Wall clock time and date at job start Tue Mar 31 2020 01:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47247 * 2 1 4 4 C 1.53002 * 109.46955 * 119.99635 * 2 1 3 5 5 C 1.53007 * 109.47009 * 65.00617 * 4 2 1 6 6 N 1.46491 * 109.47028 * 180.02562 * 5 4 2 7 7 C 1.46497 * 120.00451 * 90.17650 * 6 5 4 8 8 C 1.50703 * 109.47171 * 96.06079 * 7 6 5 9 9 H 1.08004 * 120.00127 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00230 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99979 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00098 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47538 * 270.00537 * 12 10 8 14 14 H 1.48498 * 109.47300 * 150.00280 * 12 10 8 15 15 H 1.48505 * 109.46778 * 30.00685 * 12 10 8 16 16 C 1.34782 * 119.99943 * 270.17432 * 6 5 4 17 17 O 1.21280 * 119.99896 * 5.51305 * 16 6 5 18 18 C 1.50704 * 119.99962 * 185.51203 * 16 6 5 19 19 H 1.08998 * 109.63819 * 41.23393 * 18 16 6 20 20 C 1.53024 * 109.64013 * 280.59277 * 18 16 6 21 21 C 1.50071 * 110.14322 * 190.88253 * 20 18 16 22 22 C 1.29439 * 124.07675 * 17.12708 * 21 20 18 23 23 C 1.50063 * 124.07615 * 359.53982 * 22 21 20 24 24 C 1.53021 * 110.15084 * 17.12653 * 23 22 21 25 25 H 1.09001 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47011 * 300.00029 * 1 2 3 27 27 H 1.08998 * 109.46622 * 59.99971 * 1 2 3 28 28 H 1.08997 * 109.47393 * 239.99593 * 2 1 3 29 29 H 1.08998 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46740 * 300.00002 * 3 2 1 31 31 H 1.09006 * 109.46846 * 59.99928 * 3 2 1 32 32 H 1.08994 * 109.47441 * 305.00437 * 4 2 1 33 33 H 1.09004 * 109.47422 * 185.00036 * 4 2 1 34 34 H 1.08994 * 109.47166 * 59.99651 * 5 4 2 35 35 H 1.09004 * 109.46554 * 299.99950 * 5 4 2 36 36 H 1.08998 * 109.47157 * 336.06102 * 7 6 5 37 37 H 1.09001 * 109.47801 * 216.05638 * 7 6 5 38 38 H 0.97006 * 119.99729 * 179.97438 * 11 10 8 39 39 H 1.08997 * 109.36203 * 311.09141 * 20 18 16 40 40 H 1.08999 * 109.35559 * 70.67482 * 20 18 16 41 41 H 1.08002 * 117.95927 * 197.11207 * 21 20 18 42 42 H 1.07999 * 117.96229 * 179.54933 * 22 21 20 43 43 H 1.08996 * 109.35826 * 256.91708 * 23 22 21 44 44 H 1.09010 * 109.24768 * 137.26092 * 23 22 21 45 45 H 1.08999 * 109.64658 * 190.88486 * 24 23 22 46 46 H 1.08994 * 109.64723 * 70.24486 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 7 2.1230 -2.8859 2.3845 7 6 1.2810 -2.9617 3.5809 8 6 0.5408 -4.2744 3.5918 9 1 0.6837 -4.9817 2.7882 10 6 -0.3187 -4.5726 4.6278 11 7 -0.9643 -5.7183 4.6376 12 14 -0.5653 -3.3498 6.0182 13 1 0.4248 -3.6154 7.0926 14 1 -1.9388 -3.4919 6.5647 15 1 -0.3781 -1.9697 5.5027 16 6 3.3465 -3.4513 2.3845 17 8 4.0828 -3.3037 1.4322 18 6 3.7995 -4.2671 3.5680 19 1 2.9770 -4.8895 3.9203 20 6 4.2613 -3.3339 4.6894 21 6 4.9571 -4.1197 5.7620 22 6 5.4139 -5.3200 5.6010 23 6 5.3028 -6.0974 4.3222 24 6 4.9808 -5.1563 3.1594 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6053 -0.2617 2.1370 33 1 3.1263 -0.6443 1.2953 34 1 2.0699 -2.6550 0.3004 35 1 0.5489 -2.2724 1.1420 36 1 0.5643 -2.1406 3.5735 37 1 1.9065 -2.8900 4.4707 38 1 -1.5688 -5.9282 5.3667 39 1 4.9478 -2.5917 4.2822 40 1 3.3961 -2.8267 5.1166 41 1 5.0848 -3.6546 6.7283 42 1 5.9055 -5.7915 6.4391 43 1 4.5093 -6.8384 4.4176 44 1 6.2482 -6.6036 4.1261 45 1 4.7126 -5.7400 2.2789 46 1 5.8487 -4.5344 2.9401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069812413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:43 Heat of formation + Delta-G solvation = -66.463258 kcal Electronic energy + Delta-G solvation = -23077.767196 eV Core-core repulsion = 19965.788407 eV Total energy + Delta-G solvation = -3111.978789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33483 -38.80012 -37.70003 -36.43641 -34.49361 -32.44605 -31.73224 -30.68432 -29.11979 -27.99228 -25.44685 -24.67173 -24.09236 -22.94216 -20.88794 -19.91925 -19.20368 -18.63462 -17.94778 -17.37974 -16.57212 -16.38845 -16.04642 -15.67646 -15.11760 -14.80187 -14.70515 -14.57104 -14.44338 -14.09506 -13.98887 -13.64637 -13.49811 -13.27771 -13.10818 -13.08200 -12.93923 -12.70444 -12.47045 -12.16954 -12.10774 -11.87061 -11.77704 -11.68333 -11.60146 -11.55779 -11.41088 -11.28434 -10.78365 -10.48960 -9.83555 -9.40604 -8.29587 -6.36041 1.39188 1.40149 1.44500 1.49306 1.72505 2.28625 2.34097 3.04090 3.58282 3.79906 3.87399 3.91479 3.99402 4.07318 4.19530 4.33555 4.37258 4.42071 4.55379 4.56079 4.60487 4.64999 4.68101 4.72188 4.81246 4.82675 4.86913 4.93135 4.99361 5.01623 5.03990 5.09172 5.14227 5.17406 5.25038 5.31884 5.39788 5.45846 5.47719 5.50715 5.74009 5.80020 6.08531 6.19303 6.59813 6.69786 7.24468 7.35465 8.86605 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.011304 B = 0.007241 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.444203 B = 3865.917521 C = 5504.189099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.140 4.140 4 C -0.115 4.115 5 C 0.115 3.885 6 N -0.596 5.596 7 C 0.214 3.786 8 C -0.537 4.537 9 H 0.028 0.972 10 C 0.023 3.977 11 N -0.940 5.940 12 Si 0.933 3.067 13 H -0.259 1.259 14 H -0.285 1.285 15 H -0.239 1.239 16 C 0.519 3.481 17 O -0.591 6.591 18 C -0.109 4.109 19 H 0.091 0.909 20 C -0.078 4.078 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.090 4.090 24 C -0.092 4.092 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.268 0.732 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.050 0.950 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.321 9.843 -0.201 12.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.197 4.197 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.325 5.325 7 C 0.092 3.908 8 C -0.576 4.576 9 H 0.047 0.953 10 C -0.176 4.176 11 N -0.580 5.580 12 Si 0.755 3.245 13 H -0.184 1.184 14 H -0.211 1.211 15 H -0.162 1.162 16 C 0.309 3.691 17 O -0.474 6.474 18 C -0.130 4.130 19 H 0.109 0.891 20 C -0.115 4.115 21 C -0.180 4.180 22 C -0.174 4.174 23 C -0.127 4.127 24 C -0.130 4.130 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.069 0.931 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.543 9.828 -0.593 13.036 hybrid contribution -0.751 -0.272 0.450 0.917 sum 7.793 9.556 -0.143 12.331 Atomic orbital electron populations 1.21891 0.94603 1.01686 1.02359 1.21046 0.96370 0.96785 0.96892 1.21781 1.00745 0.94826 1.02393 1.21887 1.00409 0.93960 0.99120 1.21527 0.99331 0.92724 0.87158 1.48027 1.15735 1.53410 1.15363 1.19773 0.90584 0.96181 0.84229 1.21463 1.25588 1.02480 1.08021 0.95335 1.25727 0.94496 0.96891 1.00507 1.70051 1.29243 1.24755 1.33919 0.85925 0.78143 0.80765 0.79628 1.18379 1.21103 1.16192 1.20901 0.81009 0.78610 0.88601 1.90550 1.54910 1.63531 1.38383 1.21405 0.99932 0.97707 0.93994 0.89133 1.20417 1.00065 0.97227 0.93775 1.22096 0.99739 0.96894 0.99235 1.22255 1.00482 0.95966 0.98721 1.20501 1.02567 0.97411 0.92228 1.21348 0.96584 0.97220 0.97856 0.93411 0.92476 0.91310 0.91554 0.93031 0.91348 0.92416 0.91733 0.93074 0.92342 0.90478 0.93755 0.93292 0.92304 0.90571 0.90488 0.85653 0.85511 0.91429 0.88669 0.93103 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.95 71.98 0.64 -2.72 16 2 C -0.09 -2.23 2.92 -10.79 -0.03 -2.26 16 3 C -0.14 -2.80 9.19 71.98 0.66 -2.14 16 4 C -0.12 -3.47 5.01 30.60 0.15 -3.32 16 5 C 0.12 4.24 5.09 86.38 0.44 4.68 16 6 N -0.60 -24.86 2.47 -826.16 -2.04 -26.91 16 7 C 0.21 9.31 3.93 85.63 0.34 9.65 16 8 C -0.54 -28.67 8.64 25.60 0.22 -28.44 16 9 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 10 C 0.02 1.24 5.47 84.65 0.46 1.70 16 11 N -0.94 -55.61 13.96 21.45 0.30 -55.31 16 12 Si 0.93 39.67 27.47 68.60 1.88 41.56 16 13 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 14 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.24 -9.12 6.54 99.48 0.65 -8.47 16 16 C 0.52 22.05 6.78 87.66 0.59 22.64 16 17 O -0.59 -27.07 15.81 -3.03 -0.05 -27.12 16 18 C -0.11 -4.17 1.76 -11.40 -0.02 -4.19 16 19 H 0.09 4.02 6.50 -2.39 -0.02 4.00 16 20 C -0.08 -2.49 5.21 29.66 0.15 -2.34 16 21 C -0.16 -4.44 9.80 27.04 0.27 -4.17 16 22 C -0.16 -4.07 9.80 27.04 0.27 -3.81 16 23 C -0.09 -2.51 6.12 29.66 0.18 -2.33 16 24 C -0.09 -3.11 4.64 30.74 0.14 -2.97 16 25 H 0.05 1.20 6.57 -2.39 -0.02 1.19 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.06 2.27 7.51 -2.39 -0.02 2.25 16 35 H 0.08 2.82 6.49 -2.38 -0.02 2.81 16 36 H 0.04 1.85 7.08 -2.39 -0.02 1.83 16 37 H 0.05 2.02 4.20 -2.39 -0.01 2.01 16 38 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 39 H 0.08 2.33 8.10 -2.39 -0.02 2.32 16 40 H 0.08 2.50 5.71 -2.39 -0.01 2.49 16 41 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 Total: -1.00 -63.85 356.09 5.43 -58.42 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.87 Total: 29.38 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.47 Total: -20.02 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.74 Total: -82.21 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.88 Total: 41.56 kcal Total: -63.85 5.43 -58.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069812413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.048 kcal (2) G-P(sol) polarization free energy of solvation -63.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds