Wall clock time and date at job start Tue Mar 31 2020 01:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 C 1.47203 * 109.46868 * 60.00008 * 3 2 1 6 6 C 3.47002 * 83.84600 * 38.77323 * 2 1 3 7 7 C 4.84760 * 79.74985 * 44.82108 * 2 1 3 8 8 N 1.46906 * 109.47150 * 7.13304 * 7 6 5 9 9 C 1.46849 * 110.99542 * 294.20994 * 8 7 6 10 10 C 1.53037 * 109.52210 * 174.16096 * 9 8 7 11 11 C 1.53119 * 109.27746 * 59.17809 * 10 9 8 12 12 C 1.53123 * 109.15900 * 302.34399 * 11 10 9 13 13 C 1.46843 * 110.99976 * 169.99962 * 8 7 6 14 14 O 1.42895 * 109.47000 * 300.00395 * 3 2 1 15 15 C 1.42899 * 113.99963 * 299.99523 * 14 3 2 16 16 C 1.50703 * 109.46892 * 180.02562 * 15 14 3 17 17 H 1.07996 * 120.00377 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99585 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00393 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47219 * 59.99772 * 20 18 16 22 22 H 1.48492 * 109.47374 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47183 * 300.00322 * 20 18 16 24 24 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 27 27 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 28 28 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 4 3 2 31 31 H 1.09004 * 109.47261 * 300.00303 * 4 3 2 32 32 H 1.09000 * 109.47070 * 127.12764 * 7 6 5 33 33 H 1.08993 * 109.47684 * 247.13052 * 7 6 5 34 34 H 1.09004 * 109.45870 * 294.17183 * 9 8 7 35 35 H 1.08995 * 109.46720 * 54.14261 * 9 8 7 36 36 H 1.08995 * 109.50614 * 299.23910 * 10 9 8 37 37 H 1.09001 * 109.50135 * 179.11276 * 10 9 8 38 38 H 1.09003 * 109.52609 * 182.43807 * 11 10 9 39 39 H 1.08998 * 109.52751 * 62.24715 * 11 10 9 40 40 H 1.08999 * 109.50222 * 297.71002 * 12 11 10 41 41 H 1.09007 * 109.49880 * 177.59564 * 12 11 10 42 42 H 1.09000 * 109.45942 * 305.84846 * 13 8 7 43 43 H 1.08994 * 109.46399 * 65.81848 * 13 8 7 44 44 H 1.08995 * 109.47515 * 300.00287 * 15 14 3 45 45 H 1.09002 * 109.46998 * 60.00868 * 15 14 3 46 46 H 0.96993 * 120.00110 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 1.5493 2.1364 1.2019 6 6 1.1580 2.6897 2.1605 7 6 0.6674 3.3836 3.3625 8 7 1.5452 4.5225 3.6631 9 6 2.8888 4.0659 4.0407 10 6 3.8126 5.2750 4.2044 11 6 3.2460 6.2017 5.2836 12 6 1.8279 6.6240 4.8894 13 6 0.9616 5.3758 4.7060 14 8 1.5636 2.1162 -1.1667 15 6 1.9853 1.5199 -2.3950 16 6 1.4288 2.3079 -3.5529 17 1 0.8149 3.1772 -3.3691 18 6 1.7034 1.9188 -4.8468 19 7 2.4505 0.8598 -5.0706 20 14 1.0143 2.8958 -6.2821 21 1 1.5123 4.2932 -6.2142 22 1 1.4513 2.2755 -7.5585 23 1 -0.4692 2.8953 -6.2144 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.9333 2.4702 0.0011 30 1 3.9336 0.9286 -0.8892 31 1 3.9330 0.9288 0.8909 32 1 -0.3465 3.7430 3.1862 33 1 0.6665 2.6931 4.2058 34 1 2.8353 3.5196 4.9825 35 1 3.2819 3.4112 3.2631 36 1 3.8774 5.8141 3.2593 37 1 4.8057 4.9367 4.5001 38 1 3.8776 7.0855 5.3732 39 1 3.2173 5.6752 6.2376 40 1 1.8616 7.1843 3.9551 41 1 1.4031 7.2496 5.6746 42 1 -0.0450 5.6725 4.4113 43 1 0.9172 4.8234 5.6445 44 1 3.0741 1.5215 -2.4448 45 1 1.6207 0.4939 -2.4447 46 1 2.6440 0.5864 -5.9809 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002294462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:02 Heat of formation + Delta-G solvation = -31.569120 kcal Electronic energy + Delta-G solvation = -21911.159011 eV Core-core repulsion = 18800.693346 eV Total energy + Delta-G solvation = -3110.465665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.11678 -39.88765 -35.88019 -35.12469 -34.28162 -32.61706 -31.71094 -30.99150 -29.41513 -27.89185 -25.31207 -24.51583 -24.00577 -23.85400 -21.76535 -20.61297 -19.19401 -17.92969 -17.21727 -16.96865 -16.56684 -16.36839 -15.99856 -15.82591 -15.33495 -15.17798 -14.85241 -14.41941 -14.17347 -14.15447 -13.96566 -13.77166 -13.71402 -13.14205 -13.00324 -12.95580 -12.84606 -12.76559 -12.37674 -12.25664 -12.13471 -11.93611 -11.91617 -11.65077 -11.46295 -11.38933 -11.25436 -11.12624 -10.79547 -10.74040 -10.09076 -9.30079 -8.31050 -6.42278 1.38464 1.43272 1.49481 1.55694 1.61522 2.36227 2.95988 3.02354 3.12566 3.56847 3.79294 3.88616 3.94643 4.03595 4.08422 4.20370 4.30243 4.39322 4.40967 4.47621 4.50433 4.59401 4.61908 4.62499 4.68440 4.76357 4.84333 4.88850 4.93440 4.96061 4.99552 5.04037 5.07159 5.08934 5.23041 5.26659 5.30783 5.32888 5.37298 5.48367 5.55552 5.98739 6.03444 6.15926 6.54588 6.63532 6.83852 7.28562 8.80501 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.019874 B = 0.003459 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.559640 B = 8092.688483 C = 8618.941702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.213 3.787 4 C -0.163 4.163 5 C -0.172 4.172 6 C -0.162 4.162 7 C 0.175 3.825 8 N -0.557 5.557 9 C 0.056 3.944 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.117 4.117 13 C 0.055 3.945 14 O -0.399 6.399 15 C 0.212 3.788 16 C -0.552 4.552 17 H 0.054 0.946 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.978 3.022 21 H -0.268 1.268 22 H -0.272 1.272 23 H -0.267 1.267 24 H 0.033 0.967 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.048 0.952 44 H -0.006 1.006 45 H -0.001 1.001 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 5.277 22.843 23.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.176 4.176 3 C 0.174 3.826 4 C -0.220 4.220 5 C -0.174 4.174 6 C -0.163 4.163 7 C 0.049 3.951 8 N -0.283 5.283 9 C -0.072 4.072 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.155 4.155 13 C -0.071 4.071 14 O -0.320 6.320 15 C 0.138 3.862 16 C -0.590 4.590 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.192 1.192 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.017 0.983 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.450 5.618 22.309 23.010 hybrid contribution 0.037 -0.510 -0.610 0.796 sum -0.413 5.107 21.699 22.296 Atomic orbital electron populations 1.21594 0.94870 1.01850 1.01244 1.22050 0.97706 0.94792 1.03031 1.18214 0.92952 0.90487 0.80944 1.22268 0.94048 1.02496 1.03174 1.21757 0.99864 1.00418 0.95316 1.22615 0.99891 0.97226 0.96578 1.19078 0.96524 0.90355 0.89162 1.61808 1.02857 1.19270 1.44327 1.22086 0.88991 0.97184 0.98893 1.21593 0.98346 0.96090 0.99552 1.21573 0.96436 0.99450 0.98028 1.21610 0.95295 0.96699 1.01883 1.22178 0.98745 0.93983 0.92233 1.87951 1.74964 1.55006 1.14031 1.19853 0.93365 0.92898 0.80111 1.21359 1.32994 1.13324 0.91275 0.92733 1.25857 0.95132 0.96310 1.01453 1.70039 1.38169 1.25938 1.22319 0.85318 0.78959 0.78601 0.77058 1.19278 1.19692 1.19181 0.94779 0.90932 0.92468 0.91894 0.88872 0.92836 0.92128 0.89224 0.87131 0.90427 0.93655 0.92820 0.92961 0.90530 0.90974 0.91228 0.92542 0.89434 0.89830 0.93388 0.98811 0.98340 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.51 71.98 0.68 -4.18 16 2 C -0.14 -5.00 4.59 30.60 0.14 -4.86 16 3 C 0.21 8.73 0.74 -12.60 -0.01 8.72 16 4 C -0.16 -6.02 8.21 71.98 0.59 -5.43 16 5 C -0.17 -6.46 10.88 31.13 0.34 -6.12 16 6 C -0.16 -5.20 12.34 31.13 0.38 -4.82 16 7 C 0.17 3.95 5.46 84.50 0.46 4.41 16 8 N -0.56 -12.53 4.63 -907.47 -4.21 -16.74 16 9 C 0.06 1.20 5.30 86.33 0.46 1.66 16 10 C -0.12 -2.21 6.09 30.65 0.19 -2.02 16 11 C -0.12 -1.68 6.00 30.67 0.18 -1.49 16 12 C -0.12 -1.73 6.09 30.65 0.19 -1.54 16 13 C 0.06 0.89 5.46 86.33 0.47 1.36 16 14 O -0.40 -20.81 9.25 -148.98 -1.38 -22.19 16 15 C 0.21 12.07 4.89 71.24 0.35 12.42 16 16 C -0.55 -33.78 9.43 25.60 0.24 -33.54 16 17 H 0.05 3.36 7.81 -2.91 -0.02 3.33 16 18 C 0.01 0.67 5.46 84.66 0.46 1.13 16 19 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 20 Si 0.98 45.28 29.54 68.60 2.03 47.31 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H 0.03 1.42 7.68 -2.38 -0.02 1.40 16 25 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.06 1.87 7.23 -2.39 -0.02 1.85 16 27 H 0.06 2.47 6.54 -2.39 -0.02 2.46 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 2.39 6.55 -2.39 -0.02 2.37 16 31 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.11 2.20 7.99 -2.39 -0.02 2.18 16 33 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 34 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.05 1.40 7.11 -2.39 -0.02 1.38 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 1.22 8.02 -2.39 -0.02 1.20 16 43 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 44 H -0.01 -0.34 6.42 -2.39 -0.02 -0.36 16 45 H 0.00 -0.06 6.42 -2.39 -0.02 -0.08 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -69.56 364.38 2.78 -66.78 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.92 Total: 14.62 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 5.13 Total: -34.29 kcal Atomic # 7 Polarization: -68.30 SS G_CDS: -3.92 Total: -72.22 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.38 Total: -22.19 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.56 2.78 -66.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002294462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.208 kcal (2) G-P(sol) polarization free energy of solvation -69.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds