45208 * 185.42927 * 21 14 13 41 41 H 1.09005 * 109.45064 * 305.38434 * 21 14 13 42 42 H 1.09000 * 115.54970 * 160.16619 * 22 9 7 43 43 H 1.09000 * 117.50352 * 359.97438 * 23 22 9 44 44 H 1.09001 * 117.49661 * 145.01961 * 23 22 9 45 45 H 1.08999 * 117.50240 * 214.97604 * 24 22 9 46 46 H 1.08998 * 117.49703 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0357 -1.2333 0.3382 9 7 1.3949 -2.3482 -0.4269 10 6 0.4531 -2.2996 -1.5480 11 6 1.2093 -2.5211 -2.8594 12 1 1.7106 -3.4888 -2.8391 13 6 0.2272 -2.4639 -4.0474 14 6 0.7816 -1.3333 -4.9357 15 6 2.2495 -1.2219 -4.4744 16 8 2.1759 -1.4735 -3.0495 17 6 0.0391 -0.0320 -4.6717 18 6 -1.4221 -0.1774 -5.1067 19 6 -1.4762 -0.5333 -6.5938 20 6 -0.7525 -1.8605 -6.8304 21 6 0.7122 -1.7237 -6.4045 22 6 1.6784 -3.6231 0.2369 23 6 2.3885 -3.5719 1.5911 24 6 3.1431 -4.0511 0.3484 25 1 -0.4850 0.8365 0.0764 26 1 -0.0352 -1.3253 -1.5702 27 1 -0.2981 -3.0798 -1.4254 28 1 0.2268 -3.4100 -4.5888 29 1 -0.7778 -2.2225 -3.7011 30 1 2.8648 -1.9752 -4.9663 31 1 2.6385 -0.2226 -4.6698 32 1 0.0797 0.1995 -3.6073 33 1 0.5075 0.7742 -5.2363 34 1 -1.9467 0.7630 -4.9385 35 1 -1.8975 -0.9680 -4.5261 36 1 -0.9916 0.2527 -7.1730 37 1 -2.5161 -0.6261 -6.9071 38 1 -0.8009 -2.1174 -7.8885 39 1 -1.2301 -2.6450 -6.2435 40 1 1.1954 -0.9551 -7.0076 41 1 1.2231 -2.6753 -6.5517 42 1 0.9353 -4.4064 0.0875 43 1 2.6452 -2.5898 1.9881 44 1 2.1127 -4.3217 2.3326 45 1 3.3634 -5.1160 0.2730 46 1 3.8957 -3.3844 -0.0724 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653268564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:00 Heat of formation + Delta-G solvation = -31.538516 kcal Electronic energy + Delta-G solvation = -23891.494517 eV Core-core repulsion = 20781.030179 eV Total energy + Delta-G solvation = -3110.464338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.37330 -38.77008 -37.70656 -35.22552 -32.98071 -32.71024 -31.70366 -30.72018 -27.22881 -26.37848 -25.12258 -23.56614 -22.93979 -22.22203 -21.95094 -21.46095 -19.43255 -18.30384 -17.38222 -16.96311 -16.39072 -16.21997 -16.02525 -15.66473 -15.35856 -15.19829 -14.70898 -14.48555 -14.22619 -13.73341 -13.51924 -13.31974 -13.05473 -12.93759 -12.86610 -12.70451 -12.38500 -12.33102 -12.20984 -12.15029 -12.00170 -11.88071 -11.72304 -11.57326 -11.36673 -11.11845 -10.91159 -10.87558 -10.79855 -10.36007 -10.22125 -8.33614 -7.75547 -5.32024 1.39903 1.44285 1.51229 2.51157 3.16282 3.23496 3.48196 3.53857 3.65917 3.76691 3.90706 4.12014 4.25499 4.30693 4.31677 4.33961 4.36413 4.50140 4.51547 4.59498 4.64510 4.64872 4.76325 4.79173 4.83216 4.88975 4.94355 4.95273 5.05348 5.07441 5.08860 5.18289 5.20200 5.25572 5.31411 5.36453 5.38277 5.44122 5.56513 5.57673 5.63503 5.72224 5.87192 6.35964 6.57841 7.24375 7.94674 8.42827 9.20450 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.017498 B = 0.006687 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.795802 B = 4186.480713 C = 4989.473026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.021 4.021 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.038 0.962 9 N -0.561 5.561 10 C 0.148 3.852 11 C 0.068 3.932 12 H 0.042 0.958 13 C -0.129 4.129 14 C -0.076 4.076 15 C 0.040 3.960 16 O -0.378 6.378 17 C -0.100 4.100 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.097 4.097 22 C 0.101 3.899 23 C -0.195 4.195 24 C -0.206 4.206 25 H 0.249 0.751 26 H 0.075 0.925 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -5.551 -14.262 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.217 4.217 3 Si 0.771 3.229 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.056 0.944 9 N -0.277 5.277 10 C 0.022 3.978 11 C 0.008 3.992 12 H 0.060 0.940 13 C -0.167 4.167 14 C -0.076 4.076 15 C -0.037 4.037 16 O -0.297 6.297 17 C -0.138 4.138 18 C -0.154 4.154 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.134 4.134 22 C -0.007 4.007 23 C -0.234 4.234 24 C -0.247 4.247 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.029 -5.275 -14.151 15.237 hybrid contribution 0.601 1.140 0.492 1.380 sum -1.427 -4.135 -13.658 14.342 Atomic orbital electron populations 1.69958 1.06241 1.25751 1.54181 1.25466 0.95524 1.00285 1.00471 0.85749 0.78251 0.81052 0.77853 1.21394 1.21674 1.20590 1.18670 0.93149 0.86110 1.38279 0.94425 1.43441 1.49629 1.02271 1.32374 1.21178 0.90486 1.01783 0.84325 1.23432 0.89371 0.89533 0.96866 0.93970 1.22954 0.99401 0.99162 0.95146 1.21394 0.94259 0.95199 0.96745 1.23740 0.96443 1.00765 0.82748 1.89232 1.61273 1.56599 1.22570 1.21272 0.96451 0.96428 0.99602 1.21547 0.95186 1.01174 0.97470 1.21498 1.00922 0.97851 0.94693 1.21551 0.94578 0.97414 1.01680 1.21354 0.97875 1.01805 0.92380 1.21436 0.93009 0.90173 0.96102 1.23054 1.06891 1.01487 0.91928 1.23274 0.98001 1.00317 1.03080 0.94147 0.90724 0.94031 0.89314 0.91074 0.91656 0.90549 0.95253 0.91983 0.92446 0.92558 0.91697 0.91017 0.90187 0.92037 0.91176 0.90912 0.87481 0.91402 0.87822 0.87595 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 11.39 21.65 0.25 -53.96 16 2 C -0.02 -1.20 4.97 84.86 0.42 -0.77 16 3 Si 0.94 47.59 29.61 68.60 2.03 49.62 16 4 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 6 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.23 -13.16 7.50 84.03 0.63 -12.53 16 8 H 0.04 2.24 7.16 -2.91 -0.02 2.22 16 9 N -0.56 -28.66 2.76 -678.06 -1.87 -30.53 16 10 C 0.15 7.02 4.86 86.38 0.42 7.44 16 11 C 0.07 2.73 3.69 31.02 0.11 2.85 16 12 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 13 C -0.13 -3.99 4.73 31.39 0.15 -3.84 16 14 C -0.08 -2.17 0.58 -51.95 -0.03 -2.20 16 15 C 0.04 1.34 6.61 72.41 0.48 1.82 16 16 O -0.38 -17.10 10.58 -148.98 -1.58 -18.67 16 17 C -0.10 -3.15 4.67 30.36 0.14 -3.01 16 18 C -0.12 -3.04 5.74 30.65 0.18 -2.86 16 19 C -0.11 -2.18 5.90 30.60 0.18 -2.00 16 20 C -0.11 -2.07 5.76 30.64 0.18 -1.90 16 21 C -0.10 -2.00 4.57 30.36 0.14 -1.87 16 22 C 0.10 4.41 6.61 44.99 0.30 4.71 16 23 C -0.19 -7.94 9.81 30.62 0.30 -7.64 16 24 C -0.21 -8.01 10.08 30.62 0.31 -7.70 16 25 H 0.25 14.40 8.32 -92.71 -0.77 13.63 16 26 H 0.08 4.09 5.45 -2.39 -0.01 4.08 16 27 H 0.04 1.83 8.04 -2.39 -0.02 1.81 16 28 H 0.09 2.27 7.69 -2.39 -0.02 2.25 16 29 H 0.07 2.32 5.77 -2.39 -0.01 2.30 16 30 H 0.07 1.92 8.02 -2.39 -0.02 1.91 16 31 H 0.08 2.54 8.03 -2.38 -0.02 2.52 16 32 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.57 6.50 -2.39 -0.02 1.55 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.16 7.41 -2.39 -0.02 1.14 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.37 8.09 -2.38 -0.02 1.35 16 42 H 0.11 4.13 8.10 -2.39 -0.02 4.11 16 43 H 0.07 3.19 6.95 -2.39 -0.02 3.17 16 44 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 45 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.06 2.67 7.98 -2.39 -0.02 2.65 16 Total: -1.00 -65.05 346.64 3.66 -61.39 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.92 Total: 21.66 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.90 Total: -29.52 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.62 Total: -84.48 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.58 Total: -18.67 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -65.05 3.66 -61.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653268564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.854 kcal (2) G-P(sol) polarization free energy of solvation -65.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds