Wall clock time and date at job start Tue Mar 31 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47247 * 2 1 4 4 C 1.53002 * 109.46955 * 119.99635 * 2 1 3 5 5 C 1.53007 * 109.47009 * 65.00617 * 4 2 1 6 6 N 1.46491 * 109.47028 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00451 * 90.17650 * 6 5 4 8 8 C 1.50703 * 109.47171 * 96.06079 * 7 6 5 9 9 H 1.08004 * 120.00127 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00230 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99979 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00098 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47538 * 270.00537 * 12 10 8 14 14 H 1.48498 * 109.47300 * 150.00280 * 12 10 8 15 15 H 1.48505 * 109.46778 * 30.00685 * 12 10 8 16 16 C 1.34782 * 119.99943 * 270.17432 * 6 5 4 17 17 O 1.21280 * 119.99896 * 5.51305 * 16 6 5 18 18 C 1.50704 * 119.99962 * 185.51203 * 16 6 5 19 19 H 1.08998 * 109.63819 * 41.23393 * 18 16 6 20 20 C 1.53024 * 109.64013 * 280.59277 * 18 16 6 21 21 C 1.50071 * 110.14322 * 190.88253 * 20 18 16 22 22 C 1.29439 * 124.07675 * 17.12708 * 21 20 18 23 23 C 1.50063 * 124.07615 * 359.53982 * 22 21 20 24 24 C 1.53021 * 110.15084 * 17.12653 * 23 22 21 25 25 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47011 * 300.00029 * 1 2 3 27 27 H 1.08998 * 109.46622 * 59.99971 * 1 2 3 28 28 H 1.08997 * 109.47393 * 239.99593 * 2 1 3 29 29 H 1.08998 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46740 * 300.00002 * 3 2 1 31 31 H 1.09006 * 109.46846 * 59.99928 * 3 2 1 32 32 H 1.08994 * 109.47441 * 305.00437 * 4 2 1 33 33 H 1.09004 * 109.47422 * 185.00036 * 4 2 1 34 34 H 1.08994 * 109.47166 * 59.99651 * 5 4 2 35 35 H 1.09004 * 109.46554 * 299.99950 * 5 4 2 36 36 H 1.08998 * 109.47157 * 336.06102 * 7 6 5 37 37 H 1.09001 * 109.47801 * 216.05638 * 7 6 5 38 38 H 0.97006 * 119.99729 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.36203 * 311.09141 * 20 18 16 40 40 H 1.08999 * 109.35559 * 70.67482 * 20 18 16 41 41 H 1.08002 * 117.95927 * 197.11207 * 21 20 18 42 42 H 1.07999 * 117.96229 * 179.54933 * 22 21 20 43 43 H 1.08996 * 109.35826 * 256.91708 * 23 22 21 44 44 H 1.09010 * 109.24768 * 137.26092 * 23 22 21 45 45 H 1.08999 * 109.64658 * 190.88486 * 24 23 22 46 46 H 1.08994 * 109.64723 * 70.24486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 7 2.1230 -2.8859 2.3845 7 6 1.2810 -2.9617 3.5809 8 6 0.5408 -4.2744 3.5918 9 1 0.6837 -4.9817 2.7882 10 6 -0.3187 -4.5726 4.6278 11 7 -0.9643 -5.7183 4.6376 12 14 -0.5653 -3.3498 6.0182 13 1 0.4248 -3.6154 7.0926 14 1 -1.9388 -3.4919 6.5647 15 1 -0.3781 -1.9697 5.5027 16 6 3.3465 -3.4513 2.3845 17 8 4.0828 -3.3037 1.4322 18 6 3.7995 -4.2671 3.5680 19 1 2.9770 -4.8895 3.9203 20 6 4.2613 -3.3339 4.6894 21 6 4.9571 -4.1197 5.7620 22 6 5.4139 -5.3200 5.6010 23 6 5.3028 -6.0974 4.3222 24 6 4.9808 -5.1563 3.1594 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5489 -2.2724 1.1420 36 1 0.5643 -2.1406 3.5735 37 1 1.9065 -2.8900 4.4707 38 1 -1.5688 -5.9282 5.3667 39 1 4.9478 -2.5917 4.2822 40 1 3.3961 -2.8267 5.1166 41 1 5.0848 -3.6546 6.7283 42 1 5.9055 -5.7915 6.4391 43 1 4.5093 -6.8384 4.4176 44 1 6.2482 -6.6036 4.1261 45 1 4.7126 -5.7400 2.2789 46 1 5.8487 -4.5344 2.9401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069812413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:43 Heat of formation + Delta-G solvation = -52.332286 kcal Electronic energy + Delta-G solvation = -23077.154431 eV Core-core repulsion = 19965.788407 eV Total energy + Delta-G solvation = -3111.366024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75117 -37.48890 -36.38222 -34.81584 -32.52066 -31.09130 -30.47464 -29.15277 -27.44425 -27.01821 -24.05096 -23.11578 -22.51816 -21.53658 -19.78001 -18.31206 -17.59090 -16.90708 -16.37963 -15.86707 -15.18809 -15.04097 -14.43818 -14.18153 -13.74970 -13.61429 -13.29100 -13.20859 -12.84200 -12.68530 -12.45357 -12.35669 -12.12446 -12.01091 -11.90546 -11.66366 -11.57210 -11.20294 -10.88553 -10.82351 -10.62799 -10.49247 -10.47452 -10.34207 -10.19530 -10.14348 -9.97094 -9.59559 -8.88752 -8.75772 -8.63819 -7.69650 -6.22363 -4.23210 2.57917 3.16545 3.24057 3.25848 3.39018 3.87479 4.25822 4.96704 5.02087 5.04837 5.09463 5.10705 5.12451 5.31571 5.50204 5.61279 5.62903 5.68548 5.69936 5.80272 5.85858 5.89604 5.92402 5.94902 5.97131 6.06141 6.10762 6.17289 6.19485 6.22874 6.34728 6.36738 6.37357 6.51121 6.55879 6.59924 6.62854 6.77171 6.84983 6.94647 7.22967 7.40937 7.44702 8.16945 8.41721 8.82622 8.99831 9.37469 10.90177 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011304 B = 0.007241 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.444203 B = 3865.917521 C = 5504.189099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.144 4.144 4 C -0.128 4.128 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.204 3.796 8 C -0.539 4.539 9 H 0.078 0.922 10 C 0.078 3.922 11 N -0.890 5.890 12 Si 0.867 3.133 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.264 1.264 16 C 0.526 3.474 17 O -0.571 6.571 18 C -0.110 4.110 19 H 0.121 0.879 20 C -0.081 4.081 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.091 4.091 24 C -0.095 4.095 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.433 7.699 -1.671 10.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.166 4.166 5 C -0.004 4.004 6 N -0.321 5.321 7 C 0.083 3.917 8 C -0.578 4.578 9 H 0.096 0.904 10 C -0.126 4.126 11 N -0.527 5.527 12 Si 0.693 3.307 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.189 1.189 16 C 0.315 3.685 17 O -0.452 6.452 18 C -0.131 4.131 19 H 0.139 0.861 20 C -0.118 4.118 21 C -0.166 4.166 22 C -0.175 4.175 23 C -0.128 4.128 24 C -0.133 4.133 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.645 7.666 -2.043 11.018 hybrid contribution -0.472 0.502 1.045 1.252 sum 7.173 8.168 -0.998 10.916 Atomic orbital electron populations 1.21909 0.95274 1.02257 1.01286 1.21051 0.95839 0.95858 0.98551 1.21821 1.00822 0.96227 1.01305 1.22005 1.01222 0.95949 0.97469 1.21384 0.99542 0.91027 0.88459 1.47933 1.15926 1.53192 1.15025 1.19936 0.90438 0.98310 0.83052 1.21379 1.25184 1.01693 1.09507 0.90374 1.24857 0.95021 0.95021 0.97671 1.69891 1.27965 1.22263 1.32604 0.86984 0.78210 0.82333 0.83133 1.19716 1.20902 1.18866 1.20476 0.81088 0.78757 0.88225 1.90574 1.54369 1.62704 1.37572 1.21432 1.00198 0.97601 0.93898 0.86141 1.20446 0.99894 0.97394 0.94097 1.21966 0.99392 0.96455 0.98821 1.22012 1.00959 0.96161 0.98361 1.20478 1.01540 0.97979 0.92808 1.21366 0.97444 0.97191 0.97267 0.92025 0.92740 0.93172 0.91243 0.92894 0.93033 0.92892 0.92084 0.91851 0.91098 0.90357 0.94879 0.94863 0.92389 0.91160 0.90082 0.88122 0.88328 0.90524 0.91373 0.91509 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 2 C -0.09 -1.20 2.92 -90.62 -0.26 -1.47 16 3 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 4 C -0.13 -1.97 5.01 -26.73 -0.13 -2.10 16 5 C 0.12 2.16 5.09 -4.04 -0.02 2.14 16 6 N -0.59 -12.13 2.47 -175.06 -0.43 -12.56 16 7 C 0.20 4.46 3.93 -5.19 -0.02 4.44 16 8 C -0.54 -13.99 8.64 -34.44 -0.30 -14.29 16 9 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 10 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 12 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 16 C 0.53 10.92 6.78 -10.98 -0.07 10.85 16 17 O -0.57 -12.79 15.81 5.56 0.09 -12.70 16 18 C -0.11 -2.08 1.76 -91.55 -0.16 -2.24 16 19 H 0.12 2.57 6.50 -51.93 -0.34 2.24 16 20 C -0.08 -1.35 5.21 -28.17 -0.15 -1.50 16 21 C -0.15 -2.22 9.80 -35.90 -0.35 -2.57 16 22 C -0.16 -2.24 9.80 -35.90 -0.35 -2.59 16 23 C -0.09 -1.32 6.12 -28.18 -0.17 -1.49 16 24 C -0.09 -1.59 4.64 -26.51 -0.12 -1.72 16 25 H 0.06 0.79 6.57 -51.93 -0.34 0.45 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.32 7.51 -51.93 -0.39 0.93 16 35 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16 36 H 0.03 0.72 7.08 -51.93 -0.37 0.35 16 37 H 0.03 0.71 4.20 -51.93 -0.22 0.49 16 38 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 40 H 0.08 1.38 5.71 -51.93 -0.30 1.09 16 41 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.10 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -28.80 356.09 -8.63 -37.43 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.22 Total: 5.58 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.54 Total: -13.31 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.34 Total: -37.36 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.80 -8.63 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069812413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.898 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds