Wall clock time and date at job start Tue Mar 31 2020 01:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47133 * 2 1 4 4 C 1.53007 * 109.47063 * 184.99761 * 3 2 1 5 5 C 1.47200 * 109.47425 * 304.99760 * 3 2 1 6 6 C 3.47004 * 80.96397 * 323.39303 * 2 1 3 7 7 C 4.84759 * 76.49658 * 317.56579 * 2 1 3 8 8 N 1.46898 * 109.46867 * 56.20911 * 7 6 5 9 9 C 1.46845 * 111.00565 * 45.78956 * 8 7 6 10 10 C 1.53034 * 109.52676 * 185.84030 * 9 8 7 11 11 C 1.53126 * 109.27454 * 300.81918 * 10 9 8 12 12 C 1.53119 * 109.16048 * 57.65518 * 11 10 9 13 13 C 1.46850 * 110.99813 * 170.00021 * 8 7 6 14 14 O 1.42900 * 109.47236 * 65.00085 * 3 2 1 15 15 C 1.42902 * 114.00206 * 60.00146 * 14 3 2 16 16 C 1.50696 * 109.47113 * 180.02562 * 15 14 3 17 17 H 1.08005 * 120.00055 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99952 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99962 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47260 * 90.00237 * 20 18 16 22 22 H 1.48502 * 109.47169 * 210.00033 * 20 18 16 23 23 H 1.48501 * 109.47369 * 330.00164 * 20 18 16 24 24 H 1.08999 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47161 * 300.00052 * 1 2 3 26 26 H 1.09002 * 109.47216 * 60.00007 * 1 2 3 27 27 H 1.09000 * 109.47018 * 239.99229 * 2 1 3 28 28 H 1.09003 * 109.46698 * 120.00055 * 2 1 3 29 29 H 1.08999 * 109.47085 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.47001 * 300.00156 * 4 3 2 31 31 H 1.09006 * 109.46823 * 59.99878 * 4 3 2 32 32 H 1.08995 * 109.46793 * 296.20508 * 7 6 5 33 33 H 1.09001 * 109.46589 * 176.20475 * 7 6 5 34 34 H 1.08995 * 109.46315 * 65.81881 * 9 8 7 35 35 H 1.09005 * 109.45975 * 305.85394 * 9 8 7 36 36 H 1.08997 * 109.50792 * 180.88024 * 10 9 8 37 37 H 1.09006 * 109.50471 * 60.75677 * 10 9 8 38 38 H 1.08999 * 109.52028 * 177.55723 * 11 10 9 39 39 H 1.08993 * 109.52259 * 297.74866 * 11 10 9 40 40 H 1.09004 * 109.50440 * 62.28501 * 12 11 10 41 41 H 1.09003 * 109.50154 * 182.40625 * 12 11 10 42 42 H 1.09005 * 109.46186 * 54.13967 * 13 8 7 43 43 H 1.08998 * 109.46012 * 294.17361 * 13 8 7 44 44 H 1.09005 * 109.46666 * 300.00016 * 15 14 3 45 45 H 1.08998 * 109.46725 * 59.99693 * 15 14 3 46 46 H 0.97003 * 119.99687 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 -0.1257 5 6 1.4531 2.1704 -1.1368 6 6 0.9850 2.7510 -2.0436 7 6 0.3981 3.4789 -3.1805 8 7 1.3605 3.5125 -4.2897 9 6 1.9602 2.1897 -4.5065 10 6 3.0586 2.2937 -5.5671 11 6 2.4535 2.8204 -6.8714 12 6 1.7933 4.1765 -6.6076 13 6 0.7317 4.0179 -5.5168 14 8 1.6620 2.0813 1.2210 15 6 2.1824 1.4501 2.3927 16 6 1.7230 2.2027 3.6148 17 1 1.0966 3.0759 3.5075 18 6 2.1024 1.7764 4.8700 19 7 1.7019 2.4335 5.9365 20 14 3.1853 0.2657 5.0556 21 1 4.6128 0.6743 5.0348 22 1 2.8814 -0.4058 6.3448 23 1 2.9225 -0.6724 3.9348 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.9282 2.4719 -0.1261 30 1 3.9994 0.9052 0.7161 31 1 3.8532 0.9568 -1.0571 32 1 0.1595 4.4977 -2.8753 33 1 -0.5121 2.9739 -3.5042 34 1 1.1927 1.4941 -4.8455 35 1 2.3905 1.8286 -3.5723 36 1 3.4929 1.3089 -5.7390 37 1 3.8334 2.9787 -5.2227 38 1 3.2402 2.9371 -7.6168 39 1 1.7060 2.1162 -7.2366 40 1 2.5482 4.8911 -6.2795 41 1 1.3236 4.5368 -7.5229 42 1 0.2696 4.9846 -5.3165 43 1 -0.0301 3.3137 -5.8511 44 1 1.8220 0.4226 2.4423 45 1 3.2717 1.4516 2.3527 46 1 1.9685 2.1334 6.8195 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002294461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:57 Heat of formation + Delta-G solvation = -6.925702 kcal Electronic energy + Delta-G solvation = -22022.441850 eV Core-core repulsion = 18913.044803 eV Total energy + Delta-G solvation = -3109.397047 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.25869 -38.55582 -34.78509 -33.61855 -32.41659 -31.54544 -30.89156 -29.69306 -28.04503 -26.97018 -23.81191 -23.27485 -23.07300 -22.39870 -20.20967 -19.90133 -17.69469 -16.55031 -16.12513 -15.60623 -15.17218 -15.06308 -14.80716 -14.67218 -14.28572 -13.88921 -13.81620 -13.42627 -13.11938 -12.95989 -12.85162 -12.61334 -12.35937 -12.25900 -11.72645 -11.62689 -11.44865 -11.12410 -11.02543 -10.99029 -10.82615 -10.73946 -10.66653 -10.61149 -10.55143 -10.05814 -9.81040 -9.69136 -9.08376 -8.84978 -8.49531 -8.40693 -6.12437 -4.11276 2.70228 2.90666 3.23227 3.30342 3.30773 3.83625 4.20239 4.33960 4.55892 4.63840 4.68320 4.93429 4.98394 5.09420 5.14246 5.18175 5.22488 5.29058 5.35745 5.38204 5.41023 5.51167 5.57881 5.64874 5.67122 5.71707 5.75979 5.82727 5.87299 5.88108 5.97098 6.09174 6.12776 6.16112 6.21010 6.44493 6.44694 6.62605 6.70622 6.83382 6.91308 7.00715 7.58145 7.82623 7.99597 8.64171 8.99326 9.46290 11.00646 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.031945 B = 0.003276 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.296203 B = 8545.937476 C = 8704.950216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.144 4.144 3 C 0.221 3.779 4 C -0.171 4.171 5 C -0.119 4.119 6 C -0.190 4.190 7 C 0.176 3.824 8 N -0.535 5.535 9 C 0.052 3.948 10 C -0.117 4.117 11 C -0.122 4.122 12 C -0.116 4.116 13 C 0.055 3.945 14 O -0.360 6.360 15 C 0.165 3.835 16 C -0.518 4.518 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.265 1.265 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.009 0.991 45 H 0.004 0.996 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -2.365 -24.716 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.181 3.819 4 C -0.229 4.229 5 C -0.121 4.121 6 C -0.191 4.191 7 C 0.051 3.949 8 N -0.260 5.260 9 C -0.075 4.075 10 C -0.155 4.155 11 C -0.160 4.160 12 C -0.154 4.154 13 C -0.073 4.073 14 O -0.280 6.280 15 C 0.091 3.909 16 C -0.556 4.556 17 H 0.100 0.900 18 C -0.129 4.129 19 N -0.533 5.533 20 Si 0.699 3.301 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.190 1.190 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.027 0.973 45 H 0.021 0.979 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.885 -1.870 -24.379 24.467 hybrid contribution 0.081 -1.536 0.112 1.542 sum 0.966 -3.405 -24.267 24.524 Atomic orbital electron populations 1.21689 0.94997 1.00908 1.02795 1.22108 0.97606 0.95898 1.02570 1.18014 0.91980 0.89509 0.82425 1.22358 0.94984 1.03338 1.02180 1.21705 0.97125 0.98427 0.94824 1.21705 1.01466 0.98855 0.97076 1.18935 0.91860 0.98964 0.85189 1.62033 1.32878 1.26061 1.05035 1.22158 0.96579 0.89021 0.99779 1.21598 0.98121 1.01267 0.94534 1.21591 0.99947 0.96943 0.97471 1.21580 0.98553 0.97802 0.97488 1.22103 0.95581 1.00033 0.89576 1.88078 1.74172 1.53593 1.12150 1.20707 0.93219 0.93738 0.83277 1.20865 1.32690 1.14120 0.87882 0.89978 1.24747 0.95897 0.96817 0.95401 1.69874 1.45399 1.39937 0.98104 0.86895 0.81400 0.83649 0.78132 1.19846 1.20747 1.18973 0.93238 0.91186 0.93155 0.91732 0.90274 0.91363 0.91018 0.92123 0.88294 0.92845 0.95071 0.90011 0.91625 0.90992 0.91869 0.92404 0.90936 0.91553 0.90451 0.94839 0.97312 0.97860 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.48 37.16 0.35 -2.03 16 2 C -0.14 -2.38 4.76 -26.73 -0.13 -2.51 16 3 C 0.22 4.12 0.75 -93.41 -0.07 4.05 16 4 C -0.17 -2.83 8.21 37.16 0.30 -2.52 16 5 C -0.12 -2.11 10.41 -37.12 -0.39 -2.50 16 6 C -0.19 -3.00 11.51 -37.12 -0.43 -3.42 16 7 C 0.18 2.13 5.77 -6.61 -0.04 2.09 16 8 N -0.54 -6.02 4.79 -238.19 -1.14 -7.16 16 9 C 0.05 0.57 5.08 -3.84 -0.02 0.55 16 10 C -0.12 -1.06 6.09 -26.65 -0.16 -1.23 16 11 C -0.12 -0.93 6.00 -26.60 -0.16 -1.09 16 12 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 13 C 0.05 0.48 5.42 -3.83 -0.02 0.46 16 14 O -0.36 -8.55 9.46 -35.23 -0.33 -8.88 16 15 C 0.17 4.14 3.96 36.00 0.14 4.28 16 16 C -0.52 -15.35 9.99 -34.44 -0.34 -15.70 16 17 H 0.08 2.69 8.06 -52.48 -0.42 2.26 16 18 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 19 N -0.89 -27.60 13.96 55.43 0.77 -26.83 16 20 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 1.31 7.82 -51.93 -0.41 0.91 16 26 H 0.05 0.78 7.09 -51.93 -0.37 0.41 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.36 6.29 -51.93 -0.33 1.03 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 1.04 6.36 -51.93 -0.33 0.71 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.01 0.22 5.36 -51.93 -0.28 -0.05 16 45 H 0.00 0.09 5.85 -51.93 -0.30 -0.21 16 46 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 359.15 15.07 5.41 5.41 Total: -1.00 -31.74 359.15 -9.45 -41.19 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.28 Total: -1.65 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.22 Total: -18.56 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.37 Total: -33.98 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.33 Total: -8.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -9.45 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002294461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.264 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds