Wall clock time and date at job start Tue Mar 31 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33130 * 119.99880 * 2 1 4 4 C 1.46951 * 119.99674 * 352.42892 * 3 2 1 5 5 O 1.21657 * 120.00412 * 353.57985 * 4 3 2 6 6 N 1.34777 * 119.99696 * 173.57916 * 4 3 2 7 7 C 1.36826 * 120.00131 * 186.02103 * 6 4 3 8 8 H 1.07998 * 120.00105 * 223.00189 * 7 6 4 9 9 C 1.39079 * 119.99593 * 43.00064 * 7 6 4 10 10 N 1.31347 * 119.99938 * 8.66697 * 9 7 6 11 11 Si 1.86800 * 119.99788 * 188.66614 * 9 7 6 12 12 H 1.48501 * 109.47226 * 59.99916 * 11 9 7 13 13 H 1.48491 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.46886 * 300.00045 * 11 9 7 15 15 C 1.46499 * 120.00368 * 6.02785 * 6 4 3 16 16 C 1.55238 * 110.46927 * 229.49616 * 15 6 4 17 17 C 1.54894 * 102.58850 * 203.38989 * 16 15 6 18 18 C 1.54271 * 104.31040 * 37.92868 * 17 16 15 19 19 C 1.53877 * 106.60068 * 336.32448 * 18 17 16 20 20 C 1.50694 * 120.00276 * 180.02562 * 2 1 3 21 21 C 1.52999 * 109.47273 * 180.02562 * 20 2 1 22 22 C 1.53000 * 109.47273 * 300.00083 * 20 2 1 23 23 C 1.52998 * 109.47252 * 59.99866 * 20 2 1 24 24 H 1.09006 * 109.47552 * 83.78079 * 1 2 3 25 25 H 1.08995 * 109.47118 * 203.78113 * 1 2 3 26 26 H 1.09001 * 109.47634 * 323.78085 * 1 2 3 27 27 H 1.08000 * 119.99919 * 172.42619 * 3 2 1 28 28 H 0.97001 * 120.00178 * 180.02562 * 10 9 7 29 29 H 1.09002 * 110.43267 * 352.14060 * 15 6 4 30 30 H 1.08996 * 110.89898 * 85.09607 * 16 15 6 31 31 H 1.08999 * 110.76224 * 321.61656 * 16 15 6 32 32 H 1.08996 * 110.48277 * 279.18839 * 17 16 15 33 33 H 1.08998 * 110.48721 * 156.67249 * 17 16 15 34 34 H 1.08993 * 110.03114 * 95.61171 * 18 17 16 35 35 H 1.09001 * 110.02861 * 216.99326 * 18 17 16 36 36 H 1.08991 * 110.03048 * 119.28514 * 19 18 17 37 37 H 1.08996 * 110.03192 * 240.67025 * 19 18 17 38 38 H 1.09002 * 109.47335 * 59.99822 * 21 20 2 39 39 H 1.09000 * 109.47269 * 179.97438 * 21 20 2 40 40 H 1.09004 * 109.47028 * 300.00023 * 21 20 2 41 41 H 1.09001 * 109.46824 * 59.99548 * 22 20 2 42 42 H 1.09000 * 109.47325 * 180.02562 * 22 20 2 43 43 H 1.09002 * 109.46782 * 299.99839 * 22 20 2 44 44 H 1.09004 * 109.46920 * 60.00055 * 23 20 2 45 45 H 1.08998 * 109.47722 * 180.02562 * 23 20 2 46 46 H 1.09001 * 109.47014 * 300.00555 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1726 1.1530 0.0000 4 6 1.4473 2.4200 -0.1677 5 8 0.2579 2.4109 -0.4228 6 7 2.1000 3.5921 -0.0388 7 6 1.4043 4.7698 -0.0721 8 1 1.7892 5.6087 -0.6329 9 6 0.2013 4.8865 0.6160 10 7 -0.1833 3.9324 1.4328 11 14 -0.8674 6.4001 0.3788 12 1 -1.2589 6.5108 -1.0494 13 1 -2.0867 6.2816 1.2180 14 1 -0.1063 7.6110 0.7786 15 6 3.5543 3.6054 0.1369 16 6 3.9479 4.5069 1.3379 17 6 5.4125 4.8880 1.0082 18 6 5.4202 5.0845 -0.5220 19 6 4.2388 4.2690 -1.0759 20 6 2.2605 -1.3050 -0.0006 21 6 3.7647 -1.0254 0.0002 22 6 1.8909 -2.1079 1.2483 23 6 1.8909 -2.1068 -1.2501 24 1 -0.3634 0.1113 -1.0216 25 1 -0.3633 -0.9404 0.4144 26 1 -0.3634 0.8291 0.6072 27 1 3.2455 1.1570 0.1233 28 1 -1.0224 4.0136 1.9125 29 1 3.9296 2.5920 0.2794 30 1 3.8946 3.9520 2.2745 31 1 3.3172 5.3950 1.3773 32 1 6.0895 4.0826 1.2927 33 1 5.6888 5.8137 1.5131 34 1 5.2915 6.1395 -0.7635 35 1 6.3572 4.7175 -0.9408 36 1 3.5367 4.9282 -1.5862 37 1 4.6020 3.5059 -1.7642 38 1 4.0277 -0.4544 0.8906 39 1 4.3098 -1.9693 0.0002 40 1 4.0284 -0.4532 -0.8893 41 1 0.8193 -2.3071 1.2482 42 1 2.4363 -3.0517 1.2481 43 1 2.1543 -1.5367 2.1385 44 1 2.1542 -1.5348 -2.1399 45 1 2.4356 -3.0509 -1.2504 46 1 0.8192 -2.3059 -1.2502 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080395080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:38:30 Heat of formation + Delta-G solvation = -25.204586 kcal Electronic energy + Delta-G solvation = -23555.531539 eV Core-core repulsion = 20445.341861 eV Total energy + Delta-G solvation = -3110.189678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 279.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.99298 -37.79113 -36.41287 -33.39624 -31.65076 -31.03860 -28.34267 -28.03933 -27.04828 -26.73299 -26.06352 -24.35097 -21.88709 -19.94261 -19.79645 -19.22208 -16.91073 -16.17152 -15.95769 -15.16670 -14.82754 -14.33782 -14.05118 -13.84082 -13.74760 -13.27972 -13.14196 -12.71142 -12.58329 -12.30989 -11.93482 -11.78018 -11.70070 -11.47928 -11.40497 -11.18487 -10.90744 -10.82388 -10.73867 -10.72025 -10.62996 -10.48972 -10.43451 -10.33369 -10.19443 -10.13510 -9.93941 -9.55759 -8.68990 -8.10801 -7.62748 -6.89809 -5.97443 -3.73713 2.50758 3.34907 3.40157 3.42263 4.35745 4.87744 4.95182 5.04299 5.13668 5.22112 5.27174 5.27320 5.51038 5.56077 5.66824 5.73488 5.76616 5.78372 5.95124 6.00037 6.03302 6.05892 6.10899 6.14563 6.17105 6.21167 6.23921 6.29504 6.37553 6.42649 6.46159 6.49337 6.52916 6.58561 6.63493 6.71061 6.87378 6.98907 7.05739 7.20068 7.43348 7.56197 7.70874 8.40492 9.21688 9.37738 9.82656 10.54091 11.09188 Molecular weight = 279.19amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.007191 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.640922 B = 3892.760447 C = 5366.407861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.073 4.073 3 C -0.199 4.199 4 C 0.503 3.497 5 O -0.526 6.526 6 N -0.448 5.448 7 C -0.327 4.327 8 H 0.074 0.926 9 C 0.060 3.940 10 N -0.828 5.828 11 Si 0.909 3.091 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.279 1.279 15 C 0.130 3.870 16 C -0.121 4.121 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.135 4.135 20 C -0.034 4.034 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.134 4.134 24 H 0.061 0.939 25 H 0.033 0.967 26 H 0.098 0.902 27 H 0.112 0.888 28 H 0.261 0.739 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.052 0.948 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 -7.181 -1.041 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.076 4.076 3 C -0.220 4.220 4 C 0.293 3.707 5 O -0.406 6.406 6 N -0.169 5.169 7 C -0.454 4.454 8 H 0.092 0.908 9 C -0.149 4.149 10 N -0.463 5.463 11 Si 0.737 3.263 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.205 1.205 15 C 0.024 3.976 16 C -0.159 4.159 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.173 4.173 20 C -0.034 4.034 21 C -0.199 4.199 22 C -0.194 4.194 23 C -0.191 4.191 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.116 0.884 27 H 0.130 0.870 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.455 -7.230 -1.047 11.174 hybrid contribution -0.362 0.784 0.022 0.864 sum 8.094 -6.446 -1.025 10.397 Atomic orbital electron populations 1.20931 0.91355 1.01147 1.02733 1.22058 0.96202 0.92599 0.96719 1.23046 0.99532 0.94194 1.05183 1.17953 0.87313 0.83070 0.82331 1.90557 1.15073 1.86270 1.48672 1.43156 1.03182 1.05377 1.65199 1.18773 1.05036 0.91034 1.30597 0.90849 1.25244 0.98494 0.96799 0.94391 1.69836 1.21113 1.31868 1.23457 0.86320 0.79696 0.81995 0.78272 1.20249 1.21316 1.20459 1.21999 0.84512 0.97635 0.93442 1.22759 0.94348 1.01290 0.97551 1.22323 0.97834 1.00353 0.95765 1.22043 0.97788 0.99958 0.95796 1.22495 0.96978 0.99308 0.98567 1.19576 0.94626 0.93507 0.95715 1.21950 0.94772 1.01069 1.02156 1.21846 1.01503 0.98938 0.97120 1.21791 1.01485 0.98859 0.96970 0.91991 0.94772 0.88382 0.87022 0.92871 0.91004 0.92590 0.89537 0.92529 0.92436 0.92365 0.92874 0.90794 0.92989 0.92337 0.92977 0.92323 0.92375 0.92999 0.92551 0.92618 0.92931 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 7.78 36.00 0.28 -1.85 16 2 C -0.07 -1.38 4.91 -101.13 -0.50 -1.87 16 3 C -0.20 -4.16 8.27 -37.83 -0.31 -4.47 16 4 C 0.50 12.98 6.54 -12.73 -0.08 12.90 16 5 O -0.53 -15.33 10.93 5.23 0.06 -15.27 16 6 N -0.45 -11.19 2.56 -107.15 -0.27 -11.47 16 7 C -0.33 -8.84 7.33 -15.01 -0.11 -8.95 16 8 H 0.07 1.94 7.06 -52.49 -0.37 1.57 16 9 C 0.06 1.69 4.69 -17.45 -0.08 1.60 16 10 N -0.83 -24.33 11.11 55.50 0.62 -23.71 16 11 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.13 2.60 3.16 -66.08 -0.21 2.39 16 16 C -0.12 -2.28 6.39 -24.55 -0.16 -2.44 16 17 C -0.12 -1.85 6.82 -25.07 -0.17 -2.02 16 18 C -0.12 -1.73 6.80 -25.61 -0.17 -1.91 16 19 C -0.13 -2.38 6.44 -25.61 -0.16 -2.54 16 20 C -0.03 -0.49 0.87 -155.66 -0.14 -0.63 16 21 C -0.14 -1.85 7.14 37.16 0.27 -1.58 16 22 C -0.14 -1.79 8.30 37.16 0.31 -1.48 16 23 C -0.13 -1.72 8.32 37.16 0.31 -1.41 16 24 H 0.06 1.29 8.00 -51.93 -0.42 0.87 16 25 H 0.03 0.58 6.65 -51.93 -0.35 0.23 16 26 H 0.10 2.41 6.23 -51.93 -0.32 2.09 16 27 H 0.11 2.07 3.58 -52.49 -0.19 1.88 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.07 1.35 5.30 -51.93 -0.28 1.07 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.85 6.99 -51.93 -0.36 1.49 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.46 6.84 -51.93 -0.36 1.11 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.78 7.38 -51.93 -0.38 0.39 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.77 7.62 -51.93 -0.40 0.38 16 41 H 0.06 0.76 6.80 -51.93 -0.35 0.41 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.74 7.76 -51.93 -0.40 0.33 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -30.81 347.31 -8.28 -39.09 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.96 Total: 3.53 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -0.93 Total: -14.27 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.34 Total: -35.18 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.06 Total: -15.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.81 -8.28 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080395080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.889 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds