Wall clock time and date at job start Tue Mar 31 2020 01:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.47203 * 109.46868 * 60.00008 * 3 2 1 6 6 C 3.47002 * 83.84600 * 38.77323 * 2 1 3 7 7 C 4.84760 * 79.74985 * 44.82108 * 2 1 3 8 8 N 1.46906 * 109.47150 * 7.13304 * 7 6 5 9 9 C 1.46849 * 110.99542 * 294.20994 * 8 7 6 10 10 C 1.53037 * 109.52210 * 174.16096 * 9 8 7 11 11 C 1.53119 * 109.27746 * 59.17809 * 10 9 8 12 12 C 1.53123 * 109.15900 * 302.34399 * 11 10 9 13 13 C 1.46843 * 110.99976 * 169.99962 * 8 7 6 14 14 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 15 15 C 1.42899 * 113.99963 * 299.99523 * 14 3 2 16 16 C 1.50703 * 109.46892 * 180.02562 * 15 14 3 17 17 H 1.07996 * 120.00377 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99585 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00393 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 59.99772 * 20 18 16 22 22 H 1.48492 * 109.47374 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47183 * 300.00322 * 20 18 16 24 24 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 27 27 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 28 28 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 4 3 2 31 31 H 1.09004 * 109.47261 * 300.00303 * 4 3 2 32 32 H 1.09000 * 109.47070 * 127.12764 * 7 6 5 33 33 H 1.08993 * 109.47684 * 247.13052 * 7 6 5 34 34 H 1.09004 * 109.45870 * 294.17183 * 9 8 7 35 35 H 1.08995 * 109.46720 * 54.14261 * 9 8 7 36 36 H 1.08995 * 109.50614 * 299.23910 * 10 9 8 37 37 H 1.09001 * 109.50135 * 179.11276 * 10 9 8 38 38 H 1.09003 * 109.52609 * 182.43807 * 11 10 9 39 39 H 1.08998 * 109.52751 * 62.24715 * 11 10 9 40 40 H 1.08999 * 109.50222 * 297.71002 * 12 11 10 41 41 H 1.09007 * 109.49880 * 177.59564 * 12 11 10 42 42 H 1.09000 * 109.45942 * 305.84846 * 13 8 7 43 43 H 1.08994 * 109.46399 * 65.81848 * 13 8 7 44 44 H 1.08995 * 109.47515 * 300.00287 * 15 14 3 45 45 H 1.09002 * 109.46998 * 60.00868 * 15 14 3 46 46 H 0.96993 * 120.00110 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 1.5493 2.1364 1.2019 6 6 1.1580 2.6897 2.1605 7 6 0.6674 3.3836 3.3625 8 7 1.5452 4.5225 3.6631 9 6 2.8888 4.0659 4.0407 10 6 3.8126 5.2750 4.2044 11 6 3.2460 6.2017 5.2836 12 6 1.8279 6.6240 4.8894 13 6 0.9616 5.3758 4.7060 14 8 1.5636 2.1162 -1.1667 15 6 1.9853 1.5199 -2.3950 16 6 1.4288 2.3079 -3.5529 17 1 0.8149 3.1772 -3.3691 18 6 1.7034 1.9188 -4.8468 19 7 2.4505 0.8598 -5.0706 20 14 1.0143 2.8958 -6.2821 21 1 1.5123 4.2932 -6.2142 22 1 1.4513 2.2755 -7.5585 23 1 -0.4692 2.8953 -6.2144 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9333 2.4702 0.0011 30 1 3.9336 0.9286 -0.8892 31 1 3.9330 0.9288 0.8909 32 1 -0.3465 3.7430 3.1862 33 1 0.6665 2.6931 4.2058 34 1 2.8353 3.5196 4.9825 35 1 3.2819 3.4112 3.2631 36 1 3.8774 5.8141 3.2593 37 1 4.8057 4.9367 4.5001 38 1 3.8776 7.0855 5.3732 39 1 3.2173 5.6752 6.2376 40 1 1.8616 7.1843 3.9551 41 1 1.4031 7.2496 5.6746 42 1 -0.0450 5.6725 4.4113 43 1 0.9172 4.8234 5.6445 44 1 3.0741 1.5215 -2.4448 45 1 1.6207 0.4939 -2.4447 46 1 2.6440 0.5864 -5.9809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002294462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:04 Heat of formation + Delta-G solvation = -13.401671 kcal Electronic energy + Delta-G solvation = -21910.371211 eV Core-core repulsion = 18800.693346 eV Total energy + Delta-G solvation = -3109.677866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.14865 -38.33768 -34.63907 -33.49674 -32.37144 -31.40307 -30.90012 -29.53261 -27.33879 -26.79407 -23.72409 -23.21382 -22.97417 -22.62760 -20.18994 -19.86651 -17.35252 -16.37577 -15.99063 -15.47964 -15.11460 -14.89281 -14.63525 -14.60140 -14.24825 -13.86889 -13.66272 -13.36664 -13.10779 -12.82501 -12.62283 -12.38175 -12.21451 -11.99723 -11.54963 -11.40280 -11.37873 -10.95414 -10.94761 -10.88213 -10.71958 -10.66810 -10.59568 -10.52895 -10.39485 -10.04873 -9.74834 -9.65626 -8.95941 -8.78063 -8.43940 -8.09746 -6.09388 -4.10263 2.85231 2.97109 3.34137 3.36559 3.41253 3.98842 4.30637 4.42372 4.61880 4.69823 4.74767 5.03535 5.13472 5.18522 5.27014 5.27837 5.31893 5.35677 5.40103 5.44385 5.53407 5.57883 5.67816 5.69405 5.74522 5.80298 5.88361 5.96104 6.00843 6.02931 6.04159 6.20367 6.27381 6.31125 6.39088 6.61826 6.68761 6.82886 6.91372 6.97948 7.16321 7.47034 7.81278 7.97780 8.17132 8.59239 9.02253 9.53933 11.01927 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.003459 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.559640 B = 8092.688483 C = 8618.941702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.224 3.776 4 C -0.170 4.170 5 C -0.117 4.117 6 C -0.195 4.195 7 C 0.179 3.821 8 N -0.535 5.535 9 C 0.056 3.944 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.056 3.944 14 O -0.375 6.375 15 C 0.192 3.808 16 C -0.514 4.514 17 H 0.065 0.935 18 C 0.058 3.942 19 N -0.899 5.899 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.052 0.948 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.011 0.989 45 H 0.012 0.988 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.220 4.643 20.978 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.184 3.816 4 C -0.227 4.227 5 C -0.118 4.118 6 C -0.196 4.196 7 C 0.053 3.947 8 N -0.260 5.260 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.159 4.159 12 C -0.155 4.155 13 C -0.071 4.071 14 O -0.295 6.295 15 C 0.118 3.882 16 C -0.552 4.552 17 H 0.083 0.917 18 C -0.143 4.143 19 N -0.538 5.538 20 Si 0.734 3.266 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.029 0.971 45 H 0.030 0.970 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.222 4.984 20.420 21.020 hybrid contribution -0.181 -0.332 -0.163 0.411 sum 0.041 4.653 20.257 20.784 Atomic orbital electron populations 1.21660 0.95156 1.00700 1.02681 1.22075 0.97439 0.95965 1.02477 1.17946 0.91952 0.89474 0.82251 1.22338 0.95029 1.02943 1.02394 1.21866 0.97432 0.98082 0.94446 1.21692 1.02061 0.99149 0.96679 1.18796 0.96034 0.89710 0.90142 1.61841 1.02540 1.19137 1.42509 1.22105 0.88997 0.96877 0.99198 1.21595 0.97820 0.96362 0.99814 1.21584 0.96531 0.99422 0.98333 1.21590 0.95074 0.96894 1.01960 1.22084 0.98470 0.94147 0.92432 1.88027 1.74354 1.53905 1.13260 1.20299 0.94801 0.93877 0.79229 1.21021 1.31894 1.12801 0.89521 0.91661 1.24915 0.95277 0.95374 0.98781 1.69942 1.37764 1.24852 1.21211 0.86414 0.79441 0.80053 0.80699 1.20006 1.21177 1.20029 0.91156 0.93409 0.93364 0.90083 0.92063 0.91772 0.90601 0.92505 0.88653 0.93060 0.95115 0.90321 0.90826 0.91601 0.91860 0.92469 0.90845 0.91592 0.90512 0.94964 0.97148 0.96987 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.51 37.16 0.35 -2.18 16 2 C -0.14 -2.54 4.59 -26.73 -0.12 -2.66 16 3 C 0.22 4.45 0.74 -93.40 -0.07 4.39 16 4 C -0.17 -3.04 8.21 37.16 0.30 -2.74 16 5 C -0.12 -2.18 10.88 -37.12 -0.40 -2.59 16 6 C -0.20 -3.22 12.34 -37.12 -0.46 -3.67 16 7 C 0.18 2.23 5.46 -6.61 -0.04 2.20 16 8 N -0.54 -6.50 4.63 -238.18 -1.10 -7.61 16 9 C 0.06 0.64 5.30 -3.83 -0.02 0.62 16 10 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 11 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 12 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 13 C 0.06 0.53 5.46 -3.84 -0.02 0.51 16 14 O -0.38 -9.31 9.25 -35.23 -0.33 -9.64 16 15 C 0.19 5.18 4.89 36.01 0.18 5.36 16 16 C -0.51 -15.18 9.43 -34.44 -0.32 -15.50 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 20 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.07 1.42 7.68 -51.93 -0.40 1.02 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.80 7.23 -51.93 -0.38 0.42 16 27 H 0.08 1.53 6.54 -51.93 -0.34 1.19 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.08 1.42 6.55 -51.93 -0.34 1.08 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.08 7.99 -51.93 -0.41 0.66 16 33 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 1.04 7.11 -51.93 -0.37 0.67 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.66 8.02 -51.93 -0.42 0.25 16 43 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.01 0.30 6.42 -51.93 -0.33 -0.04 16 45 H 0.01 0.34 6.42 -51.93 -0.33 0.01 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -31.33 364.38 -9.79 -41.12 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.36 Total: -2.05 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.20 Total: -18.37 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: -0.37 Total: -33.50 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.33 Total: -9.64 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.33 -9.79 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002294462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.719 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds