Wall clock time and date at job start Tue Mar 31 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47336 * 2 1 4 4 C 1.53003 * 109.47083 * 119.99746 * 2 1 3 5 5 C 1.52996 * 109.47067 * 175.00050 * 4 2 1 6 6 N 1.46504 * 109.46904 * 179.97438 * 5 4 2 7 7 C 1.46496 * 120.00094 * 266.12376 * 6 5 4 8 8 C 1.50701 * 109.47080 * 269.99654 * 7 6 5 9 9 H 1.07995 * 120.00122 * 0.02562 * 8 7 6 10 10 C 1.37885 * 119.99696 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00090 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99630 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47533 * 90.00030 * 12 10 8 14 14 H 1.48503 * 109.47245 * 210.00052 * 12 10 8 15 15 H 1.48503 * 109.47435 * 329.99956 * 12 10 8 16 16 C 1.34773 * 119.99754 * 86.12417 * 6 5 4 17 17 O 1.21280 * 120.00283 * 185.06727 * 16 6 5 18 18 C 1.50704 * 120.00205 * 5.06711 * 16 6 5 19 19 H 1.08998 * 109.63976 * 329.18398 * 18 16 6 20 20 C 1.53029 * 109.81609 * 89.71514 * 18 16 6 21 21 C 1.50062 * 110.20170 * 169.03829 * 20 18 16 22 22 C 1.29444 * 124.07440 * 343.31263 * 21 20 18 23 23 C 1.50066 * 124.07831 * 359.96070 * 22 21 20 24 24 C 1.53032 * 110.14427 * 343.12409 * 23 22 21 25 25 H 1.08996 * 109.47569 * 300.00485 * 1 2 3 26 26 H 1.09007 * 109.46759 * 60.00090 * 1 2 3 27 27 H 1.08996 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47569 * 239.99515 * 2 1 3 29 29 H 1.09001 * 109.46741 * 299.99839 * 3 2 1 30 30 H 1.08996 * 109.47188 * 59.99281 * 3 2 1 31 31 H 1.08997 * 109.47070 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47264 * 54.99752 * 4 2 1 33 33 H 1.08999 * 109.46859 * 294.99853 * 4 2 1 34 34 H 1.09003 * 109.47162 * 60.00223 * 5 4 2 35 35 H 1.08999 * 109.47120 * 299.99643 * 5 4 2 36 36 H 1.08997 * 109.47374 * 30.00017 * 7 6 5 37 37 H 1.09000 * 109.47000 * 150.00227 * 7 6 5 38 38 H 0.96998 * 119.99986 * 179.97438 * 11 10 8 39 39 H 1.09007 * 109.35459 * 289.43069 * 20 18 16 40 40 H 1.08995 * 109.36082 * 49.14896 * 20 18 16 41 41 H 1.07996 * 117.96345 * 163.08501 * 21 20 18 42 42 H 1.07999 * 117.96357 * 180.23752 * 22 21 20 43 43 H 1.08994 * 109.36241 * 103.33045 * 23 22 21 44 44 H 1.09004 * 109.35964 * 222.92007 * 23 22 21 45 45 H 1.09000 * 109.64047 * 169.12071 * 24 23 22 46 46 H 1.08995 * 109.63943 * 289.75151 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 7 4.0531 -1.5210 2.3846 7 6 4.4818 -0.7476 3.5525 8 6 5.9524 -0.4386 3.4382 9 1 6.5116 -0.7834 2.5810 10 6 6.5836 0.2854 4.4274 11 7 5.9025 0.7057 5.4709 12 14 8.4062 0.6690 4.2853 13 1 8.5865 1.9586 3.5715 14 1 8.9986 0.7680 5.6434 15 1 9.0827 -0.4147 3.5280 16 6 4.1079 -2.8674 2.4108 17 8 4.4243 -3.4417 3.4310 18 6 3.7761 -3.6593 1.1723 19 1 3.0372 -3.1201 0.5796 20 6 5.0424 -3.8774 0.3412 21 6 4.7833 -4.8802 -0.7447 22 6 3.7725 -5.6886 -0.7592 23 6 2.7188 -5.7366 0.3083 24 6 3.2159 -5.0303 1.5716 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1370 34 1 3.9994 0.1676 1.1421 35 1 3.8531 -1.3940 0.3004 36 1 3.9174 0.1837 3.5988 37 1 4.3017 -1.3270 4.4580 38 1 6.3467 1.2147 6.1670 39 1 5.3500 -2.9310 -0.1037 40 1 5.8385 -4.2488 0.9864 41 1 5.4817 -4.9279 -1.5671 42 1 3.6841 -6.3741 -1.5890 43 1 1.8171 -5.2413 -0.0514 44 1 2.4887 -6.7761 0.5424 45 1 2.3877 -4.8990 2.2679 46 1 4.0008 -5.6249 2.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069812407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:39 Heat of formation + Delta-G solvation = -72.478311 kcal Electronic energy + Delta-G solvation = -22978.619823 eV Core-core repulsion = 19866.380202 eV Total energy + Delta-G solvation = -3112.239621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29302 -38.67258 -37.94111 -36.08888 -34.69043 -32.31444 -31.70206 -30.49450 -28.81609 -27.94147 -25.67645 -24.71194 -24.09560 -23.09292 -20.82905 -19.89617 -18.90194 -18.61955 -17.88236 -17.34783 -16.68987 -16.24857 -15.95073 -15.72054 -15.13717 -14.80758 -14.64967 -14.45606 -14.33540 -14.05529 -13.79554 -13.66179 -13.45847 -13.19321 -13.14564 -13.05650 -12.91471 -12.68213 -12.60454 -12.29177 -12.15210 -11.97085 -11.79623 -11.68075 -11.56074 -11.47950 -11.40165 -11.29191 -10.65684 -10.41801 -9.84185 -9.41242 -8.23721 -6.39033 1.34314 1.37518 1.45199 1.47779 1.80154 2.28666 2.43473 3.05384 3.54686 3.78806 3.84101 3.91972 3.99883 4.11464 4.22616 4.31009 4.34226 4.42182 4.46258 4.52658 4.64860 4.69317 4.74039 4.83306 4.85773 4.93696 4.96995 4.97305 5.05800 5.07562 5.10336 5.16336 5.20110 5.23634 5.26213 5.35979 5.38378 5.51618 5.56159 5.58959 5.80692 5.85684 6.05156 6.09197 6.68613 6.79774 7.26677 7.48090 8.83421 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.006338 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.560231 B = 4416.915482 C = 5958.647553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.152 4.152 4 C -0.126 4.126 5 C 0.107 3.893 6 N -0.601 5.601 7 C 0.262 3.738 8 C -0.542 4.542 9 H 0.054 0.946 10 C 0.008 3.992 11 N -0.929 5.929 12 Si 0.967 3.033 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.272 1.272 16 C 0.502 3.498 17 O -0.601 6.601 18 C -0.096 4.096 19 H 0.114 0.886 20 C -0.078 4.078 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.085 4.085 24 C -0.101 4.101 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.019 0.981 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 -6.180 -18.309 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.164 4.164 5 C -0.015 4.015 6 N -0.330 5.330 7 C 0.141 3.859 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.191 4.191 11 N -0.568 5.568 12 Si 0.792 3.208 13 H -0.187 1.187 14 H -0.206 1.206 15 H -0.197 1.197 16 C 0.291 3.709 17 O -0.483 6.483 18 C -0.117 4.117 19 H 0.132 0.868 20 C -0.116 4.116 21 C -0.178 4.178 22 C -0.168 4.168 23 C -0.122 4.122 24 C -0.139 4.139 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.037 0.963 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.427 -6.341 -17.614 20.960 hybrid contribution 1.150 0.565 1.037 1.648 sum -8.277 -5.776 -16.577 19.408 Atomic orbital electron populations 1.21810 0.94238 1.02120 1.01920 1.21036 0.96415 0.95986 0.97065 1.21924 1.01037 0.96186 1.01802 1.22065 0.94482 1.00980 0.98921 1.21822 0.94633 0.98257 0.86786 1.48253 1.62178 1.05772 1.16817 1.18687 0.94063 0.89513 0.83657 1.21697 0.95386 1.34328 1.06669 0.92802 1.25874 1.03388 0.95389 0.94488 1.70059 1.38344 1.37926 1.10492 0.85419 0.78852 0.78926 0.77653 1.18654 1.20623 1.19701 1.21367 0.76563 0.82558 0.90385 1.90606 1.50794 1.70754 1.36112 1.21424 1.00218 0.96838 0.93220 0.86760 1.20306 0.95492 0.99839 0.95924 1.21990 0.99728 0.97412 0.98656 1.22285 0.95865 0.98933 0.99677 1.20507 0.97996 1.01547 0.92162 1.21434 1.00136 0.93919 0.98431 0.93675 0.91273 0.92137 0.89336 0.91121 0.93906 0.93063 0.91504 0.93771 0.90797 0.88811 0.96341 0.98788 0.92410 0.90191 0.93056 0.85853 0.85246 0.88974 0.89255 0.92342 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.09 -1.72 2.92 -10.79 -0.03 -1.75 16 3 C -0.15 -3.24 8.95 71.98 0.64 -2.59 16 4 C -0.13 -3.41 4.80 30.59 0.15 -3.26 16 5 C 0.11 3.48 4.77 86.38 0.41 3.90 16 6 N -0.60 -26.58 2.46 -826.16 -2.03 -28.62 16 7 C 0.26 14.71 5.18 85.63 0.44 15.15 16 8 C -0.54 -32.03 9.39 25.60 0.24 -31.79 16 9 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 10 C 0.01 0.44 5.46 84.66 0.46 0.91 16 11 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 12 Si 0.97 45.64 29.54 68.60 2.03 47.67 16 13 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 C 0.50 22.04 6.71 87.66 0.59 22.63 16 17 O -0.60 -32.88 15.87 -3.03 -0.05 -32.93 16 18 C -0.10 -2.94 1.73 -11.40 -0.02 -2.96 16 19 H 0.11 2.88 5.57 -2.39 -0.01 2.87 16 20 C -0.08 -2.20 5.36 29.66 0.16 -2.05 16 21 C -0.16 -3.34 9.80 27.04 0.27 -3.07 16 22 C -0.15 -2.68 9.80 27.04 0.27 -2.42 16 23 C -0.09 -1.60 6.12 29.66 0.18 -1.41 16 24 C -0.10 -2.85 4.77 30.74 0.15 -2.70 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.07 0.97 8.14 -2.38 -0.02 0.96 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.19 6.57 -2.39 -0.02 1.17 16 32 H 0.07 1.71 7.34 -2.39 -0.02 1.69 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 2.56 6.47 -2.39 -0.02 2.55 16 35 H 0.09 2.49 5.81 -2.39 -0.01 2.48 16 36 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 37 H -0.01 -0.39 7.36 -2.39 -0.02 -0.41 16 38 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.08 2.14 7.45 -2.38 -0.02 2.13 16 40 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.12 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 45 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.05 1.62 8.09 -2.39 -0.02 1.60 16 Total: -1.00 -74.42 361.91 5.71 -68.71 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.92 Total: 15.49 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 4.57 Total: -13.23 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.75 Total: -85.71 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.05 Total: -32.93 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.42 5.71 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069812407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.771 kcal (2) G-P(sol) polarization free energy of solvation -74.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds